2011/3/26 Jonathan <gu...@uwosh.edu>:
> This problem with Jmol appears to be multifaceted.
> 1) The path to Jmol looks strange, although the error messages do
> appear to come from Jmol.
> 2) It looks like something is being added to the top of the script
> file for Jmol and confusing it.
> 3) Could also related to the JavaVM you are using.  Jmol is only
> tested against the Sun/Oracle VM.

  I just tested with firefox also, to ensure it is not some chromium-browser
issue, but got the same results. With some extra tests I could see the
contents with this procedure:

cut&paste from jvm debug output in browser, for example in my test
http://flask.sagenb.org/home/_sage_/4/cells/14/sage0-size500.jmol?1301151907

then, look at the contents of sage0-size500.jmol and download
http://flask.sagenb.org//home/_sage_/4/cells/14/sage0-size500-525945175.jmol.zip

then, unzip sage0-size500-525945175.jmol.zip and run jmol -s SCRIPT

  I think it may be an authorization issue, because if using wget to fetch
the first file, it downloads the top page with form for login and password.

> *We are working on patches to Jmol in the present notebook.  There are
> still some asychronicity issues that I think I've almost got a handle
> on.  Let's not try to move this stuff to the new notebook until that
> is solved.  I hope today :)

  No problems :-) I just tested jmol because of comments, and it
usually is what people want to see first, interactive 3d graphics :-)

> Jonathan

Paulo

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