I had similar problems (I reported them some time ago).  They were 
limited to one Windows machine (Win 7, Firefox, Chrome, IE) of 3 tried 
(Win 7 and Win 8).

My problem was with the update procedure.  It was insufficient to 
uninstall the old version, I had to delete (after uninstalling) all Java 
directories (hiding under Oracle and even Sun Systems names in Users 
directories).

After clean up, it works fine.

One curiosity: I have tested multiple Java applets (not just Jmol) and 
only Jmol did not work for me (it never fully loaded to get to the 
permission window, no error messages).

Please report back if it work for you too.

PM




On 7/25/2014 7:26 PM, Eric Martz wrote:
> In Windows 7, my tests indicate that Java 7 update 65 does not work
> with the current Jmol_S, or recent 14.0.17 Jmol_S. However, update 60
> does work.
>
> Do others confirm this?
>
> Previous emails indicate that Java 7 update 65 runs Jmol applet in
> Windows 8 (Angel H), and that Java 8 runs Jmol applet (Henry R, OS
> not specified?).
>
> However, on Windows 7, when I upgraded Java 7 from 60 to 65 today, I
> could not get the current Jmol_S applet to work in IE 11, Firefox 31,
> or Chrome (current).
>
> I tested Jmol 14.2.3
> http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED
> and Jmol_S 14.0.17
> http://bioinformatics.org/firstglance/fgij/fg.htm?mol=1d66&JAVA
>
> Curiously, a very old old unsigned applet (11.4.RC3) worked in
> Firefox and Chrome (but not in IE).
> http://www.umass.edu/molvis/tutorials/dna/dnapairs.htm
>
> All the above test sites work fine with Java 7 update 65 on OS X
> (Mavericks) with Safari or Firefox.
>
> All the above test sites work fine with Java 7 update 65 on Windows
> XP in Firefox 31 or Internet Explorer 8.
>
> I then uninstalled Java from my Windows 7, downloaded and installed
> Java 7 update 60
> (x86 version).
> http://www.oracle.com/technetwork/java/javase/downloads/java-archive-downloads-javase7-521261.html
> Everything worked again.
>
> Eric
>
>
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