r-sig-phylo  

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• 2014/07/08 [R-sig-phylo] Why "dist.nodes" do no work if I use long tree? Alexey Fomin
• 2014/07/07 [R-sig-phylo] Pearson correlation and tree structure Inigo Masters
• 2014/07/06 Re: [R-sig-phylo] PGLS: residuals vs. phyres Liam J. Revell
• 2014/07/06 [R-sig-phylo] PGLS: residuals vs. phyres Sereina Graber
• 2014/07/06 [R-sig-phylo] Whether exists in "R" the output of result in a file? Alexey Fomin
• 2014/07/04 [R-sig-phylo] Error in all.branches.matrix with Bisse models Frenzke
• 2014/07/02 Re: [R-sig-phylo] Stochastic mapping & discrete characters Naama Kopelman
• 2014/07/01 [R-sig-phylo] REMINDER: Phylogenetic methods and the fossil record GSA Vancouver 2014 topical session James Lamsdell
• 2014/07/01 Re: [R-sig-phylo] Stochastic mapping & discrete characters Liam J. Revell
• 2014/07/01 [R-sig-phylo] Stochastic mapping & discrete characters Naama Kopelman
• 2014/07/01 [R-sig-phylo] hypothesis-testing help: trees and leave characters Inigo Masters
• 2014/06/27 Re: [R-sig-phylo] Extract lambda from compare.gee model Liam J. Revell
• 2014/06/27 [R-sig-phylo] Extract lambda from compare.gee model Cody Dey
• 2014/06/26 Re: [R-sig-phylo] negative lambda Orme, David
• 2014/06/26 Re: [R-sig-phylo] Pegas Tajimas Test Emmanuel Paradis
• 2014/06/25 Re: [R-sig-phylo] Pegas Tajimas Test Vojtěch Zeisek
• 2014/06/25 [R-sig-phylo] Pegas Tajimas Test Peters, Stuart
• 2014/06/24 Re: [R-sig-phylo] negative lambda Luke Matthews
• 2014/06/24 [R-sig-phylo] warning MCMC: In log(sum(root.p * d.root)) : NaNs produced Frenzke
• 2014/06/23 Re: [R-sig-phylo] negative lambda when using "ape" package Renata Brandt
• 2014/06/19 [R-sig-phylo] Search for the presence of a topology in a given tree? Cacau Centurion
• 2014/06/19 [R-sig-phylo] plotting arrows (or triangles) at nodes during ancestral state reconstruction Agus Camacho
• 2014/06/19 [R-sig-phylo] Error in fitDiscrete Frenzke
• 2014/06/17 Re: [R-sig-phylo] why a raster generated from a set of coordinates leaves some coordinates outside it? Agus Camacho
• 2014/06/15 [R-sig-phylo] Very long tree. Alexey Fomin
• 2014/06/12 [R-sig-phylo] Errors with tree construct by [ape] Zhou, K (mmb)
• 2014/06/11 [R-sig-phylo] why a raster generated from a set of coordinates leaves some coordinates outside it? Agus Camacho
• 2014/06/10 [R-sig-phylo] Tree-for-all hackathon Brian O'Meara
• 2014/06/10 [R-sig-phylo] Root-to-tip regression Rosemary McCloskey
• 2014/06/10 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/10 Re: [R-sig-phylo] edge color in phylomorphospace3d Paolo Piras
• 2014/06/10 Re: [R-sig-phylo] edge color in phylomorphospace3d Liam J. Revell
• 2014/06/10 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/10 Re: [R-sig-phylo] How to use which.edge {ape} Gilles Benjamin Leduc
• 2014/06/10 Re: [R-sig-phylo] autocorrelation nodes in phylogeny Renske Onstein
• 2014/06/10 Re: [R-sig-phylo] edge color in phylomorphospace3d Jonas Eberle
• 2014/06/09 Re: [R-sig-phylo] autocorrelation nodes in phylogeny Dan Rabosky
• 2014/06/09 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/09 Re: [R-sig-phylo] autocorrelation nodes in phylogeny Dan Rabosky
• 2014/06/09 [R-sig-phylo] autocorrelation nodes in phylogeny Renske Onstein
• 2014/06/09 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/09 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/08 [R-sig-phylo] edge color in phylomorphospace3d Paolo Piras
• 2014/06/07 [R-sig-phylo] problem with raxml (phyloch) john d
• 2014/06/05 Re: [R-sig-phylo] How to use which.edge {ape} Gilles Benjamin Leduc
• 2014/06/04 Re: [R-sig-phylo] How to use which.edge {ape} Liam J. Revell
• 2014/06/04 Re: [R-sig-phylo] Phytools rerootingMethod(): error in 'colnames, -' Liam J. Revell
• 2014/06/04 [R-sig-phylo] How to use which.edge {ape} Gilles Benjamin Leduc
• 2014/06/04 [R-sig-phylo] Phytools rerootingMethod(): error in 'colnames,-' Brown, Jonathan
• 2014/06/03 Re: [R-sig-phylo] (no subject) catherine reeb
• 2014/06/03 [R-sig-phylo] Functional diversity controlling for phylogenetic relatedness Kaspar Delhey
• 2014/06/03 Re: [R-sig-phylo] Early burst branch rescale Julien Clavel
• 2014/06/03 Re: [R-sig-phylo] (no subject) catherine reeb
• 2014/06/03 Re: [R-sig-phylo] (no subject) Klaus Schliep
• 2014/06/03 Re: [R-sig-phylo] (no subject) catherine reeb
• 2014/06/03 [R-sig-phylo] (no subject) catherine reeb
• 2014/06/02 Re: [R-sig-phylo] Early burst branch rescale David Bapst
• 2014/06/02 Re: [R-sig-phylo] Early burst branch rescale Julien Clavel
• 2014/06/02 Re: [R-sig-phylo] Early burst branch rescale Slater, Graham
• 2014/06/02 [R-sig-phylo] Early burst branch rescale Jonathan Mitchell
• 2014/06/02 Re: [R-sig-phylo] Triploid microsatellites? Jombart, Thibaut
• 2014/06/02 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/02 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/06/01 Re: [R-sig-phylo] incorrect tip labels with tiplabels() function Liam J. Revell
• 2014/06/01 [R-sig-phylo] incorrect tip labels with tiplabels() function Jonathan Drury
• 2014/06/01 [R-sig-phylo] geomorph 2.1 Adams, Dean [EEOBS]
• 2014/05/30 Re: [R-sig-phylo] Exponential function on make.bd.t Gustavo Burin Ferreira
• 2014/05/30 Re: [R-sig-phylo] Triploid microsatellites? Niklaus Grunwald
• 2014/05/30 Re: [R-sig-phylo] Triploid microsatellites? Gilles Benjamin Leduc
• 2014/05/30 Re: [R-sig-phylo] Triploid microsatellites? Jombart, Thibaut
• 2014/05/30 Re: [R-sig-phylo] trait simulation function (Krzysztof Bartoszek) krzysztofbartoszek
• 2014/05/30 Re: [R-sig-phylo] Triploid microsatellites? Emmanuel Paradis
• 2014/05/30 Re: [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/05/30 Re: [R-sig-phylo] Exponential function on make.bd.t Rich FitzJohn
• 2014/05/29 Re: [R-sig-phylo] Triploid microsatellites? Jombart, Thibaut
• 2014/05/29 [R-sig-phylo] Exponential function on make.bd.t Gustavo Burin Ferreira
• 2014/05/29 Re: [R-sig-phylo] Triploid microsatellites? Gilles Benjamin Leduc
• 2014/05/29 [R-sig-phylo] Triploid microsatellites? Vojtěch Zeisek
• 2014/05/29 Re: [R-sig-phylo] cophyloplot: how to marks links differently Juan Antonio Balbuena
• 2014/05/28 Re: [R-sig-phylo] trait simulation function Liam J. Revell
• 2014/05/28 [R-sig-phylo] trait simulation function Gabriela Decker
• 2014/05/28 Re: [R-sig-phylo] cophyloplot: how to marks links differently Emmanuel Paradis
• 2014/05/27 Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0 Gustavo Burin Ferreira
• 2014/05/27 Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0 Jonathan Chang
• 2014/05/27 Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0 Jonathan Chang
• 2014/05/27 Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0 Gustavo Burin Ferreira
• 2014/05/27 [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0 Jonathan Chang
• 2014/05/27 [R-sig-phylo] cophyloplot: how to marks links differently Juan Antonio Balbuena
• 2014/05/23 Re: [R-sig-phylo] Transition matrix for ace in ape Hilmar Lapp
• 2014/05/23 Re: [R-sig-phylo] Transition matrix for ace in ape Rosemary McCloskey
• 2014/05/23 [R-sig-phylo] Transition matrix for ace in ape Rosemary McCloskey
• 2014/05/22 Re: [R-sig-phylo] drop.tip in ape using trim.internal=FALSE Matthew Nelsen
• 2014/05/22 [R-sig-phylo] drop.tip in ape using trim.internal=FALSE Matthew Nelsen
• 2014/05/22 [R-sig-phylo] starting.point.bisse mu=0 Frenzke
• 2014/05/21 Re: [R-sig-phylo] Distances from nods to the root. Emmanuel Paradis
• 2014/05/20 Re: [R-sig-phylo] Distances from nods to the root. Liam J. Revell
• 2014/05/20 Re: [R-sig-phylo] Distances from nods to the root. François Michonneau
• 2014/05/20 [R-sig-phylo] Distances from nods to the root. Alexey Fomin
• 2014/05/18 Re: [R-sig-phylo] plot trees after different branch transformations Agus Camacho
• 2014/05/16 Re: [R-sig-phylo] plot trees after different branch transformations Agus Camacho
• 2014/05/16 Re: [R-sig-phylo] Cross-validation with independent contrasts Diego Bilski
• 2014/05/16 Re: [R-sig-phylo] plot trees after different branch transformations Luke Harmon
• 2014/05/16 Re: [R-sig-phylo] plot trees after different branch transformations Liam J. Revell
• 2014/05/16 [R-sig-phylo] plot trees after different branch transformations Agus Camacho
• 2014/05/16 Re: [R-sig-phylo] Cross-validation with independent contrasts Joe Felsenstein
• 2014/05/16 Re: [R-sig-phylo] Concentrated changes test Theodore Garland Jr
• 2014/05/16 [R-sig-phylo] Concentrated changes test Matt Pennell
• 2014/05/16 Re: [R-sig-phylo] Cross-validation with independent contrasts Theodore Garland Jr
• 2014/05/16 [R-sig-phylo] Cross-validation with independent contrasts Diego Bilski
• 2014/05/15 Re: [R-sig-phylo] edge colors in ape's plot.phylo Liam J. Revell
• 2014/05/15 [R-sig-phylo] edge colors in ape's plot.phylo Rosemary McCloskey
• 2014/05/15 [R-sig-phylo] Noob Questions Matt Curcio
• 2014/05/14 Re: [R-sig-phylo] plot bars across tips of a circular phylogeny Liam J. Revell
• 2014/05/14 Re: [R-sig-phylo] plot bars across tips of a circular phylogeny Emmanuel Paradis
• 2014/05/14 Re: [R-sig-phylo] plot bars across tips of a circular phylogeny Liam J. Revell
• 2014/05/14 [R-sig-phylo] plot bars across tips of a circular phylogeny Matthew Helmus
• 2014/05/14 [R-sig-phylo] Conference on Modern Phylogenetic Comparative Methods and their Application in Evolutionary Biology Alejandro Gonzalez
• 2014/05/12 Re: [R-sig-phylo] 'phylogenetic signal' of a tree independently from a character Emmanuel Paradis
• 2014/05/12 Re: [R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class Emmanuel Paradis
• 2014/05/12 [R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class Wesley Goi
• 2014/05/10 [R-sig-phylo] 'phylogenetic signal' of a tree independently from a character Mattia Prosperi
• 2014/05/08 Re: [R-sig-phylo] Simulate discrete character evolution, including internal nodes. Liam J. Revell
• 2014/05/08 [R-sig-phylo] Simulate discrete character evolution, including internal nodes. Ferguson-Gow, Henry
• 2014/05/06 Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size Liam J. Revell
• 2014/05/06 Re: [R-sig-phylo] What order are the tips of a tree plotted in? Emmanuel Paradis
• 2014/05/06 [R-sig-phylo] Postdoc in phylogenetic comparative methods Liam J. Revell
• 2014/05/06 Re: [R-sig-phylo] What order are the tips of a tree plotted in? Andrew Hipp
• 2014/05/06 [R-sig-phylo] What order are the tips of a tree plotted in? Ferguson-Gow, Henry
• 2014/05/05 Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size imran khaliq
• 2014/05/05 Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size Brian O'Meara
• 2014/05/05 Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size dga...@huskers.unl.edu
• 2014/05/05 [R-sig-phylo] Phylogenetic signal, variation in rates and sample size imran khaliq
• 2014/05/03 Re: [R-sig-phylo] Difference running Rscript vs source with ape library Emmanuel Paradis
• 2014/05/02 Re: [R-sig-phylo] problem with phylock package Christoph Heibl
• 2014/05/02 [R-sig-phylo] problem with phylock package Mariana Vasconcellos
• 2014/05/02 Re: [R-sig-phylo] generate liability/threshold plot from ancThresh Liam J. Revell
• 2014/05/02 [R-sig-phylo] generate liability/threshold plot from ancThresh John Denton
• 2014/05/02 [R-sig-phylo] Difference running Rscript vs source with ape library Carlos Anderson
• 2014/04/29 [R-sig-phylo] Controlling for MRCA in asreml using a phylogeny Libby Beckman
• 2014/04/28 Re: [R-sig-phylo] drop trees from multiphylo list David Bapst
• 2014/04/28 [R-sig-phylo] drop trees from multiphylo list John Denton
• 2014/04/24 Re: [R-sig-phylo] fitting multiple OU optima Carl Boettiger
• 2014/04/23 [R-sig-phylo] How to plot pgls results? Lina Moreno Azocar,
• 2014/04/22 Re: [R-sig-phylo] "Ape" package. Frederico Faleiro
• 2014/04/22 [R-sig-phylo] fitting multiple OU optima Santiago Sanchez-Ramirez
• 2014/04/22 Re: [R-sig-phylo] fitting multiple OU optima Florian Boucher
• 2014/04/22 [R-sig-phylo] fitting multiple OU optima Paolo Piras
• 2014/04/20 Re: [R-sig-phylo] "Ape" package. Klaus Schliep
• 2014/04/16 Re: [R-sig-phylo] Importing single trees from a tree list Agus Camacho
• 2014/04/16 Re: [R-sig-phylo] Importing single trees from a tree list Liam J. Revell
• 2014/04/16 [R-sig-phylo] Phylogenetic Comparative Tools for High-dimensional Data Emma Sherratt
• 2014/04/16 Re: [R-sig-phylo] Importing single trees from a tree list Liam J. Revell
• 2014/04/16 Re: [R-sig-phylo] Importing single trees from a tree list Agus Camacho
• 2014/04/16 [R-sig-phylo] Importing single trees from a tree list Agus Camacho
• 2014/04/16 [R-sig-phylo] MCMCglmm prior issues David Bradley
• 2014/04/15 Re: [R-sig-phylo] write.nexus.data with DATATYPE=STANDARD Liam J. Revell
• 2014/04/15 [R-sig-phylo] write.nexus.data with DATATYPE=STANDARD Ryan Felice
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Chris Buddenhagen
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Eduardo Castro Nallar
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Eduardo Ascarrunz
• 2014/04/14 Re: [R-sig-phylo] scale root edge of outgroup Emmanuel Paradis
• 2014/04/14 [R-sig-phylo] scale root edge of outgroup Walter, Mathias
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Liam J. Revell
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Eduardo Ascarrunz
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Emmanuel Paradis
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Chris Buddenhagen
• 2014/04/14 Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Mattia Prosperi
• 2014/04/14 [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies Chris Buddenhagen
• 2014/04/12 Re: [R-sig-phylo] chronos function Emmanuel Paradis
• 2014/04/11 Re: [R-sig-phylo] "ape" package. Hilmar Lapp
• 2014/04/11 [R-sig-phylo] "ape" package. Alexey Fomin
• 2014/04/09 Re: [R-sig-phylo] OU rescale of a tree Julien Clavel
• 2014/04/09 [R-sig-phylo] chronos function Fabricia Nascimento
• 2014/04/09 Re: [R-sig-phylo] fitdAICrc Dan Rabosky
• 2014/04/09 [R-sig-phylo] Related OU rescale of tree question Tristan Stayton
• 2014/04/09 [R-sig-phylo] fitdAICrc Jorge Avaria Llautureo
• 2014/04/09 [R-sig-phylo] please post postdoc position Lee Hsiang Liow
• 2014/04/08 Re: [R-sig-phylo] Fatal Crash in ancestral.pars in phangorn Klaus Schliep
• 2014/04/08 [R-sig-phylo] Fatal Crash in ancestral.pars in phangorn David Bapst
• 2014/04/08 Re: [R-sig-phylo] OU rescale of a tree Julien Clavel
• 2014/04/08 [R-sig-phylo] Phylogenetic methods and the fossil record GSA Vancouver 2014 topic session Lamsdell, James
• 2014/04/08 Re: [R-sig-phylo] OU rescale of a tree Liam J. Revell
• 2014/04/08 Re: [R-sig-phylo] chronos and gammaStat Klaus Schliep
• 2014/04/08 [R-sig-phylo] OU rescale of a tree Nicolas Campione
• 2014/04/08 Re: [R-sig-phylo] chronos and gammaStat Fabricia Nascimento
• 2014/04/08 Re: [R-sig-phylo] chronos and gammaStat Klaus Schliep
• 2014/04/08 Re: [R-sig-phylo] chronos and gammaStat Fabricia Nascimento
• 2014/04/08 Re: [R-sig-phylo] chronos and gammaStat Klaus Schliep
• 2014/04/08 [R-sig-phylo] chronos and gammaStat Fabricia Nascimento
• 2014/04/08 Re: [R-sig-phylo] apTreeshape mblum
• 2014/04/08 [R-sig-phylo] apTreeshape Fabricia Nascimento
• 2014/04/07 [R-sig-phylo] error in chronopl Nachiket Shankar
• 2014/04/05 Re: [R-sig-phylo] Error in diversitree with MuSSE models Rich FitzJohn
• 2014/04/04 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 75, Issue 4 Arbuckle, Kevin
• 2014/04/03 Re: [R-sig-phylo] Error in diversitree with MuSSE models (Arbuckle, Kevin) Daniel Caetano
• 2014/04/02 Re: [R-sig-phylo] Error in diversitree with MuSSE models Arbuckle, Kevin
• 2014/04/01 [R-sig-phylo] Error in diversitree with MuSSE models Arbuckle, Kevin
• 2014/04/01 Re: [R-sig-phylo] ape cophyloplot strange horizontal lines Emmanuel Paradis
• 2014/04/01 Re: [R-sig-phylo] Help with 3D NMDS Plot Rob Lanfear
• 2014/03/31 [R-sig-phylo] ape cophyloplot strange horizontal lines Johannes Björk

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