After rebuilding from scratch, reinstalling packages (this time including
gap_packages), ptestlong gives me :
- no transient failure
- the usual permanent failure on gap_packages
- and a very strange, reproducible failure
on rc/sage/graphs/strongly_regular_db.pyx.
Details on the latter :
charpent@p-202-021:/usr/local/sage-9$ sage -t --long --warn-long 53.5
src/sage/graphs/strongly_regular_db.pyx # 4 doctests failed
Running doctests with ID 2019-11-28-19-21-27-1f4d95ea.
Git branch: develop
Using
--optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,python2,sage,sagenb
Doctesting 1 file.
sage -t --long --warn-long 53.5 src/sage/graphs/strongly_regular_db.pyx
**********************************************************************
File "src/sage/graphs/strongly_regular_db.pyx", line 2242, in
sage.graphs.strongly_regular_db.SRG_280_135_70_60
Failed example:
g=SRG_280_135_70_60() # long time # optional -
gap_packages
Exception raised:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
line 769, in _eval_line
raise RuntimeError("%s produced error output\n%s\n executing
%s"%(self, error,line))
RuntimeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
line 1471, in __init__
self._name = parent._create(value, name=name)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
line 491, in _create
self.set(name, value)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
line 1427, in set
self._eval_line(cmd, allow_use_file=True)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
line 803, in _eval_line
raise RuntimeError(exc)
RuntimeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 681, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 1123, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.graphs.strongly_regular_db.SRG_280_135_70_60[1]>", line 1, in <module>
g=SRG_280_135_70_60() # long time # optional -
gap_packages
File "sage/graphs/strongly_regular_db.pyx", line 2253, in
sage.graphs.strongly_regular_db.SRG_280_135_70_60
(build/cythonized/sage/graphs/strongly_regular_db.c:34308)
J2 = PermutationGroup(gap('AtlasGenerators("J2",2).generators'))
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
line 288, in __call__
return cls(self, x, name=name)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
line 1476, in __init__
raise_(TypeError, TypeError(*x.args), sys.exc_info()[2])
File "/usr/local/sage-9/local/lib/python3.7/site-packages/six.py",
line 692, in reraise
raise value.with_traceback(tb)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
line 1471, in __init__
self._name = parent._create(value, name=name)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
line 491, in _create
self.set(name, value)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
line 1427, in set
self._eval_line(cmd, allow_use_file=True)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
line 803, in _eval_line
raise RuntimeError(exc)
TypeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
**********************************************************************
File "src/sage/graphs/strongly_regular_db.pyx", line 2243, in
sage.graphs.strongly_regular_db.SRG_280_135_70_60
Failed example:
g.is_strongly_regular(parameters=True) # long time # optional -
gap_packages
Exception raised:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 681, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 1123, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.graphs.strongly_regular_db.SRG_280_135_70_60[2]>", line 1, in <module>
g.is_strongly_regular(parameters=True) # long time # optional -
gap_packages
NameError: name 'g' is not defined
**********************************************************************
File "src/sage/graphs/strongly_regular_db.pyx", line 2349, in
sage.graphs.strongly_regular_db.SRG_416_100_36_20
Failed example:
g = SRG_416_100_36_20() # optional - gap_packages # long
time
Exception raised:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 681, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 1123, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.graphs.strongly_regular_db.SRG_416_100_36_20[1]>", line 1, in <module>
g = SRG_416_100_36_20() # optional - gap_packages #
long time
File "sage/graphs/strongly_regular_db.pyx", line 2359, in
sage.graphs.strongly_regular_db.SRG_416_100_36_20
(build/cythonized/sage/graphs/strongly_regular_db.c:36484)
h.add_edges(g.Orbit([1,5],libgap.OnSets))
File "sage/libs/gap/element.pyx", line 2666, in
sage.libs.gap.element.GapElement_MethodProxy.__call__
(build/cythonized/sage/libs/gap/element.c:20291)
return GapElement_Function.__call__(self, * ([self.first_argument]
+ list(args)))
File "sage/libs/gap/element.pyx", line 2514, in
sage.libs.gap.element.GapElement_Function.__call__
(build/cythonized/sage/libs/gap/element.c:19304)
sig_on()
sage.libs.gap.util.GAPError: Error, no method found! Error, no 1st
choice method found for `GeneratorsOfMagmaWithInverses' on 1 arguments
The 1st argument is 'fail' which might point to an earlier problem
**********************************************************************
File "src/sage/graphs/strongly_regular_db.pyx", line 2350, in
sage.graphs.strongly_regular_db.SRG_416_100_36_20
Failed example:
g.is_strongly_regular(parameters=True) # optional - gap_packages # long
time
Exception raised:
Traceback (most recent call last):
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 681, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
line 1123, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.graphs.strongly_regular_db.SRG_416_100_36_20[2]>", line 1, in <module>
g.is_strongly_regular(parameters=True) # optional - gap_packages #
long time
NameError: name 'g' is not defined
**********************************************************************
2 items had failures:
2 of 4 in sage.graphs.strongly_regular_db.SRG_280_135_70_60
2 of 4 in sage.graphs.strongly_regular_db.SRG_416_100_36_20
[334 tests, 4 failures, 812.98 s]
----------------------------------------------------------------------
sage -t --long --warn-long 53.5 src/sage/graphs/strongly_regular_db.pyx #
4 doctests failed
----------------------------------------------------------------------
Total time for all tests: 813.1 seconds
cpu time: 27.9 seconds
cumulative wall time: 813.0 seconds
The discrepancy between CPU time and elapsed time is puzzling. It s not an
artifact : a system monitor confirmed that CPU activity was minimal during
most of this test.
I have been unable to reproduce the problem on my other machine, running
the same rebuilt 9.0.beta7, where this tests passes without any failure.
Cherry on the cake: I have been unable to run ptestalllong on this machine
: this (reproducibly !) dies with a "too many open files" error (not
captured in the log) about halfway, after a (failed) attempt to run sage -t
--long src/sage/groups/perm_gps/permgroup_named.py, which passes normally
on the other machine.
Last lines of the log:
Killing test src/sage/groups/perm_gps/permgroup_named.py
Killing test src/sage/combinat/designs/twographs.py
Killing test src/sage/databases/findstat.py
----------------------------------------------------------------------
sage -t --long src/sage/graphs/strongly_regular_db.pyx # 5 doctests failed
sage -t --long src/sage/graphs/generators/smallgraphs.py # 6 doctests
failed
sage -t --long src/sage/plot/animate.py # 7 doctests failed
sage -t --long src/sage/combinat/posets/posets.py # 1 doctest failed
sage -t --long src/sage/combinat/matrices/hadamard_matrix.py # 2 doctests
failed
sage -t --long src/sage/misc/latex.py # 1 doctest failed
sage -t --long src/sage/combinat/designs/ext_rep.py # 2 doctests failed
sage -t --long src/sage/coding/databases.py # 2 doctests failed
sage -t --long src/sage/misc/persist.pyx # 2 doctests failed
sage -t --long src/sage/repl/load.py # 1 doctest failed
Doctests interrupted: 1444/3793 files tested
----------------------------------------------------------------------
Any hint ?
Le mercredi 27 novembre 2019 14:56:36 UTC+1, Emmanuel Charpentier a écrit :
>
> Doubleplusungood...
>
> On Deboan testing running on core i5 + 8 GB RAM, ptestalllong gets me
> (part of) the usual suspects (transient failures, plus 6 (six) permanent
> failures due to abort:
>
> | File | Result
> | P/T |
>
> |----------------------------------------------------------+---------------------+-----|
> | src/sage/crypto/mq/sr.py | Killed due to
> abort | P |
> | src/sage/rings/polynomial/multi_polynomial_sequence.py | Killed due to
> abort | P |
> | src/sage/combinat/posets/posets.py | 1 doctest
> failed | T |
> | src/sage/plot/animate.py | 7 doctests
> failed | T |
> | src/sage/combinat/matrices/hadamard_matrix.py | 2 doctests
> failed | T |
> | src/sage/rings/polynomial/pbori.pyx | Killed due to
> abort | P |
> | src/sage/misc/latex.py | 1 doctest
> failed | T |
> | src/sage/coding/databases.py | 2 doctests
> failed | T |
> | src/sage/misc/persist.pyx | 2 doctests
> failed | T |
> | src/sage/repl/load.py | 1 doctest
> failed | T |
> | src/sage/graphs/graph_latex.py | 2 doctests
> failed | T |
> | src/sage/rings/polynomial/polynomial_ring_constructor.py | Killed due to
> abort | P |
> | src/sage/sat/solvers/dimacs.py | Killed due to
> abort | P |
> | src/doc/en/reference/sat/index.rst | Killed due to
> abort | P |
> | src/sage/sat/boolean_polynomials.py | Killed due to
> abort | P |
> | src/sage/misc/remote_file.py | 2 doctests
> failed | T |
> | src/sage/databases/findstat.py | 7 doctests
> failed | T |
> | src/sage/interfaces/magma_free.py | 2 doctests
> failed | T |
>
> Details : see the enclose checkerrs.txt
>
> HTH,
>
> Le mercredi 27 novembre 2019 01:28:33 UTC+1, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git
>> branch. Alternatively, the self-contained source tarball is at
>> http://www.sagemath.org/download-latest.html
>>
>>
>> d48a21c149 (tag: 9.0.beta7, trac/develop) Updated SageMath version to
>> 9.0.beta7
>> 22426a509b Trac #28797: 32-bit Python 3 failures in combinat
>> 54072f6c3b Trac #28795: Python 3 overflow in IntegerModRing pow
>> 7f2572fcdf Trac #28685: Upgrade from beautifulsoup to beautifulsoup4
>> c597ceea70 Trac #28737: remove deprecated stuff in old coercion model
>> a5c1185e7c Trac #28736: fix Texture for negative inputs
>> 6c66325a63 Trac #28698: py3: HTML documentation for GlobalOptions does
>> not show up correctly
>> aa0ac42b16 Trac #28675: Deprecate GraphicsArray import from
>> sage.plot.graphics
>> 5882b7f376 Trac #28564: Tensor Fields and Sections: Naming Consistencies
>> 8f9b67d25c Trac #28304: add type information to _repr_ of Macaulay2
>> elements
>> e6e616380a Trac #28214: Compute and display graph of nth-preimage tree
>> a5bb40f91c Trac #27838: 5 internet doctests failing in findstat.py
>> 6553536757 Trac #27790: compatibility with cplex 12.9
>> 3c6a9108c1 Trac #23816: implement left action of matrices on scheme points
>> 9c6f3dab7f Trac #28732: update sagetex to version 3.4
>> f856552b81 Trac #28748: Python 3 debug build fails to start
>> 232ae1bddc (tag: 9.0.beta6) Updated SageMath version to 9.0.beta6
>>
>>
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