Hi Bishwa, can you be more precise what you mean by "label"? If the secondary structure is defined in the header of your PDB file, PyMOL can show cartoon representation, show text labels on C-alpha atoms and color by secondary structure.
PyMOL> as cartoon PyMOL> label name CA, ss PyMOL> color red, ss H PyMOL> color yellow, ss S Cheers, Thomas Bishwa Subedi wrote, On 05/08/13 13:33: > Hi All, > > I am using Pymol to make figures for my publication. I am not sure if > there has been a discussion earlier but I would like to know how we > can label the secondary structures (helices and strands) using Pymol. > I have them defined in my header file using DSSP. > > Thank you in advance. > > Bishwa Subedi -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Learn Graph Databases - Download FREE O'Reilly Book "Graph Databases" is the definitive new guide to graph databases and their applications. This 200-page book is written by three acclaimed leaders in the field. The early access version is available now. Download your free book today! http://p.sf.net/sfu/neotech_d2d_may _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
