no kidding! What's firing the loadLigands() function? A button? A callback
(that could be the problem -- not good to run jmolScript from a callback on
some platforms, I think).
Try using
setTimeout("loadLigands('....')",100)
in whatever call is doing that. I know the quotes are pain there. You might
implement it this way:
function loadLigands(structure, trigger) {
if (!trigger) {
setTimeout("loadLigands('"+structure+"',1)",100)
return
}
var load_script = "load " + structure + ";select all; spacefill 20%;
wireframe 0.35;";
jmolScript(load_script);
}
This starts a new thread so that the thread involved in the user clicking
can complete, and the load can go by a different thread.
But really, that's very odd.
Bob
On Thu, Sep 25, 2008 at 10:32 AM, rob yang <[EMAIL PROTECTED]> wrote:
> Hi all,
> So here's something new that's confusing me. I am loading a multi-structure
> mol2 file. That's as simple as it gets, right? That's what I thought too
> till safari spoke. In Firefox3, the molecule loads no problem. In safari, it
> doesn't.. *unless* I put in an alert message right before the load command.
> Below is the barebone of my code. It seems like something is out of sync in
> safari that I need to slow it down (alert message) for the script to catch
> up. Help. Thanks.
>
> -Rob
>
> ----
> <html>
> <head>
> <script src="/submit/jmol-11.6.RC15/Jmol.js"></script>
> <script type="text/javascript">
> function loadLigands(structure) {
> var load_script = "load " + structure + ";select all; spacefill
> 20%; wireframe 0.35;";
>
> //alert(load_script); // ------UNCOMMENT THIS ALERT MESSAGE TO GET
> IT TO WORK IN SAFARI-----
>
> jmolScript(load_script);
> }
> function messageCallback(app, msg) {
> msg = "" + msg+""; /* convert callback message into string
> (recommended by other Jmol users) */
> if (msg.match(/ScriptException/)) {alert("=== Jmol SCRIPT ERROR
> ===\n" + msg);}
> else if (msg.match(/java\.security\.AccessControlException/))
> {alert("=== Java Error ===\nA Java error prevented loading of the
> structure");}
> else if (msg.indexOf("ERROR")>=0 && msg.indexOf("load >>") >= 0)
> {alert(msg);}
> }
> </script>
>
> </head>
> <bod>
> <body
> onload="loadLigands('file:///Library/WebServer/Documents/toy/vs_analysis/result0.mol2');">
>
>
> <script type="text/javascript">
> jmolInitialize("/submit/jmol-11.6.RC15/",
> "JmolAppletSigned.jar");
> jmolSetCallback("messageCallback","messageCallback");
> jmolApplet([600, 450]);
> </script>
> <!-- end jmol -->
>
> </body></html>
>
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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