All the results are generated and the files (if any) are written. Here is
the java thread dump of the hanging process text file attached). It looks
similar for all the models I've tried. Clearly java is waiting for
something to clean up and close. I will try Jeremy's suggestion.
Is it possible that it is trying to read/write to a directory to which I
don't have access?
Charles
On Wednesday, March 17, 2021 at 4:50:16 PM UTC-4 se...@tisue.net wrote:
> Does it generate results and then hang, or does it hang before any runs
> even occur...?
>
> Seth
>
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2021-03-18 09:13:54
Full thread dump OpenJDK 64-Bit Server VM (11.0.2+9 mixed mode):
Threads class SMR info:
_java_thread_list=0x00001555000026e0, length=11, elements={
0x000015554c4a8800, 0x000015554c4b7000, 0x000015554c4cd800, 0x000015554c4cf800,
0x000015554c4d2000, 0x000015554c4d4000, 0x000015554c562800, 0x000015554c574000,
0x000015554c010000, 0x000015554eecd800, 0x0000155500001800
}
"Reference Handler" #2 daemon prio=10 os_prio=0 cpu=3.15ms elapsed=230.95s
tid=0x000015554c4a8800 nid=0x8cfc waiting on condition [0x00001555241e5000]
java.lang.Thread.State: RUNNABLE
at
java.lang.ref.Reference.waitForReferencePendingList(java.base@11.0.2/Native
Method)
at
java.lang.ref.Reference.processPendingReferences(java.base@11.0.2/Reference.java:241)
at
java.lang.ref.Reference$ReferenceHandler.run(java.base@11.0.2/Reference.java:213)
Locked ownable synchronizers:
- None
"Finalizer" #3 daemon prio=8 os_prio=0 cpu=2.60ms elapsed=230.95s
tid=0x000015554c4b7000 nid=0x8cfd in Object.wait() [0x0000155513ffe000]
java.lang.Thread.State: WAITING (on object monitor)
at java.lang.Object.wait(java.base@11.0.2/Native Method)
- waiting on <0x00000000c00024b0> (a java.lang.ref.ReferenceQueue$Lock)
at
java.lang.ref.ReferenceQueue.remove(java.base@11.0.2/ReferenceQueue.java:155)
- waiting to re-lock in wait() <0x00000000c00024b0> (a
java.lang.ref.ReferenceQueue$Lock)
at
java.lang.ref.ReferenceQueue.remove(java.base@11.0.2/ReferenceQueue.java:176)
at
java.lang.ref.Finalizer$FinalizerThread.run(java.base@11.0.2/Finalizer.java:170)
Locked ownable synchronizers:
- None
"Signal Dispatcher" #4 daemon prio=9 os_prio=0 cpu=0.47ms elapsed=230.94s
tid=0x000015554c4cd800 nid=0x8cfe runnable [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
Locked ownable synchronizers:
- None
"C2 CompilerThread0" #5 daemon prio=9 os_prio=0 cpu=2362.63ms elapsed=230.94s
tid=0x000015554c4cf800 nid=0x8cff waiting on condition [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
No compile task
Locked ownable synchronizers:
- None
"C1 CompilerThread0" #17 daemon prio=9 os_prio=0 cpu=835.88ms elapsed=230.94s
tid=0x000015554c4d2000 nid=0x8d00 waiting on condition [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
No compile task
Locked ownable synchronizers:
- None
"Sweeper thread" #23 daemon prio=9 os_prio=0 cpu=141.36ms elapsed=230.94s
tid=0x000015554c4d4000 nid=0x8d01 runnable [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
Locked ownable synchronizers:
- None
"Service Thread" #24 daemon prio=9 os_prio=0 cpu=0.11ms elapsed=230.92s
tid=0x000015554c562800 nid=0x8d04 runnable [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
Locked ownable synchronizers:
- None
"Common-Cleaner" #25 daemon prio=8 os_prio=0 cpu=3.74ms elapsed=230.92s
tid=0x000015554c574000 nid=0x8d06 in Object.wait() [0x0000155513559000]
java.lang.Thread.State: TIMED_WAITING (on object monitor)
at java.lang.Object.wait(java.base@11.0.2/Native Method)
- waiting on <no object reference available>
at
java.lang.ref.ReferenceQueue.remove(java.base@11.0.2/ReferenceQueue.java:155)
- waiting to re-lock in wait() <0x00000000c0004dd0> (a
java.lang.ref.ReferenceQueue$Lock)
at
jdk.internal.ref.CleanerImpl.run(java.base@11.0.2/CleanerImpl.java:148)
at java.lang.Thread.run(java.base@11.0.2/Thread.java:834)
at
jdk.internal.misc.InnocuousThread.run(java.base@11.0.2/InnocuousThread.java:134)
Locked ownable synchronizers:
- None
"DestroyJavaVM" #99 prio=5 os_prio=0 cpu=3657.83ms elapsed=226.60s
tid=0x000015554c010000 nid=0x8cf5 in Object.wait() [0x0000155555539000]
java.lang.Thread.State: WAITING (on object monitor)
at java.lang.Object.wait(java.base@11.0.2/Native Method)
- waiting on <no object reference available>
at java.lang.Thread.join(java.base@11.0.2/Thread.java:1305)
- waiting to re-lock in wait() <0x00000000c080b8e0> (a
java.util.prefs.FileSystemPreferences$4$1)
at java.lang.Thread.join(java.base@11.0.2/Thread.java:1379)
at
java.lang.ApplicationShutdownHooks.runHooks(java.base@11.0.2/ApplicationShutdownHooks.java:107)
at
java.lang.ApplicationShutdownHooks$1.run(java.base@11.0.2/ApplicationShutdownHooks.java:46)
at java.lang.Shutdown.runHooks(java.base@11.0.2/Shutdown.java:130)
at java.lang.Shutdown.shutdown(java.base@11.0.2/Shutdown.java:186)
- locked <0x00000000c0825408> (a java.lang.Class for java.lang.Shutdown)
Locked ownable synchronizers:
- None
"Sync Timer Thread" #28 prio=5 os_prio=0 cpu=0.59ms elapsed=226.60s
tid=0x000015554eecd800 nid=0x8d9b runnable [0x0000155511f51000]
java.lang.Thread.State: RUNNABLE
at
java.util.prefs.FileSystemPreferences.lockFile0(java.prefs@11.0.2/Native Method)
at
java.util.prefs.FileSystemPreferences.lockFile(java.prefs@11.0.2/FileSystemPreferences.java:921)
at
java.util.prefs.FileSystemPreferences.sync(java.prefs@11.0.2/FileSystemPreferences.java:748)
- locked <0x00000000c04db088> (a java.io.File)
- locked <0x00000000c043df78> (a java.util.prefs.FileSystemPreferences)
at
java.util.prefs.FileSystemPreferences.flush(java.prefs@11.0.2/FileSystemPreferences.java:843)
at
java.util.prefs.FileSystemPreferences.syncWorld(java.prefs@11.0.2/FileSystemPreferences.java:483)
at
java.util.prefs.FileSystemPreferences$4$1.run(java.prefs@11.0.2/FileSystemPreferences.java:461)
Locked ownable synchronizers:
- None
"Attach Listener" #100 daemon prio=9 os_prio=0 cpu=0.64ms elapsed=0.15s
tid=0x0000155500001800 nid=0x8f49 waiting on condition [0x0000000000000000]
java.lang.Thread.State: RUNNABLE
Locked ownable synchronizers:
- None
"VM Thread" os_prio=0 cpu=125.14ms elapsed=230.95s tid=0x000015554c4a0800
nid=0x8cfb runnable
"GC Thread#0" os_prio=0 cpu=33.20ms elapsed=230.98s tid=0x000015554c03b000
nid=0x8cf6 runnable
"GC Thread#1" os_prio=0 cpu=42.10ms elapsed=230.06s tid=0x0000155518001000
nid=0x8d0f runnable
"GC Thread#2" os_prio=0 cpu=47.34ms elapsed=230.05s tid=0x0000155518002800
nid=0x8d10 runnable
"GC Thread#3" os_prio=0 cpu=54.12ms elapsed=230.05s tid=0x0000155518004000
nid=0x8d11 runnable
"GC Thread#4" os_prio=0 cpu=47.06ms elapsed=230.05s tid=0x0000155518005800
nid=0x8d12 runnable
"GC Thread#5" os_prio=0 cpu=40.68ms elapsed=230.05s tid=0x0000155518007000
nid=0x8d13 runnable
"GC Thread#6" os_prio=0 cpu=46.12ms elapsed=230.05s tid=0x0000155518008800
nid=0x8d14 runnable
"GC Thread#7" os_prio=0 cpu=54.92ms elapsed=230.05s tid=0x000015551800a800
nid=0x8d15 runnable
"GC Thread#8" os_prio=0 cpu=43.19ms elapsed=230.05s tid=0x000015551800c000
nid=0x8d16 runnable
"GC Thread#9" os_prio=0 cpu=51.61ms elapsed=230.05s tid=0x000015551800d800
nid=0x8d17 runnable
"GC Thread#10" os_prio=0 cpu=56.13ms elapsed=230.05s tid=0x000015551800f000
nid=0x8d18 runnable
"GC Thread#11" os_prio=0 cpu=42.12ms elapsed=230.05s tid=0x0000155518010800
nid=0x8d19 runnable
"GC Thread#12" os_prio=0 cpu=42.81ms elapsed=230.05s tid=0x0000155518012000
nid=0x8d1a runnable
"GC Thread#13" os_prio=0 cpu=49.12ms elapsed=230.05s tid=0x0000155518013800
nid=0x8d1b runnable
"GC Thread#14" os_prio=0 cpu=57.79ms elapsed=230.05s tid=0x0000155518015800
nid=0x8d1c runnable
"GC Thread#15" os_prio=0 cpu=49.15ms elapsed=230.05s tid=0x0000155518017000
nid=0x8d1d runnable
"GC Thread#16" os_prio=0 cpu=49.51ms elapsed=230.05s tid=0x0000155518019000
nid=0x8d1e runnable
"GC Thread#17" os_prio=0 cpu=29.33ms elapsed=230.05s tid=0x000015551801a800
nid=0x8d1f runnable
"GC Thread#18" os_prio=0 cpu=42.10ms elapsed=230.05s tid=0x000015551801c800
nid=0x8d20 runnable
"GC Thread#19" os_prio=0 cpu=48.25ms elapsed=230.05s tid=0x000015551801e000
nid=0x8d21 runnable
"GC Thread#20" os_prio=0 cpu=49.91ms elapsed=230.05s tid=0x0000155518020000
nid=0x8d22 runnable
"GC Thread#21" os_prio=0 cpu=43.95ms elapsed=230.05s tid=0x0000155518021800
nid=0x8d23 runnable
"GC Thread#22" os_prio=0 cpu=42.69ms elapsed=230.05s tid=0x0000155518023000
nid=0x8d24 runnable
"GC Thread#23" os_prio=0 cpu=47.03ms elapsed=230.05s tid=0x0000155518025000
nid=0x8d25 runnable
"GC Thread#24" os_prio=0 cpu=17.44ms elapsed=228.11s tid=0x0000155518031000
nid=0x8d55 runnable
"GC Thread#25" os_prio=0 cpu=47.44ms elapsed=228.11s tid=0x0000155518032800
nid=0x8d56 runnable
"GC Thread#26" os_prio=0 cpu=48.87ms elapsed=228.11s tid=0x0000155518034000
nid=0x8d57 runnable
"GC Thread#27" os_prio=0 cpu=48.37ms elapsed=228.11s tid=0x0000155518035800
nid=0x8d58 runnable
"GC Thread#28" os_prio=0 cpu=39.22ms elapsed=228.11s tid=0x0000155518037000
nid=0x8d59 runnable
"GC Thread#29" os_prio=0 cpu=37.25ms elapsed=228.11s tid=0x0000155518038800
nid=0x8d5a runnable
"GC Thread#30" os_prio=0 cpu=39.75ms elapsed=228.11s tid=0x000015551803a000
nid=0x8d5b runnable
"GC Thread#31" os_prio=0 cpu=34.26ms elapsed=228.11s tid=0x000015551803b800
nid=0x8d5c runnable
"GC Thread#32" os_prio=0 cpu=42.36ms elapsed=228.11s tid=0x000015551803d800
nid=0x8d5d runnable
"GC Thread#33" os_prio=0 cpu=49.99ms elapsed=228.11s tid=0x000015551803f000
nid=0x8d5e runnable
"GC Thread#34" os_prio=0 cpu=24.54ms elapsed=227.52s tid=0x0000155518045800
nid=0x8d72 runnable
"GC Thread#35" os_prio=0 cpu=24.31ms elapsed=227.52s tid=0x0000155518047000
nid=0x8d73 runnable
"GC Thread#36" os_prio=0 cpu=24.18ms elapsed=227.52s tid=0x0000155518048800
nid=0x8d74 runnable
"GC Thread#37" os_prio=0 cpu=22.53ms elapsed=227.52s tid=0x000015551804a000
nid=0x8d75 runnable
"GC Thread#38" os_prio=0 cpu=29.60ms elapsed=227.52s tid=0x000015551804b800
nid=0x8d76 runnable
"GC Thread#39" os_prio=0 cpu=19.97ms elapsed=227.52s tid=0x000015551804d000
nid=0x8d77 runnable
"GC Thread#40" os_prio=0 cpu=31.85ms elapsed=227.52s tid=0x000015551804e800
nid=0x8d78 runnable
"GC Thread#41" os_prio=0 cpu=32.84ms elapsed=227.52s tid=0x0000155518050000
nid=0x8d79 runnable
"GC Thread#42" os_prio=0 cpu=24.11ms elapsed=227.52s tid=0x0000155518051800
nid=0x8d7a runnable
"G1 Main Marker" os_prio=0 cpu=3.27ms elapsed=230.98s tid=0x000015554c058800
nid=0x8cf7 runnable
"G1 Conc#0" os_prio=0 cpu=6.91ms elapsed=230.98s tid=0x000015554c05a800
nid=0x8cf8 runnable
"G1 Conc#1" os_prio=0 cpu=6.09ms elapsed=230.04s tid=0x0000155528001000
nid=0x8d26 runnable
"G1 Conc#2" os_prio=0 cpu=5.89ms elapsed=230.04s tid=0x0000155528003000
nid=0x8d27 runnable
"G1 Conc#3" os_prio=0 cpu=6.16ms elapsed=230.04s tid=0x0000155528004800
nid=0x8d28 runnable
"G1 Conc#4" os_prio=0 cpu=5.24ms elapsed=230.04s tid=0x0000155528006000
nid=0x8d29 runnable
"G1 Conc#5" os_prio=0 cpu=6.24ms elapsed=230.04s tid=0x0000155528007800
nid=0x8d2a runnable
"G1 Conc#6" os_prio=0 cpu=6.17ms elapsed=230.04s tid=0x0000155528009000
nid=0x8d2b runnable
"G1 Conc#7" os_prio=0 cpu=6.30ms elapsed=230.04s tid=0x000015552800b000
nid=0x8d2c runnable
"G1 Conc#8" os_prio=0 cpu=4.62ms elapsed=230.04s tid=0x000015552800c800
nid=0x8d2d runnable
"G1 Conc#9" os_prio=0 cpu=5.00ms elapsed=230.04s tid=0x000015552800e800
nid=0x8d2e runnable
"G1 Conc#10" os_prio=0 cpu=5.54ms elapsed=230.04s tid=0x0000155528010000
nid=0x8d2f runnable
"G1 Refine#0" os_prio=0 cpu=0.33ms elapsed=230.96s tid=0x000015554c43a000
nid=0x8cf9 runnable
"G1 Young RemSet Sampling" os_prio=0 cpu=54.93ms elapsed=230.96s
tid=0x000015554c43c000 nid=0x8cfa runnable
"VM Periodic Task Thread" os_prio=0 cpu=99.30ms elapsed=230.92s
tid=0x000015554c565000 nid=0x8d05 waiting on condition
JNI global refs: 32, weak refs: 0
