Angel: you could simply put a link in the Jmol wiki to
http://proteopedia.org/w/Installing_and_enabling_Java#Windows
where solutions to the Java update 65 problem are given. Once the bug in
the Java installer is fixed in a new update, I will remove that yellow
block.
Reminder to everyone: the procedure successfully used by Albert Pratt
(presumably for unsigned Jmol applets) is documented here:
http://proteopedia.org/w/Installing_and_enabling_Java
Eric
On 7/29/14 4:14 PM, Albert Pratt wrote:
Recently I needed to install Java 7, version 65 (with Windows 7, Home
Premium) and took the opportunity to do a complete uninstall of
earlier Java versions (e-mails below) using Fix 1
<http://proteopedia.org/wiki/index.php/Installing_and_enabling_Java#Windows>in
Protopedia
<http://proteopedia.org/wiki/index.php/Installing_and_enabling_Java#Windows>,
deleting /all/ Oracle and Sun sub-directories in:
C:\Users\/your-name/\AppData\Roaming\
C:\Users\/your-name/\AppData\LocalLow\
C:\ProgramData\ .
Java 7, version 60, had previously worked with the caffeine Jmol model
in test page 2 <http://chemapps.stolaf.edu/jmol/jsmol/test2.htm>,
among others sites.
When version 65 was downloaded and installed it didn't work with Jmol.
However, following advice, I configured Java (Start>Java>Configure
Java>Security>Edit Site List) by including the URLs of relevant Jmol
sites (the http:// prefix appears to be essential). I also checked
<https://java.com/en/download/help/enable_browser.xml> that Java was
enabled in Chrome36, Firefox31 and IE11.
All three browsers now operate with test page 2 using Java 7, version 65.
On 29 July 2014 10:45, Robert Hanson <hans...@stolaf.edu
<mailto:hans...@stolaf.edu>> wrote:
I've done that now -- it is on the "Installing Jmol" template.
On Mon, Jul 28, 2014 at 10:52 AM, Robert Hanson
<hans...@stolaf.edu <mailto:hans...@stolaf.edu>> wrote:
It would be good if someone would get this into the Jmol wiki.
On Sat, Jul 26, 2014 at 6:55 PM, Eric Martz
<ema...@microbio.umass.edu <mailto:ema...@microbio.umass.edu>>
wrote:
Dear Pshemak,
Thanks so much -- your suggestion enabled Java 7 update 65
to work
with Jmol on my Windows 7 system.
1. I used Control Panel, Programs, Uninstall to uninstall the
non-working Java 7 update 65.
2. Using the free Windows search program Agent Ransack (truly
excellent, blows away Windows Explorer for finding system
files), I
located these:
C:\Users\Eric Martz\AppData\Roaming\Oracle
C:\ProgramData\Oracle
C:\Users\Eric Martz\AppData\LocalLow\Sun
C:\ProgramData\Sun
I deleted all 4 of those directories and all their contents.
3. I went to java.com <http://java.com> and downloaded the
installer for Java 7 update
65, and installed it. Now Jmol_S works again.
OTHER OBSERVATIONS
After uninstalling Java 7 update 65, and installing Java
7, update
60, Jmol_S worked. I wondered if then upgrading to 65
would run
Jmol_S. It did NOT.
I have explained two ways to get Jmol to work again here:
http://proteopedia.org/wiki/index.php/Installing_and_enabling_Java#Windows
-Eric
At 7/25/14, you wrote:
>I had similar problems (I reported them some time ago).
They were
>limited to one Windows machine (Win 7, Firefox, Chrome,
IE) of 3 tried
>(Win 7 and Win 8).
>
>My problem was with the update procedure. It was
insufficient to
>uninstall the old version, I had to delete (after
uninstalling) all Java
>directories (hiding under Oracle and even Sun Systems
names in Users
>directories).
>
>After clean up, it works fine.
>
>One curiosity: I have tested multiple Java applets (not
just Jmol) and
>only Jmol did not work for me (it never fully loaded to
get to the
>permission window, no error messages).
>
>Please report back if it work for you too.
>
>PM
>
>
>
>
>On 7/25/2014 7:26 PM, Eric Martz wrote:
> > In Windows 7, my tests indicate that Java 7 update 65
does not work
> > with the current Jmol_S, or recent 14.0.17 Jmol_S.
However, update 60
> > does work.
> >
> > Do others confirm this?
> >
> > Previous emails indicate that Java 7 update 65 runs
Jmol applet in
> > Windows 8 (Angel H), and that Java 8 runs Jmol applet
(Henry R, OS
> > not specified?).
> >
> > However, on Windows 7, when I upgraded Java 7 from 60
to 65 today, I
> > could not get the current Jmol_S applet to work in IE
11, Firefox 31,
> > or Chrome (current).
> >
> > I tested Jmol 14.2.3
> >
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm?_USE=SIGNED
> > and Jmol_S 14.0.17
> >
http://bioinformatics.org/firstglance/fgij/fg.htm?mol=1d66&JAVA
> >
> > Curiously, a very old old unsigned applet (11.4.RC3)
worked in
> > Firefox and Chrome (but not in IE).
> > http://www.umass.edu/molvis/tutorials/dna/dnapairs.htm
> >
> > All the above test sites work fine with Java 7 update
65 on OS X
> > (Mavericks) with Safari or Firefox.
> >
> > All the above test sites work fine with Java 7 update
65 on Windows
> > XP in Firefox 31 or Internet Explorer 8.
> >
> > I then uninstalled Java from my Windows 7, downloaded
and installed
> > Java 7 update 60
> > (x86 version).
> >
>
http://www.oracle.com/technetwork/java/javase/downloads/java-archive-downloads-javase7-521261.html
> > Everything worked again.
> >
> > Eric
> >
> >
> >
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--
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St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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