This problem with Jmol appears to be multifaceted.
1) The path to Jmol looks strange, although the error messages do
appear to come from Jmol.
2) It looks like something is being added to the top of the script
file for Jmol and confusing it.
3) Could also related to the JavaVM you are using.  Jmol is only
tested against the Sun/Oracle VM.

*We are working on patches to Jmol in the present notebook.  There are
still some asychronicity issues that I think I've almost got a handle
on.  Let's not try to move this stuff to the new notebook until that
is solved.  I hope today :)

Jonathan

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