Jerry LRC and Gary R,
The point I'm making is true of every
branch of experimental science and engineering practice.  That includes
chemistry, which is the first branch that Peirce studied in detail.

JFS> Whenever logicians talk about anything x that exists in
any universe of discourse, they write ∃ in their logic.

JLRC> This assertion is not true for the chemical symbol
system.
The logicians are the ones who use the symbol ∃. 
Every mathematical theory, including arithmetic, uses its own notation and
terminology.  But every item and pattern of items in their theories have
an implicit ∃ in their theoretical foundations.
Short
summary:  Every scientific theory and every engineering plan belongs to
the universe of possibilities.  The science is a fallible approximation to
the universe of actuality, and the engineering is an approximation to a
scientific theory about something that might exist in some future state of
the universe of actuality.
Longer discussion:
Peirce insisted
that every scientific hypothesis or theory of any kind is fallible. 
Scientists themselves know that their best theories are reliable only on
the domains for which they have been thoroughly tested.  
They know
implicitly -- and often sttate explicitly -- that the most fundamental
things in their theories (fields, particles, quarks, strings, ...) are
hypothetical entities that exist in their mathematical models.   But the
evidence for their existence is based on long chains of inference from
fallible theories about observable things.
Engineers go even
further:  they admit that "Every model is wrong, but some are
useful." They admit that every theory they use for their plans and
designs is an approximation.  The math for the best available physics is
extremely complex, and the engineers  often use more computable theories
that are known to be false in detail.
And Gary, you have mentioned
that metaphysics does not require complex mathematics. That is true about
the theories of philosophers who don't know much math -- they're the
metaphysicians that Peirce denegrates.  But those who write about the
philosphy of science (Peirce, Galileo, Aristotle, for examples) study as
much math as the scientists they are talking about.
 Many of them
(same example) are or were outstanding scientists in their own right. 
Aristotle, for example, wrote a huge amount about biology, and he had his
students carry out experimental science.  His writings on embryology,
based on those experiments, were the state of the art in that subject for
many centuries.  Galileo also used experiments and mathematics to
interpret those experiments.
The metaphysics used in science is as
precise and mathematical as the sciences themselves.   It's true that the
metaphysics required for everyday experience does not require as much
math.  But "everyday experience" depends very strongly on the
culture, education, and technology of the people who have the experience. 
For Peirce, that is a very high standard.  Please read or reread
R602.htm.  I uploaded it to http://jfsowa.com/peirce/r602.htm . 

Note the last line of page 13:  "phaneroscopic research
requires a previous study of mathematics."  For Peirce, that includes
everything in NEM.
John
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