Messages by Date
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2014/03/14
[R-sig-phylo] ANOVA for pgls model with marginal sum of squares in caper
melissah rowe
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2014/03/13
[R-sig-phylo] FW: Reading sets of multiple DNA sequence alignments
dga...@huskers.unl.edu
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2014/03/13
[R-sig-phylo] RelTime algorithm
Santiago Claramunt
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
Liam J. Revell
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
Fabricia Nascimento
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
François Michonneau
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2014/03/13
[R-sig-phylo] Reading sets of multiple DNA sequence alignments
Fabricia Nascimento
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2014/03/12
[R-sig-phylo] Multivariate Model Selection
Fabio de A. Machado
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2014/03/11
Re: [R-sig-phylo] Looking for Data Mining Tools
Hilmar Lapp
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2014/03/11
[R-sig-phylo] Looking for Data Mining Tools
Matt Curcio
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2014/03/09
Re: [R-sig-phylo] phyloxml
Sam Brown
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2014/03/09
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 74, Issue 4
Sam Brown
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2014/03/08
Re: [R-sig-phylo] Generate all possible trees for n species
Augusto Ribas
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2014/03/08
[R-sig-phylo] How to speed up pblm in picante
Cecile Ane
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2014/03/08
Re: [R-sig-phylo] Generate all possible trees for n species
Klaus Schliep
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2014/03/08
[R-sig-phylo] Generate all possible trees for n species
Augusto Ribas
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2014/03/07
Re: [R-sig-phylo] Fwd: Fwd: phyloxml
Mark Holder
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2014/03/07
Re: [R-sig-phylo] Fwd: Fwd: phyloxml
François Michonneau
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2014/03/07
[R-sig-phylo] Fwd: Fwd: phyloxml
Hilmar Lapp
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2014/03/07
Re: [R-sig-phylo] BAMM: Bayesian analyses of macroevolutionary rates
Paolo Piras
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2014/03/07
[R-sig-phylo] BAMM: Bayesian analyses of macroevolutionary rates
Dan Rabosky
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2014/03/07
Re: [R-sig-phylo] Phylogenetic regression available in R (Grafen, 1989)
Gustavo Paterno
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2014/03/07
Re: [R-sig-phylo] Phylogenetic regression available in R (Grafen, 1989)
Emmanuel Paradis
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2014/03/06
[R-sig-phylo] phyloxml
Ondřej Mikula
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2014/03/06
Re: [R-sig-phylo] phylogenetic MANOVA
Luke Harmon
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2014/03/06
Re: [R-sig-phylo] phylogenetic MANOVA
Anna Kostikova
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2014/03/06
Re: [R-sig-phylo] phylogenetic MANOVA
Paolo Piras
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2014/03/06
Re: [R-sig-phylo] phylogenetic MANOVA
Anna Kostikova
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2014/03/06
[R-sig-phylo] phylogenetic MANOVA
Frédérich Bruno
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2014/03/05
Re: [R-sig-phylo] Phylogenetic regression available in R (Grafen, 1989)
Gustavo Paterno
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2014/03/05
Re: [R-sig-phylo] Phylogenetic regression available in R (Grafen, 1989)
Xavier Prudent
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2014/03/05
[R-sig-phylo] Phylogenetic regression available in R (Grafen, 1989)
Gustavo Paterno
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2014/03/04
[R-sig-phylo] TAship for Bogota phylogenetics course
Liam J. Revell
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2014/03/03
[R-sig-phylo] U. los Andes Bogota phylogenetics in R workshop
Liam J. Revell
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2014/03/03
[R-sig-phylo] How to speed up pblm in picante
Miguel Verdu
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2014/02/27
Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Emmanuel Paradis
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2014/02/26
[R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Matt Curcio
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2014/02/25
Re: [R-sig-phylo] dropping taxa from list of trees
Slater, Graham
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2014/02/25
[R-sig-phylo] dropping taxa from list of trees
Juanita Rodriguez
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2014/02/25
Re: [R-sig-phylo] utilise more data by making polytomies
David Bapst
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2014/02/25
Re: [R-sig-phylo] utilise more data by making polytomies
Julien Clavel
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2014/02/25
Re: [R-sig-phylo] utilise more data by making polytomies
Liam J. Revell
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2014/02/25
[R-sig-phylo] utilise more data by making polytomies
Ferguson-Gow, Henry
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2014/02/19
[R-sig-phylo] Error message in calling Clustal (ape)
Danae Dodge
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2014/02/19
Re: [R-sig-phylo] Jane input file
François Michonneau
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2014/02/19
[R-sig-phylo] Jane input file
Sean Downey
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2014/02/19
[R-sig-phylo] Heterozygosity on sequences
Benjamin Ward (ENV)
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2014/02/19
[R-sig-phylo] export R data to Arlequin
Gilles Benjamin Leduc
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2014/02/17
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Santiago Sánchez
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2014/02/17
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Jeremy Beaulieu
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2014/02/17
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Santiago Sanchez
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2014/02/17
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Christofer Clemente
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2014/02/16
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Christofer Clemente
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2014/02/15
[R-sig-phylo] post-hoc comparisons in gls
Jorge Sánchez Gutiérrez
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2014/02/15
Re: [R-sig-phylo] Easiest way to get the stem age of a clade?
Simon Greenhill
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2014/02/12
Re: [R-sig-phylo] Easiest way to get the stem age of a clade?
Liam J. Revell
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2014/02/12
[R-sig-phylo] Easiest way to get the stem age of a clade?
Simon Greenhill
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2014/02/12
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
krzysztofbartoszek
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2014/02/11
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Brian O'Meara
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2014/02/11
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Santiago Sánchez
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2014/02/11
Re: [R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Brian O'Meara
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2014/02/11
[R-sig-phylo] Fit BM, OU (1 theta), OU (2 theta) with the same function
Santiago Sánchez
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2014/02/10
Re: [R-sig-phylo] help with the fitdAICrc.batch function in laser
Dan Rabosky
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2014/02/10
[R-sig-phylo] help with the fitdAICrc.batch function in laser
Alicia Toon
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2014/02/07
[R-sig-phylo] Convert a data frame to Newick structure
rohan1925 .
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2014/02/07
[R-sig-phylo] Convert a data frame to Newick structure
rohan bareja
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2014/02/03
Re: [R-sig-phylo] off-diagonal parameters in multivariate ouch
Chad Eliason
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2014/02/02
Re: [R-sig-phylo] Midpoint rooting routine?
Klaus Schliep
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2014/02/01
[R-sig-phylo] simulate continuous character evolution conditional on known discrete character
Tristan Lefebure
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2014/01/31
Re: [R-sig-phylo] Mesquite issues
Paolo Piras
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2014/01/31
Re: [R-sig-phylo] Problems with bootstraps of NJ tree from SSRs data
Vojtěch Zeisek
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2014/01/31
Re: [R-sig-phylo] Mesquite issues
Alejandro Gonzalez
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2014/01/31
[R-sig-phylo] Mesquite issues
Paolo Piras
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2014/01/30
Re: [R-sig-phylo] Midpoint rooting routine?
Todd Oakley
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2014/01/30
Re: [R-sig-phylo] Midpoint rooting routine?
Joe Felsenstein
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2014/01/30
Re: [R-sig-phylo] Midpoint rooting routine?
Liam J. Revell
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2014/01/30
Re: [R-sig-phylo] Midpoint rooting routine?
Joe Felsenstein
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2014/01/30
Re: [R-sig-phylo] Midpoint rooting routine?
Liam J. Revell
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2014/01/30
[R-sig-phylo] Midpoint rooting routine?
Todd Oakley
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2014/01/30
Re: [R-sig-phylo] Error in read.beast()
Mariana Vasconcellos
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2014/01/30
Re: [R-sig-phylo] Error in read.beast()
Nathan Steadman Upham
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2014/01/29
Re: [R-sig-phylo] How to test whether a tree exists in a NeighbourNet network
Sean Downey
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2014/01/28
Re: [R-sig-phylo] Meaning of output from phytools findMRCA ?
Liam J. Revell
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2014/01/28
[R-sig-phylo] Meaning of output from phytools findMRCA ?
Gabriel Yedid
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2014/01/27
[R-sig-phylo] collapsing a tree to higher-order taxa
Szymek Drobniak
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2014/01/27
[R-sig-phylo] Error in fitDiscrete
Nachiket Shankar
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2014/01/26
[R-sig-phylo] comar.gee
Esther Sebastian
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2014/01/24
Re: [R-sig-phylo] OUwie $solution.se
Jeremy Beaulieu
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2014/01/24
Re: [R-sig-phylo] OUwie diagn=T Error in dim(edges)
Maria Ghazali
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2014/01/24
Re: [R-sig-phylo] OUwie diagn=T Error in dim(edges)
Brian O'Meara
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2014/01/24
[R-sig-phylo] OUwie diagn=T Error in dim(edges)
Maria Ghazali
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2014/01/23
[R-sig-phylo] OUwie $solution.se
Maria Ghazali
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2014/01/23
Re: [R-sig-phylo] off-diagonal parameters in multivariate ouch (Krzysztof Bartoszek)
krzysztofbartoszek
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2014/01/23
Re: [R-sig-phylo] off-diagonal parameters in multivariate ouch
Aaron King
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2014/01/23
Re: [R-sig-phylo] help with dist.multiPhylo needed
Juan Antonio Balbuena
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2014/01/23
[R-sig-phylo] help with dist.multiPhylo needed
Juan Antonio Balbuena
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2014/01/22
Re: [R-sig-phylo] off-diagonal parameters in multivariate ouch
Aaron King
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2014/01/22
Re: [R-sig-phylo] How can lambda be low in a pGLS ancova and also high for the variables involved.
Agus Camacho
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2014/01/22
Re: [R-sig-phylo] How can lambda be low in a pGLS ancova and also high for the variables involved.
Matt Pennell
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2014/01/22
Re: [R-sig-phylo] The Curious Behavior of is.binary.tree
David Bapst
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2014/01/22
[R-sig-phylo] How can lambda be low in a pGLS ancova and also high for the variables involved.
Agus Camacho
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2014/01/22
Re: [R-sig-phylo] The Curious Behavior of is.binary.tree
Emmanuel Paradis
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2014/01/21
[R-sig-phylo] off-diagonal parameters in multivariate ouch
Chad Eliason
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2014/01/21
Re: [R-sig-phylo] Error in read.beast()
Santiago Sánchez
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2014/01/21
Re: [R-sig-phylo] Error in read.beast()
Mariana Vasconcellos
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2014/01/21
Re: [R-sig-phylo] Error in read.beast()
Santiago Sánchez
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2014/01/20
[R-sig-phylo] Error in read.beast()
Mariana Vasconcellos
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2014/01/20
Re: [R-sig-phylo] Probably silly question about maps
Vojtěch Zeisek
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2014/01/18
Re: [R-sig-phylo] Probably silly question about maps
Liam J. Revell
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2014/01/17
Re: [R-sig-phylo] Displaying posterior probability in BEAST tree output
Eliot Miller
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2014/01/17
[R-sig-phylo] Displaying posterior probability in BEAST tree output
Mariana Vasconcellos
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2014/01/16
Re: [R-sig-phylo] The Curious Behavior of is.binary.tree
David Bapst
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2014/01/15
Re: [R-sig-phylo] The Curious Behavior of is.binary.tree
Liam J. Revell
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2014/01/15
[R-sig-phylo] The Curious Behavior of is.binary.tree
David Bapst
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2014/01/13
Re: [R-sig-phylo] Probably silly question about maps
Vojtěch Zeisek
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2014/01/13
[R-sig-phylo] Probably silly question about maps
Vojtěch Zeisek
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2014/01/10
Re: [R-sig-phylo] Method for calculating VIFs with a 'pgls' object? (Max Farrell)
Luke Matthews
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2014/01/06
[R-sig-phylo] pre-release of ape 3.1
Emmanuel Paradis
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2014/01/03
[R-sig-phylo] Method for calculating VIFs with a 'pgls' object?
Max Farrell
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2014/01/02
Re: [R-sig-phylo] Sampling from all bifurcating and multifurcating trees
Eduardo Ascarrunz
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2014/01/02
Re: [R-sig-phylo] Sampling from all bifurcating and multifurcating trees
Eduardo Ascarrunz
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2013/12/25
Re: [R-sig-phylo] Sampling from all bifurcating and multifurcating trees
Eduardo Ascarrunz
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2013/12/24
Re: [R-sig-phylo] Sampling from all bifurcating and multifurcating trees
Joe Felsenstein
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2013/12/24
[R-sig-phylo] Sampling from all bifurcating and multifurcating trees
Eduardo Ascarrunz
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2013/12/23
Re: [R-sig-phylo] R help generating a heat map
Joe Felsenstein
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2013/12/23
Re: [R-sig-phylo] R help generating a heat map
Eduardo Ascarrunz
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2013/12/23
Re: [R-sig-phylo] R help generating a heat map
Liam J. Revell
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2013/12/23
Re: [R-sig-phylo] R help generating a heat map
Eduardo Ascarrunz
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2013/12/19
[R-sig-phylo] R help generating a heat map
Samantha Hilber
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2013/12/19
Re: [R-sig-phylo] Warning messages if using family=poisson in compar.gee, and changing link function
Emmanuel Paradis
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2013/12/18
Re: [R-sig-phylo] Using the function mst in APE to produce coloured graphs
Emmanuel Paradis
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2013/12/18
[R-sig-phylo] Using the function mst in APE to produce coloured graphs
Stefani
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2013/12/17
[R-sig-phylo] Warning messages if using family=poisson in compar.gee, and changing link function
Nina Hobbhahn
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2013/12/16
Re: [R-sig-phylo] plotting support value
Liam J. Revell
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2013/12/16
Re: [R-sig-phylo] plotting support value
Thomas Manke
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2013/12/16
Re: [R-sig-phylo] plotting support value
Emmanuel Paradis
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2013/12/16
[R-sig-phylo] plotting support value
Thomas Manke
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2013/12/12
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Nina Hobbhahn
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2013/12/12
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Emmanuel Paradis
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2013/12/11
Re: [R-sig-phylo] Mismatch distribution (pegas): expected versus empirical and other questions
Emmanuel Paradis
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2013/12/10
Re: [R-sig-phylo] fitting cuadratic model using gnls
Jorge Sánchez Gutiérrez
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2013/12/10
Re: [R-sig-phylo] Mismatch distribution (pegas): expected versus empirical and other questions
David Winter
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2013/12/10
Re: [R-sig-phylo] fitting cuadratic model using gnls
Ben Bolker
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2013/12/10
Re: [R-sig-phylo] fitting cuadratic model using gnls
Theodore Garland Jr
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2013/12/10
[R-sig-phylo] fitting cuadratic model using gnls
Jorge Sánchez Gutiérrez
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2013/12/10
[R-sig-phylo] Mismatch distribution (pegas): expected versus empirical and other questions
Alastair Potts
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2013/12/09
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Nina Hobbhahn
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2013/12/07
Re: [R-sig-phylo] write.tree doesn't respect scipen
Rosemary McCloskey
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2013/12/07
Re: [R-sig-phylo] write.tree doesn't respect scipen
François Michonneau
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2013/12/07
[R-sig-phylo] write.tree doesn't respect scipen
Rosemary McCloskey
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2013/12/06
Re: [R-sig-phylo] Ancestral state reconstruction
Liam J. Revell
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2013/12/06
Re: [R-sig-phylo] Ancestral state reconstruction
Szymek Drobniak
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2013/12/06
Re: [R-sig-phylo] Ancestral state reconstruction
Liam J. Revell
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2013/12/06
[R-sig-phylo] Ancestral state reconstruction
Szymek Drobniak
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2013/12/06
Re: [R-sig-phylo] best fit vs normality of residuals
Agus Camacho
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2013/12/04
Re: [R-sig-phylo] Phylogenetic Regression in R (Grafen method)
Gustavo Paterno
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2013/12/03
Re: [R-sig-phylo] best fit vs normality of residuals
Theodore Garland Jr
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2013/12/03
Re: [R-sig-phylo] best fit vs normality of residuals
Luke Matthews
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2013/12/03
[R-sig-phylo] Phylogenetic Regression in R (Grafen method)
Gustavo Paterno
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2013/12/03
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Emmanuel Paradis
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2013/12/03
Re: [R-sig-phylo] combined CI across trees (Krzysztof Bartoszek)
krzysztofbartoszek
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2013/12/02
[R-sig-phylo] mcmc musse asr nodelabels dropping one state
John Denton
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2013/12/02
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Nina Hobbhahn
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2013/12/02
Re: [R-sig-phylo] Extracting all interaction estimates from compar.gee output
Ben Bolker
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2013/12/02
[R-sig-phylo] Extracting all interaction estimates from compar.gee output
Nina Hobbhahn
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2013/11/29
[R-sig-phylo] best fit vs normality of residuals
Agus Camacho
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2013/11/29
[R-sig-phylo] Create infrageneric subtaxa to use pGEE for dioecious species?
Megan Welsford
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2013/11/28
Re: [R-sig-phylo] Transforming data for OU model
Theodore Garland Jr
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2013/11/28
Re: [R-sig-phylo] Transforming data for OU model
Theodore Garland Jr
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2013/11/28
Re: [R-sig-phylo] Transforming data for OU model
Joe Felsenstein
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2013/11/28
Re: [R-sig-phylo] Transforming data for OU model
Liam J. Revell
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2013/11/28
Re: [R-sig-phylo] Transforming data for OU model
Theodore Garland Jr
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2013/11/28
[R-sig-phylo] Transforming data for OU model
Anna Rice
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2013/11/27
Re: [R-sig-phylo] combined CI across trees
Liam J. Revell
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2013/11/27
[R-sig-phylo] combined CI across trees
Heath Blackmon
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2013/11/27
[R-sig-phylo] Rate cladogenesis test p values
andreia . miraldo
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2013/11/26
Re: [R-sig-phylo] Controlling margins and names in phenogram
Agus Camacho
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2013/11/26
[R-sig-phylo] Controlling margins and names in phenogram
Agus Camacho
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2013/11/25
[R-sig-phylo] Fwd: which.node function
Santiago Sánchez
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2013/11/25
Re: [R-sig-phylo] which.node function
Liam J. Revell
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2013/11/25
[R-sig-phylo] which.node function
Santiago Sánchez
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2013/11/22
[R-sig-phylo] trouble with quasse function
Oscar Inostroza
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2013/11/21
Re: [R-sig-phylo] fitContinuous code and output in Geiger
Slater, Graham
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2013/11/21
[R-sig-phylo] fitContinuous code and output in Geiger
Louise Comas
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2013/11/20
Re: [R-sig-phylo] Rate heterogeneity test with geiger
Slater, Graham
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2013/11/20
[R-sig-phylo] Rate heterogeneity test with geiger
Mercedes Burns
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2013/11/19
[R-sig-phylo] Create infrageneric subtaxa to use pGEE for dioecious species?
Megan Welsford
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2013/11/18
Re: [R-sig-phylo] compar.ou
sandra goutte
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2013/11/17
Re: [R-sig-phylo] Missing states in ancestral reconstruction using constrained Mk2 model
Rich FitzJohn
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2013/11/15
Re: [R-sig-phylo] About function .getSEs
Emmanuel Paradis
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2013/11/15
[R-sig-phylo] About function .getSEs
Tane Kim
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2013/11/13
[R-sig-phylo] Ancestral State Reconstruction in ouch
Samantha DelSerra
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2013/11/12
Re: [R-sig-phylo] compar.ou
Brian O'Meara
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2013/11/12
Re: [R-sig-phylo] match two tree edges
Jingchun Li
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2013/11/12
[R-sig-phylo] Accommodating multiple data points per species in pGEE
Megan Welsford
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2013/11/12
Re: [R-sig-phylo] compar.ou
sandra goutte
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2013/11/11
Re: [R-sig-phylo] match two tree edges
Emmanuel Paradis
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2013/11/11
Re: [R-sig-phylo] PGLS from taxonomy and computational time
Lam Ho
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2013/11/11
Re: [R-sig-phylo] match two tree edges
Liam J. Revell
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2013/11/11
Re: [R-sig-phylo] match two tree edges
Jingchun Li