Dear Dima,
You may have hit the nerve (see below):
Le vendredi 29 novembre 2019 00:52:43 UTC+1, Dima Pasechnik a écrit :
>
> On Thu, Nov 28, 2019 at 7:45 PM Dima Pasechnik <dim...@gmail.com
> <javascript:>> wrote:
> >
> > what does happen if you run
> >
> > sage: from sage.graphs.strongly_regular_db import SRG_280_135_70_60
> > sage: SRG_280_135_70_60()
> >
> > Does it print
> >
> > J_2 on cosets of 3.PGL(2,9): Graph on 280 vertices
>
- On my core7/16 GB machine: yes (in about 1 second).
- On my problematic machine (core i5, 8 GB): nope (and it takes an awful
time (>5min) to fail...):
sage: from sage.graphs.strongly_regular_db import SRG_280_135_70_60
sage: SRG_280_135_70_60()
---------------------------------------------------------------------------
RuntimeError Traceback (most recent call last)
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py
in _eval_line(self, line, allow_use_file, wait_for_prompt,
restart_if_needed)
768 error = error.replace('\r','')
--> 769 raise RuntimeError("%s produced error output\n%s\n
executing %s"%(self, error,line))
770 if not len(normal):
RuntimeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
During handling of the above exception, another exception occurred:
RuntimeError Traceback (most recent call last)
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py
in __init__(self, parent, value, is_name, name)
1470 try:
-> 1471 self._name = parent._create(value, name=name)
1472 # Convert ValueError and RuntimeError to TypeError for
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py
in _create(self, value, name)
490 name = self._next_var_name() if name is None else name
--> 491 self.set(name, value)
492 return name
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py
in set(self, var, value)
1426 cmd = ('%s:=%s;;' % (var, value)).replace('\n','')
-> 1427 self._eval_line(cmd, allow_use_file=True)
1428
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py
in _eval_line(self, line, allow_use_file, wait_for_prompt,
restart_if_needed)
802 else:
--> 803 raise RuntimeError(exc)
804
RuntimeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
During handling of the above exception, another exception occurred:
TypeError Traceback (most recent call last)
<ipython-input-2-6f6fc5a36ce9> in <module>()
----> 1 SRG_280_135_70_60()
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/graphs/strongly_regular_db.pyx
in sage.graphs.strongly_regular_db.SRG_280_135_70_60
(build/cythonized/sage/graphs/strongly_regular_db.c:34308)()
2251
2252 # A representation of J2 acting on a 3.PGL(2,9) it contains.
-> 2253 J2 =
PermutationGroup(gap('AtlasGenerators("J2",2).generators'))
2254 edges = J2.orbit((1,2),"OnSets")
2255 g = Graph()
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py
in __call__(self, x, name)
286
287 if isinstance(x, string_types):
--> 288 return cls(self, x, name=name)
289 try:
290 # Special methods do not and should not have an option
to
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py
in __init__(self, parent, value, is_name, name)
1474 except (RuntimeError, ValueError) as x:
1475 self._session_number = -1
-> 1476 raise_(TypeError, TypeError(*x.args),
sys.exc_info()[2])
1477 except BaseException:
1478 self._session_number = -1
/usr/local/sage-9/local/lib/python3.7/site-packages/six.py in reraise(tp,
value, tb)
690 value = tp()
691 if value.__traceback__ is not tb:
--> 692 raise value.with_traceback(tb)
693 raise value
694 finally:
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py
in __init__(self, parent, value, is_name, name)
1469 else:
1470 try:
-> 1471 self._name = parent._create(value, name=name)
1472 # Convert ValueError and RuntimeError to TypeError for
1473 # coercion to work properly.
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py
in _create(self, value, name)
489 def _create(self, value, name=None):
490 name = self._next_var_name() if name is None else name
--> 491 self.set(name, value)
492 return name
493
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py
in set(self, var, value)
1425 """
1426 cmd = ('%s:=%s;;' % (var, value)).replace('\n','')
-> 1427 self._eval_line(cmd, allow_use_file=True)
1428
1429 def get(self, var, use_file=False):
/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py
in _eval_line(self, line, allow_use_file, wait_for_prompt,
restart_if_needed)
801 return ''
802 else:
--> 803 raise RuntimeError(exc)
804
805 except KeyboardInterrupt:
TypeError: Gap produced error output
Error, Record Element: <rec> must be a record (not a boolean or fail)
executing \$sage1:=AtlasGenerators("J2",2).generators;;
>
> here is a ticket that improves this function by switching from GAP to
> libGAP interface,
> please review
> https://trac.sagemath.org/ticket/28818
>
> Perhaps that was the general flakiness of pexpect that caused that
> failure.
>
> Dima
> >
> > ?
> >
> >
> > On Thu, 28 Nov 2019, 19:06 Emmanuel Charpentier, <emanuel.c...@gmail.com
> <javascript:>> wrote:
> >>
> >> After rebuilding from scratch, reinstalling packages (this time
> including gap_packages), ptestlong gives me :
> >>
> >> no transient failure
> >> the usual permanent failure on gap_packages
> >> and a very strange, reproducible failure on
> rc/sage/graphs/strongly_regular_db.pyx.
> >>
> >>
> >> Details on the latter :
> >>
> >> charpent@p-202-021:/usr/local/sage-9$ sage -t --long --warn-long 53.5
> src/sage/graphs/strongly_regular_db.pyx # 4 doctests failed
> >> Running doctests with ID 2019-11-28-19-21-27-1f4d95ea.
> >> Git branch: develop
> >> Using
> --optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,python2,sage,sagenb
>
>
> >> Doctesting 1 file.
> >> sage -t --long --warn-long 53.5 src/sage/graphs/strongly_regular_db.pyx
> >> **********************************************************************
> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2242, in
> sage.graphs.strongly_regular_db.SRG_280_135_70_60
> >> Failed example:
> >> g=SRG_280_135_70_60() # long time # optional -
> gap_packages
> >> Exception raised:
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
> line 769, in _eval_line
> >> raise RuntimeError("%s produced error output\n%s\n executing
> %s"%(self, error,line))
> >> RuntimeError: Gap produced error output
> >> Error, Record Element: <rec> must be a record (not a boolean or
> fail)
> >>
> >> executing \$sage1:=AtlasGenerators("J2",2).generators;;
> >>
> >> During handling of the above exception, another exception occurred:
> >>
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
>
> line 1471, in __init__
> >> self._name = parent._create(value, name=name)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
>
> line 491, in _create
> >> self.set(name, value)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
> line 1427, in set
> >> self._eval_line(cmd, allow_use_file=True)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
> line 803, in _eval_line
> >> raise RuntimeError(exc)
> >> RuntimeError: Gap produced error output
> >> Error, Record Element: <rec> must be a record (not a boolean or
> fail)
> >>
> >> executing \$sage1:=AtlasGenerators("J2",2).generators;;
> >>
> >> During handling of the above exception, another exception occurred:
> >>
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 681, in _run
> >> self.compile_and_execute(example, compiler, test.globs)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 1123, in compile_and_execute
> >> exec(compiled, globs)
> >> File "<doctest
> sage.graphs.strongly_regular_db.SRG_280_135_70_60[1]>", line 1, in <module>
> >> g=SRG_280_135_70_60() # long time # optional -
> gap_packages
> >> File "sage/graphs/strongly_regular_db.pyx", line 2253, in
> sage.graphs.strongly_regular_db.SRG_280_135_70_60
> (build/cythonized/sage/graphs/strongly_regular_db.c:34308)
> >> J2 =
> PermutationGroup(gap('AtlasGenerators("J2",2).generators'))
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
>
> line 288, in __call__
> >> return cls(self, x, name=name)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
>
> line 1476, in __init__
> >> raise_(TypeError, TypeError(*x.args), sys.exc_info()[2])
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/six.py", line 692, in
> reraise
> >> raise value.with_traceback(tb)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py",
>
> line 1471, in __init__
> >> self._name = parent._create(value, name=name)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py",
>
> line 491, in _create
> >> self.set(name, value)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
> line 1427, in set
> >> self._eval_line(cmd, allow_use_file=True)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py",
> line 803, in _eval_line
> >> raise RuntimeError(exc)
> >> TypeError: Gap produced error output
> >> Error, Record Element: <rec> must be a record (not a boolean or
> fail)
> >>
> >> executing \$sage1:=AtlasGenerators("J2",2).generators;;
> >> **********************************************************************
> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2243, in
> sage.graphs.strongly_regular_db.SRG_280_135_70_60
> >> Failed example:
> >> g.is_strongly_regular(parameters=True) # long time # optional -
> gap_packages
> >> Exception raised:
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 681, in _run
> >> self.compile_and_execute(example, compiler, test.globs)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 1123, in compile_and_execute
> >> exec(compiled, globs)
> >> File "<doctest
> sage.graphs.strongly_regular_db.SRG_280_135_70_60[2]>", line 1, in <module>
> >> g.is_strongly_regular(parameters=True) # long time # optional -
> gap_packages
> >> NameError: name 'g' is not defined
> >> **********************************************************************
> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2349, in
> sage.graphs.strongly_regular_db.SRG_416_100_36_20
> >> Failed example:
> >> g = SRG_416_100_36_20() # optional - gap_packages #
> long time
> >> Exception raised:
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 681, in _run
> >> self.compile_and_execute(example, compiler, test.globs)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 1123, in compile_and_execute
> >> exec(compiled, globs)
> >> File "<doctest
> sage.graphs.strongly_regular_db.SRG_416_100_36_20[1]>", line 1, in <module>
> >> g = SRG_416_100_36_20() # optional -
> gap_packages # long time
> >> File "sage/graphs/strongly_regular_db.pyx", line 2359, in
> sage.graphs.strongly_regular_db.SRG_416_100_36_20
> (build/cythonized/sage/graphs/strongly_regular_db.c:36484)
> >> h.add_edges(g.Orbit([1,5],libgap.OnSets))
> >> File "sage/libs/gap/element.pyx", line 2666, in
> sage.libs.gap.element.GapElement_MethodProxy.__call__
> (build/cythonized/sage/libs/gap/element.c:20291)
> >> return GapElement_Function.__call__(self, *
> ([self.first_argument] + list(args)))
> >> File "sage/libs/gap/element.pyx", line 2514, in
> sage.libs.gap.element.GapElement_Function.__call__
> (build/cythonized/sage/libs/gap/element.c:19304)
> >> sig_on()
> >> sage.libs.gap.util.GAPError: Error, no method found! Error, no 1st
> choice method found for `GeneratorsOfMagmaWithInverses' on 1 arguments
> >> The 1st argument is 'fail' which might point to an earlier problem
> >> **********************************************************************
> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2350, in
> sage.graphs.strongly_regular_db.SRG_416_100_36_20
> >> Failed example:
> >> g.is_strongly_regular(parameters=True) # optional - gap_packages #
> long time
> >> Exception raised:
> >> Traceback (most recent call last):
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 681, in _run
> >> self.compile_and_execute(example, compiler, test.globs)
> >> File
> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py",
> line 1123, in compile_and_execute
> >> exec(compiled, globs)
> >> File "<doctest
> sage.graphs.strongly_regular_db.SRG_416_100_36_20[2]>", line 1, in <module>
> >> g.is_strongly_regular(parameters=True) # optional -
> gap_packages # long time
> >> NameError: name 'g' is not defined
> >> **********************************************************************
> >> 2 items had failures:
> >> 2 of 4 in sage.graphs.strongly_regular_db.SRG_280_135_70_60
> >> 2 of 4 in sage.graphs.strongly_regular_db.SRG_416_100_36_20
> >> [334 tests, 4 failures, 812.98 s]
> >> ----------------------------------------------------------------------
> >> sage -t --long --warn-long 53.5 src/sage/graphs/strongly_regular_db.pyx
> # 4 doctests failed
> >> ----------------------------------------------------------------------
> >> Total time for all tests: 813.1 seconds
> >> cpu time: 27.9 seconds
> >> cumulative wall time: 813.0 seconds
> >>
> >> The discrepancy between CPU time and elapsed time is puzzling. It s not
> an artifact : a system monitor confirmed that CPU activity was minimal
> during most of this test.
> >>
> >> I have been unable to reproduce the problem on my other machine,
> running the same rebuilt 9.0.beta7, where this tests passes without any
> failure.
> >>
> >> Cherry on the cake: I have been unable to run ptestalllong on this
> machine : this (reproducibly !) dies with a "too many open files" error
> (not captured in the log) about halfway, after a (failed) attempt to run
> sage -t --long src/sage/groups/perm_gps/permgroup_named.py, which passes
> normally on the other machine.
> >>
> >> Last lines of the log:
> >>
> >> Killing test src/sage/groups/perm_gps/permgroup_named.py
> >> Killing test src/sage/combinat/designs/twographs.py
> >> Killing test src/sage/databases/findstat.py
> >> ----------------------------------------------------------------------
> >> sage -t --long src/sage/graphs/strongly_regular_db.pyx # 5 doctests
> failed
> >> sage -t --long src/sage/graphs/generators/smallgraphs.py # 6 doctests
> failed
> >> sage -t --long src/sage/plot/animate.py # 7 doctests failed
> >> sage -t --long src/sage/combinat/posets/posets.py # 1 doctest failed
> >> sage -t --long src/sage/combinat/matrices/hadamard_matrix.py # 2
> doctests failed
> >> sage -t --long src/sage/misc/latex.py # 1 doctest failed
> >> sage -t --long src/sage/combinat/designs/ext_rep.py # 2 doctests
> failed
> >> sage -t --long src/sage/coding/databases.py # 2 doctests failed
> >> sage -t --long src/sage/misc/persist.pyx # 2 doctests failed
> >> sage -t --long src/sage/repl/load.py # 1 doctest failed
> >> Doctests interrupted: 1444/3793 files tested
> >> ----------------------------------------------------------------------
> >>
> >>
> >> Any hint ?
> >>
> >>
> >>
> >> Le mercredi 27 novembre 2019 14:56:36 UTC+1, Emmanuel Charpentier a
> écrit :
> >>>
> >>> Doubleplusungood...
> >>>
> >>> On Deboan testing running on core i5 + 8 GB RAM, ptestalllong gets me
> (part of) the usual suspects (transient failures, plus 6 (six) permanent
> failures due to abort:
> >>>
> >>> | File | Result
> | P/T |
> >>>
> |----------------------------------------------------------+---------------------+-----|
>
>
> >>> | src/sage/crypto/mq/sr.py | Killed
> due to abort | P |
> >>> | src/sage/rings/polynomial/multi_polynomial_sequence.py | Killed
> due to abort | P |
> >>> | src/sage/combinat/posets/posets.py | 1 doctest
> failed | T |
> >>> | src/sage/plot/animate.py | 7
> doctests failed | T |
> >>> | src/sage/combinat/matrices/hadamard_matrix.py | 2
> doctests failed | T |
> >>> | src/sage/rings/polynomial/pbori.pyx | Killed
> due to abort | P |
> >>> | src/sage/misc/latex.py | 1 doctest
> failed | T |
> >>> | src/sage/coding/databases.py | 2
> doctests failed | T |
> >>> | src/sage/misc/persist.pyx | 2
> doctests failed | T |
> >>> | src/sage/repl/load.py | 1 doctest
> failed | T |
> >>> | src/sage/graphs/graph_latex.py | 2
> doctests failed | T |
> >>> | src/sage/rings/polynomial/polynomial_ring_constructor.py | Killed
> due to abort | P |
> >>> | src/sage/sat/solvers/dimacs.py | Killed
> due to abort | P |
> >>> | src/doc/en/reference/sat/index.rst | Killed
> due to abort | P |
> >>> | src/sage/sat/boolean_polynomials.py | Killed
> due to abort | P |
> >>> | src/sage/misc/remote_file.py | 2
> doctests failed | T |
> >>> | src/sage/databases/findstat.py | 7
> doctests failed | T |
> >>> | src/sage/interfaces/magma_free.py | 2
> doctests failed | T |
> >>>
> >>> Details : see the enclose checkerrs.txt
> >>>
> >>> HTH,
> >>>
> >>> Le mercredi 27 novembre 2019 01:28:33 UTC+1, Volker Braun a écrit :
> >>>>
> >>>> As always, you can get the latest beta version from the "develop" git
> branch. Alternatively, the self-contained source tarball is at
> http://www.sagemath.org/download-latest.html
> >>>>
> >>>>
> >>>> d48a21c149 (tag: 9.0.beta7, trac/develop) Updated SageMath version to
> 9.0.beta7
> >>>> 22426a509b Trac #28797: 32-bit Python 3 failures in combinat
> >>>> 54072f6c3b Trac #28795: Python 3 overflow in IntegerModRing pow
> >>>> 7f2572fcdf Trac #28685: Upgrade from beautifulsoup to beautifulsoup4
> >>>> c597ceea70 Trac #28737: remove deprecated stuff in old coercion model
> >>>> a5c1185e7c Trac #28736: fix Texture for negative inputs
> >>>> 6c66325a63 Trac #28698: py3: HTML documentation for GlobalOptions
> does not show up correctly
> >>>> aa0ac42b16 Trac #28675: Deprecate GraphicsArray import from
> sage.plot.graphics
> >>>> 5882b7f376 Trac #28564: Tensor Fields and Sections: Naming
> Consistencies
> >>>> 8f9b67d25c Trac #28304: add type information to _repr_ of Macaulay2
> elements
> >>>> e6e616380a Trac #28214: Compute and display graph of nth-preimage
> tree
> >>>> a5bb40f91c Trac #27838: 5 internet doctests failing in findstat.py
> >>>> 6553536757 Trac #27790: compatibility with cplex 12.9
> >>>> 3c6a9108c1 Trac #23816: implement left action of matrices on scheme
> points
> >>>> 9c6f3dab7f Trac #28732: update sagetex to version 3.4
> >>>> f856552b81 Trac #28748: Python 3 debug build fails to start
> >>>> 232ae1bddc (tag: 9.0.beta6) Updated SageMath version to 9.0.beta6
> >>>>
> >> --
> >> You received this message because you are subscribed to the Google
> Groups "sage-release" group.
> >> To unsubscribe from this group and stop receiving emails from it, send
> an email to sage-r...@googlegroups.com <javascript:>.
> >> To view this discussion on the web visit
> https://groups.google.com/d/msgid/sage-release/6f12ad28-90ce-44d5-9393-fb62dac58ade%40googlegroups.com.
>
>
>
--
You received this message because you are subscribed to the Google Groups
"sage-release" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to sage-release+unsubscr...@googlegroups.com.
To view this discussion on the web visit
https://groups.google.com/d/msgid/sage-release/9b62bc6c-02a0-4eea-9f0d-a49417b427bf%40googlegroups.com.
