I am having trouble getting Jsmol to load gzipped files as well. Can someone
point me to the exact place to enter my server address in Jmol2.js? I’ve done
this for the two places where a search for “php” turned up.
Unzipped files are loading fine.
Thanks,
David
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David J. Marcey
Fletcher Jones Professor of Developmental Biology
CLU, 60 West Olsen Road., MC#3700
Thousand Oaks, CA 91360
[email protected]
ph: 805-493-3263
fax: 805-493-3392
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From: Christopher Masi <[email protected]<mailto:[email protected]>>
Reply-To:
"[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Date: Friday, January 10, 2014 at 10:21 AM
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: Re: [Jmol-users] Problem with JSmol 14.0.4 and gzipped files
Angel,
Thanks.
On Jan 10, 2014, at 10:28 AM, Angel Herráez
<[email protected]<mailto:[email protected]>> wrote:
Hello, Chris
A few things to check:
1- Have you pointed to the jmol.php file in your own server?
No, I hadn’t.
Now my header looks like this
<script type="text/javascript" src="../../reuse/JSmol.min.js"></script>
<script type="text/javascript" src="../../reuse/Jmol.js"></script> <!--location
of renamed Jmol2.js library-->
<script type="text/javascript">
var Info = {
j2sPath: "../../reuse/j2s”, //location of j2s directory on my server
use: "HTML5",
serverURL: "../../reuse/php/jsmol.php” //location of jsmol.php on my server
};
</script>
That is
specified in definition of the "Info" variable of J(S)mol, either in
your own page or in the Jmol2.js file. As far as I know, loading of
binary files relies of that php file and it must be in the same
server for full operation. The default Info points to StOlaf server,
so you need to set it properly.
It took me a little while to find how to set that setting in the “Info”
variable, but eventually I found it in one of the sample files and on the JSmol
wiki here
http://wiki.jmol.org/index.php/Jmol_JavaScript_Object#JSmol
2- I have also used Apache for running a local webserver, but I think
it may not include PHP. The other I have tested is EasyPHP which
indeed includes a PHP processor in addition to the web server.
In any case, in the end it will be the real online web server which
will have to provide PHP support.
I bought the “Server” app from the Apple app store (I think it was $20), and
there’s a checkbox that says “Enable PHP web applications”. I don’t know if the
server app is just a UI for configuring all the stuff that’s installed with
Mavericks, or if you get more server software when you buy the server app (I
suspect it’s the former). Downloading gzipped files works now, but the first
time a page loads a gzipped file I get the following error message,
"JmolCore.js: synchronous binary file transfer is requested but not available”
but everything loads just fine after that error message is dismissed.
I just tested it on the campus server, and I get the same error the first time
a gzipped file is requested, but the file loads once the dialogue box is
dismissed.
Thanks for the help!
Chris
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