Thanks Paul!
Thanks Bob!
You guys are awesome.
The Jmol.script() worked right away when invoked from inside the same page
as the one that has jmolApplet0 specified. But, I still have one silly
problem. I would like to call this script from another frame. In other
words, my jmolApplet0 is loaded in one frame but I would like to call the
javascript (see below) placed in another frame:
<script type="text/javascript">
function pdb() {
Jmol.script(jmolApplet0, "load=1SHC")
}
</script>
<button onClick="pdb();">Load PDB</button>
What am I missing here? I am not able to load the PDB file in jmolApplet0
from another frame. Note that the page/frame from which "Load PDB" is
invoked contains the JSmol.min.js script in the header section:
<Head>
<script type="text/javascript" src="JSmol.min.js"></script>
</Head>
Thanks for any advice that you may have.
Amjad
On Tue, Sep 10, 2013 at 7:37 PM, Robert Hanson <[email protected]> wrote:
> The distribution includes a file
>
> jmol2.js
>
> which allows the older jsmol.js syntax such as
>
> jmolButton()
>
> jmolScript()
>
> etc.
>
> to be used without change. I think they are all implemented.
>
> But the new way is recommended:
>
> Jmol.jmolButton(appletID, "script", "label")
>
>
> see
> http://wiki.jmol.org/index.php/Jmol_JavaScript_Object#Conversion_using_the_Jmol2.js_.27adapter.27_library
>
>
> On Tue, Sep 10, 2013 at 7:26 PM, Paul Pillot <
> [email protected]> wrote:
>
>> Try:
>>
>> Jmol.script(jmolAppletObjectNameComesHere,"load =PDBID")
>>
>> where jmolAppletObjectNameComesHere is the name you gave to your jmol
>> object instance at creation
>>
>> Paul
>>
>> Le 10 sept. 2013 à 18:01, Amjad Farooq a écrit :
>>
>> Bob,
>>
>> I checked out your new JSmol page with the protein loaded in at:
>> http://chemapps.stolaf.edu/jmol/jsmol/simple.htm
>>
>> The response time for this JSmol page is very fast and on par with Jmol.
>> I see no differences between the two with this new JSmol javascript that
>> you are using. So, kudos to you! And this is really cool development. Heck
>> with this Java nonsense. I am gonna switch to JSmol and use it exclusively
>> from now on. It is much easier and more widely acceptable as many of my
>> collaborators do not have Java installed on their machines. Thank you!
>>
>> One quick question:
>> I notice that you also incorporated JmolButton, JmolCheckbox and JmolMenu
>> into JSmol. But, how do I use JmolScript feature of Jmol in JSmol?! For
>> example, I use the following javascript a lot in my Jmol:
>>
>> <script type="text/javascript">
>> function pdb() {
>> jmolScript("load =PDBID")
>> </script>
>> <button onClick="pdb();">Load PDB</button>
>>
>> How do I use the JmolScript syntax in JSmol?
>>
>> Thanks,
>> Amjad
>>
>>
>>
>>
>>
>>
>>
>>
>> On Tue, Sep 10, 2013 at 3:18 PM, Robert Hanson <[email protected]>wrote:
>>
>>> Angel, I'd appreciate your assessment of
>>>
>>> set platformSpeed
>>>
>>> Are there settings that you prefer for specific types of compounds? What
>>> would you recommend for proteins in general?
>>>
>>> Bob
>>>
>>>
>>>
>>> On Mon, Sep 9, 2013 at 12:51 PM, Angel Herráez <[email protected]>wrote:
>>>
>>>> > Something odd there. That's not been our experience.
>>>>
>>>> Well, my experience is that Java Jmol is faster than JSmol. Of course
>>>> this has improved a lot in the las few months and now it's rather
>>>> tolerable, and all depends on the size of the molecule loaded and
>>>> even personal perception, but for me yes, Java is still more agile in
>>>> both loading and responsiveness of the model.
>>>>
>>>> I am not denying the need to move forward into non-Java systems and
>>>> the excellent achievement in JSmol and prospects for the future.
>>>>
>>>>
>>>>
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>>>>
>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>>
>>> ------------------------------------------------------------------------------
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>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
> ------------------------------------------------------------------------------
> How ServiceNow helps IT people transform IT departments:
> 1. Consolidate legacy IT systems to a single system of record for IT
> 2. Standardize and globalize service processes across IT
> 3. Implement zero-touch automation to replace manual, redundant tasks
> http://pubads.g.doubleclick.net/gampad/clk?id=51271111&iu=/4140/ostg.clktrk
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
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