Messages by Date
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Liam J. Revell
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Yan Wong
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2016/12/27
Re: [R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Emmanuel Paradis
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2016/12/27
[R-sig-phylo] Force read.nexus() to return a multiPhylo object, even if there is only one tree
Yan Wong
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2016/12/21
Re: [R-sig-phylo] ape chronos error
Emmanuel Paradis
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2016/12/19
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
dga...@huskers.unl.edu
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Anuj Guruvacharya
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Cecile Ane
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2016/12/18
Re: [R-sig-phylo] simulating gene trees on a given species tree and theta
Liam J. Revell
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2016/12/18
[R-sig-phylo] simulating gene trees on a given species tree and theta
john d
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2016/12/16
Re: [R-sig-phylo] Comparing support values on different trees
Emmanuel Paradis
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2016/12/16
Re: [R-sig-phylo] ape chronos error
Emmanuel Paradis
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2016/12/16
Re: [R-sig-phylo] Comparing support values on different trees
Frank T Burbrink
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2016/12/16
Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Chen, Ting-Wen
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2016/12/15
Re: [R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Jarrod Hadfield
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2016/12/15
Re: [R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Chris Mull
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2016/12/15
Re: [R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Chris Mull
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2016/12/15
Re: [R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Jarrod Hadfield
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2016/12/15
Re: [R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Jarrod Hadfield
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2016/12/15
[R-sig-phylo] Threshold models using threshBayes vs MCMCglmmRAM
Chris Mull
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2016/12/15
Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Carmelo Fruciano
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2016/12/15
[R-sig-phylo] ape chronos error
Riana Rishad Minocher
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2016/12/15
Re: [R-sig-phylo] Midpoint root a tree with root() function ape ver 4.0
Todd Knutson
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2016/12/15
Re: [R-sig-phylo] Midpoint root a tree with root() function ape ver 4.0
Klaus Schliep
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2016/12/15
[R-sig-phylo] Midpoint root a tree with root() function ape ver 4.0
Todd Knutson
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2016/12/15
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Emmanuel Paradis
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Klaus Schliep
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Yan Wong
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Yan Wong
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2016/12/14
Re: [R-sig-phylo] Comparing support values on different trees
Emmanuel Paradis
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Emmanuel Paradis
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Emmanuel Paradis
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2016/12/14
Re: [R-sig-phylo] Comparing support values on different trees
Jacob Berv
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2016/12/14
Re: [R-sig-phylo] Comparing support values on different trees
Keith Barker
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2016/12/14
[R-sig-phylo] Comparing support values on different trees
Frank T Burbrink
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Yan Wong
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2016/12/14
Re: [R-sig-phylo] compressTipLabel as an option to read.trees()
Joseph W. Brown
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2016/12/14
[R-sig-phylo] compressTipLabel as an option to read.trees()
Yan Wong
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2016/12/13
Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Chen, Ting-Wen
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2016/12/13
Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Fábio Machado
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2016/12/11
Re: [R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Theodore Garland
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2016/12/11
[R-sig-phylo] bonferroni corrections in Blomberg's K and Pagel's lambda
Chen, Ting-Wen
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2016/12/09
Re: [R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
Francois KECK
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2016/12/08
Re: [R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
Theodore Garland
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2016/12/08
Re: [R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
David Bapst
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2016/12/08
Re: [R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
Carlos H. Biagolini Junior
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2016/12/08
Re: [R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
Brian O'Meara
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2016/12/08
[R-sig-phylo] A question about phylogenetic signal significance with 1000 trees
Carturan, Bruno
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2016/12/06
Re: [R-sig-phylo] Estimating discrete ancestral states with ARD model in ace
Katharine Walter
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2016/12/05
Re: [R-sig-phylo] Estimating discrete ancestral states with ARD model in ace
Liam J. Revell
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2016/12/05
[R-sig-phylo] Estimating discrete ancestral states with ARD model in ace
Katharine Walter
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2016/12/01
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Liam J. Revell
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2016/12/01
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Enrico.Rezende
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2016/12/01
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Theodore Garland
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2016/12/01
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Menzel, Dr. Florian
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2016/12/01
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Menzel, Dr. Florian
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2016/11/30
Re: [R-sig-phylo] get branch lengths from distances to root
Juan Antonio Balbuena
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2016/11/30
Re: [R-sig-phylo] phylogenetic signal different from BM and random
Theodore Garland
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2016/11/30
[R-sig-phylo] phylogenetic signal different from BM and random
Menzel, Dr. Florian
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2016/11/30
Re: [R-sig-phylo] get branch lengths from distances to root
Cecile Ane
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2016/11/30
[R-sig-phylo] get branch lengths from distances to root
Juan Antonio Balbuena
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2016/11/30
Re: [R-sig-phylo] get branch lengths from distances to root
Liam J. Revell
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2016/11/29
[R-sig-phylo] caretaker / user for the rphylo.org domain?
Hilmar Lapp
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2016/11/29
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 106, Issue 15
Chris Buddenhagen
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2016/11/29
[R-sig-phylo] published plant or other disease/pest phylogeny/alignment with geo referenced data
Chris Buddenhagen
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2016/11/28
[R-sig-phylo] maximum agreement subtrees?
John Denton
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2016/11/24
Re: [R-sig-phylo] distances between trees
Emmanuel Paradis
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2016/11/22
Re: [R-sig-phylo] error when using function read.GenBank in ape
Vojtěch Zeisek
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2016/11/21
Re: [R-sig-phylo] error when using function read.GenBank in ape
Emmanuel Paradis
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2016/11/21
Re: [R-sig-phylo] error when using function read.GenBank in ape
Vojtěch Zeisek
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2016/11/21
Re: [R-sig-phylo] error when using function read.GenBank in ape
Emmanuel Paradis
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2016/11/20
[R-sig-phylo] distances between trees
Karla Shikev
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2016/11/20
Re: [R-sig-phylo] concatenating loci with different taxa
Karla Shikev
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2016/11/19
Re: [R-sig-phylo] error when using function read.GenBank in ape
Vojtěch Zeisek
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2016/11/18
Re: [R-sig-phylo] concatenating loci with different taxa
Klaus Schliep
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2016/11/18
Re: [R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips
Liam J. Revell
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2016/11/18
Re: [R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips
Gabriel Yedid
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2016/11/18
Re: [R-sig-phylo] concatenating loci with different taxa
Emmanuel Paradis
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2016/11/18
[R-sig-phylo] concatenating loci with different taxa
Karla Shikev
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2016/11/17
[R-sig-phylo] PhD positions in Evolutionay Biology with a focus on phylogenetic comparative methods
krzysztofbartoszek
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2016/11/15
[R-sig-phylo] The use of Pagels Lamda
Camilla Lorange Lindberg
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2016/11/12
Re: [R-sig-phylo] Bug in bitsplits?
Leonid Chindelevitch
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2016/11/12
[R-sig-phylo] Bug in bitsplits?
Leonid Chindelevitch
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2016/11/12
Re: [R-sig-phylo] error when using function read.GenBank in ape
Eduardo Ascarrunz
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2016/11/11
Re: [R-sig-phylo] error when using function read.GenBank in ape
Emmanuel Paradis
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2016/11/11
Re: [R-sig-phylo] error when using function read.GenBank in ape
Eduardo Ascarrunz
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2016/11/10
[R-sig-phylo] error when using function read.GenBank in ape
Chen, Ting-Wen
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2016/11/10
[R-sig-phylo] pre-release of ape 4.0
Emmanuel Paradis
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2016/11/07
[R-sig-phylo] Deltran parsimony in R
Martin Hughes
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2016/11/07
[R-sig-phylo] How to combine MCMC results from BiSSE analyses based on multiple trees?
Lei Yang
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2016/11/03
Re: [R-sig-phylo] simulate tree by specifying taxa distance
Yu, Guangchuang
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2016/11/03
Re: [R-sig-phylo] simulate tree by specifying taxa distance
Giulio V. Dalla Riva
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2016/11/03
[R-sig-phylo] phylogenetic signal test for discrete trait
Chen, Ting-Wen
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2016/11/03
[R-sig-phylo] simulate tree by specifying taxa distance
Yu, Guangchuang
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2016/11/03
[R-sig-phylo] 99 Ways to ruin an open source project
Joseph W. Brown
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2016/11/02
Re: [R-sig-phylo] Newick tree merging at the wrong level?
Liam J. Revell
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2016/11/02
Re: [R-sig-phylo] Newick tree merging at the wrong level?
Carlos Porto Filho
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2016/11/02
Re: [R-sig-phylo] Newick tree merging at the wrong level?
Liam J. Revell
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2016/11/01
Re: [R-sig-phylo] Newick tree merging at the wrong level?
Liam J. Revell
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2016/11/01
[R-sig-phylo] Newick tree merging at the wrong level?
Carlos Porto Filho
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2016/11/01
Re: [R-sig-phylo] Making ultrametric trees
Shinichi Nakagawa
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2016/11/01
Re: [R-sig-phylo] Counting independent evolutionary origin of trait evolution
Gopal Murali
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2016/10/31
Re: [R-sig-phylo] Making ultrametric trees
Klaus Schliep
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2016/10/31
Re: [R-sig-phylo] Making ultrametric trees
Giulio V. Dalla Riva
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2016/10/31
Re: [R-sig-phylo] Making ultrametric trees
Alejandro Gonzalez Voyer
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2016/10/31
Re: [R-sig-phylo] Making ultrametric trees
Emmanuel Paradis
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2016/10/31
Re: [R-sig-phylo] Counting independent evolutionary origin of trait evolution
Liam J. Revell
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2016/10/31
[R-sig-phylo] Counting independent evolutionary origin of trait evolution
Gopal Murali
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2016/10/30
Re: [R-sig-phylo] Making ultrametric trees
Shinichi Nakagawa
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2016/10/30
[R-sig-phylo] Conversion between phylo and hclust objects?
Alexandre F. Souza
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2016/10/30
Re: [R-sig-phylo] Making ultrametric trees
Brian O'Meara
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2016/10/29
Re: [R-sig-phylo] Making ultrametric trees
Shinichi Nakagawa
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2016/10/29
Re: [R-sig-phylo] Making ultrametric trees
Alejandro Gonzlaez Voyer
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2016/10/29
Re: [R-sig-phylo] Making ultrametric trees
Emmanuel Paradis
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2016/10/29
Re: [R-sig-phylo] Making ultrametric trees
Shinichi Nakagawa
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2016/10/29
[R-sig-phylo] TreeBase
Sami Hussein Rabei
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2016/10/29
Re: [R-sig-phylo] Making ultrametric trees
Emmanuel Paradis
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2016/10/29
Re: [R-sig-phylo] fatal error plotting trees
Emmanuel Paradis
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2016/10/28
[R-sig-phylo] Making ultrametric trees
Shinichi Nakagawa
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2016/10/28
Re: [R-sig-phylo] fatal error plotting trees
Manabu Sakamoto
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2016/10/28
Re: [R-sig-phylo] fatal error plotting trees
David Bapst
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2016/10/28
[R-sig-phylo] fatal error plotting trees
Manabu Sakamoto
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2016/10/27
[R-sig-phylo] New User
Sami Hussein Rabei
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2016/10/27
Re: [R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips
Liam J. Revell
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2016/10/27
[R-sig-phylo] Adding a custom legend underneath a phylo plot with coloured tips
Gabriel Yedid
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2016/10/27
[R-sig-phylo] رد: Truncate x-axis in phydataplot barplots
Sami Hussein Rabei
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2016/10/27
Re: [R-sig-phylo] Draw multiple ASR pies on nodes
Liam J. Revell
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2016/10/27
[R-sig-phylo] Course Phylogenetic Analysis using R, March 6-10, Barcelona (Spain).
Soledad De Esteban-Trivigno
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2016/10/27
[R-sig-phylo] Draw multiple ASR pies on nodes
Charles Pouchon
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2016/10/26
[R-sig-phylo] Maximize Mean Pairwise Distance (Leonardo R? Jorge)
Sh Esmaielbegi
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2016/10/25
[R-sig-phylo] Maximize Mean Pairwise Distance
Leonardo Ré Jorge
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2016/10/17
Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots
Liam J. Revell
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2016/10/17
Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots
Emmanuel Paradis
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2016/10/17
Re: [R-sig-phylo] Truncate x-axis in phydataplot barplots
Liam Revell
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2016/10/17
[R-sig-phylo] Truncate x-axis in phydataplot barplots
Marian Schubert
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2016/10/06
Re: [R-sig-phylo] Supertree with Stratigraphic Constraints
David Bapst
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2016/10/06
Re: [R-sig-phylo] Supertree with Stratigraphic Constraints
William Gearty
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2016/10/05
Re: [R-sig-phylo] Supertree with Stratigraphic Constraints
David Bapst
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2016/10/05
Re: [R-sig-phylo] Supertree with Stratigraphic Constraints
William Gearty
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2016/10/05
[R-sig-phylo] predicting computational needs of a MuSSE analysis?
Elizabeth Miller
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2016/10/04
Re: [R-sig-phylo] ape functions to become generic
David Bapst
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2016/10/04
[R-sig-phylo] 'FINAL CALL - Phylogentic data analysis using R'
Oliver Hooker
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2016/10/04
Re: [R-sig-phylo] ape functions to become generic
Emmanuel Paradis
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2016/10/03
Re: [R-sig-phylo] ape functions to become generic
David Bapst
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2016/10/03
[R-sig-phylo] ape functions to become generic
Emmanuel Paradis
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2016/09/29
[R-sig-phylo] accounting for unknown tip states in ancestral rescontructions using phytools and bayestraits
Jesse Delia
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2016/09/29
[R-sig-phylo] Error in dis[sppInSample, sppInSample] : subscript out of bounds
Jhonny Capichoni Massante
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2016/09/26
Re: [R-sig-phylo] evolve discrete characters on non-ultrametric tree?
Liam J. Revell
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2016/09/26
[R-sig-phylo] evolve discrete characters on non-ultrametric tree?
John Denton
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2016/09/26
Re: [R-sig-phylo] phylogenetic signal-Blomberg's K
Liam J. Revell
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2016/09/26
[R-sig-phylo] phylogenetic signal-Blomberg's K
Menzel, Dr. Florian
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2016/09/25
Re: [R-sig-phylo] How to contribute?
Richel Bilderbeek
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2016/09/22
[R-sig-phylo] Phylogenetic signal
Sergio Ferreira Cardoso
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2016/09/18
Re: [R-sig-phylo] Use of a Phylocom tree for PGLS
Oscar Valverde
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2016/09/18
Re: [R-sig-phylo] Use of a Phylocom tree for PGLS
Brian O'Meara
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2016/09/17
Re: [R-sig-phylo] Use of a Phylocom tree for PGLS
Jacob Berv
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2016/09/17
Re: [R-sig-phylo] simmap correlation statistics in R?
Liam J. Revell
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2016/09/17
Re: [R-sig-phylo] Use of a Phylocom tree for PGLS
Liam J. Revell
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2016/09/17
Re: [R-sig-phylo] Use of a Phylocom tree for PGLS
Liam J. Revell
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2016/09/17
[R-sig-phylo] Use of a Phylocom tree for PGLS
Oscar Valverde
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2016/09/17
[R-sig-phylo] simmap correlation statistics in R?
Maria Ghazali
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2016/09/17
Re: [R-sig-phylo] mulRF distance
Liam J. Revell
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2016/09/17
[R-sig-phylo] mulRF distance
Ondřej Mikula
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2016/09/16
Re: [R-sig-phylo] Standard errors of theta estimates in OU models
Xiaojing Wei
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2016/09/15
Re: [R-sig-phylo] Standard errors of theta estimates in OU models
Cecile Ane
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2016/09/15
Re: [R-sig-phylo] Standard errors of theta estimates in OU models
Brian O'Meara
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2016/09/15
[R-sig-phylo] Standard errors of theta estimates in OU models
Xiaojing Wei
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2016/09/15
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/15
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/15
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
Liam J. Revell
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2016/09/14
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
Florian Boucher
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2016/09/14
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/14
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
Florian Boucher
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2016/09/14
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/12
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
Liam J. Revell
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2016/09/12
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/12
Re: [R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
Hilmar Lapp
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2016/09/12
[R-sig-phylo] Collapse a clade by tip labels while maintaining phylogenetic position
branchlizard .
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2016/09/12
Re: [R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations
Juan Antonio Balbuena
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2016/09/12
Re: [R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations
Liam J. Revell
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2016/09/12
[R-sig-phylo] plot.cophylo: how to change the colour of host-parasite associations
Juan Antonio Balbuena
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2016/09/12
[R-sig-phylo] Course Phylogenetic Analysis using R, March 6-10, Barcelona (Spain).
Soledad De Esteban-Trivigno
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Liam Revell
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Klaus Schliep
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Martin Dohrmann
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Thibaut Jombart
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Liam J. Revell
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2016/09/12
Re: [R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Joseph W. Brown
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2016/09/12
[R-sig-phylo] Anyone knows how to concatenate aligned genes sequences so as to create whole genome alignments?
Bhuller, Ravneet
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2016/09/11
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Liam J. Revell
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2016/09/10
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Lei Yang
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2016/09/10
Re: [R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Liam J. Revell
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2016/09/10
[R-sig-phylo] fitDiscrete question - super large likelihood and AIC values
Lei Yang
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2016/09/09
Re: [R-sig-phylo] ape - nj, mvr questions
Emmanuel Paradis
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2016/09/07
Re: [R-sig-phylo] Missing States in ML Reconstruction of Discrete Ancestral States (phytools, ape)
Eduardo Ascarrunz
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2016/09/06
[R-sig-phylo] ape - nj, mvr questions
Shai Tal
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2016/09/05
Re: [R-sig-phylo] suset DNAbin
Emmanuel Paradis