Hi Bob,
Thanks for fixing the byte reading issue - I think that problem overshadowed
the final question in my original email!
- does the server-side processing of the map file load all the data
into the jsmol object - i.e. can you change cutoff without having to make
another server request?
In essence, is it possible (even with some work on my part!) to have a slidebar
that changes the contour level, much like you can do with most desktop
molecular graphics packages? (and I've seen implementations of Jmol that enable
dynamic contour line setting, e.g.
http://ribfind.ismb.lon.ac.uk/cgi-bin/view_result.py?jobdir=jobs/example/rfind_2012_04_16_191809/&condist=6.500000&mapflag=1&pdbname=model.pdb&dsspname=sse.dssp&mapname=map.mrc)
Cheers,
Chris
From: chris.w...@stfc.ac.uk [mailto:chris.w...@stfc.ac.uk]
Sent: 04 September 2014 19:29
To: jmol-users@lists.sourceforge.net
Subject: [Jmol-users] Setting cutoff with some maps causes map to fail to load
Following the examples on the jsmol.htm page, I tried to change the cutoff off
some maps I had; results at
www.ccpem.ac.uk/jsmol_test/cutofftest.htm<http://www.ccpem.ac.uk/jsmol_test/cutofftest.htm>
- The left hand object is the example, which works as expected
- The middle object has a direct replacement of the pdb and map files
from the example - note that the map file does not load (or, perhaps more
accurately, doesn't display!)
- In the right hand object, I've removed 'cutoff 0.5 boundbox' and
'isosurface display within 2.0 {*};', and the map does load / display
Is this a bug, or is there something I've missed in the docs somewhere?
On a similar note, does the server-side processing of the map file load all the
data into the jsmol object - i.e. can you change cutoff without having to make
another server request?
Cheers,
Chris
-------------------
Dr Chris Wood
STFC Rutherford Appleton Laboratory
Didcot
OX11 0QX
chris.w...@stfc.ac.uk<mailto:chris.w...@stfc.ac.uk>
www.ccpem.ac.uk<http://www.ccpem.ac.uk>
Tel: +44(0)1235 567864
Tel: +44(0)7909 586624
Fax: +44(0)1235 567801
Skype: chris_c_wood<callto://chris_c_wood/>
--
Scanned by iCritical.
--
Scanned by iCritical.
------------------------------------------------------------------------------
Want excitement?
Manually upgrade your production database.
When you want reliability, choose Perforce
Perforce version control. Predictably reliable.
http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
