Le vendredi 29 novembre 2019 12:43:55 UTC+1, Dima Pasechnik a écrit : > > on that machine, could you > > ./sage -f gap_packages > > and try again?
Done. No relief :-(. Your test on SRG_280_135_70_60 just took about 5 minutes to fail (same messages as before, IIRC). > It seems that GAP's AtlasRep package is misbehaving for > you - it could be due to the fact that it needs internet > to pull data initially (and caches it): Aha ! My problematic machine is stuck behind our "public-corporate" firewall (i. e. a corporate firewall done wrong...). What can get used varies by protocol: - HTTP and HTTPS work, using specfic proxy addresses ; - I have to use passive FTP mode if I need FTP (more and more rare...) ; - SSH is open. What does AtlasRep uses ? > cf. > > http://www.math.rwth-aachen.de/~Thomas.Breuer/atlasrep/ > Note that the package archives do NOT contain the database part of the > package; the GAP interface accesses the data on demand via the > internet. > > On Fri, Nov 29, 2019 at 11:35 AM Emmanuel Charpentier > <emanuel.c...@gmail.com <javascript:>> wrote: > > > > Well... applying Trac#28818 didn't solve my problem. I cut'n'pasted the > end of what is printed by make ptestalllong in the enclosed file > end_of_ptestalllong.txt. > > > > HTH... > > > > Le vendredi 29 novembre 2019 11:19:41 UTC+1, Emmanuel Charpentier a > écrit : > >> > >> I'll try that patch on my problematic machine and report (but that > won't be fast...). > >> > >> Le vendredi 29 novembre 2019 00:52:43 UTC+1, Dima Pasechnik a écrit : > >>> > >>> On Thu, Nov 28, 2019 at 7:45 PM Dima Pasechnik <dim...@gmail.com> > wrote: > >>> > > >>> > what does happen if you run > >>> > > >>> > sage: from sage.graphs.strongly_regular_db import SRG_280_135_70_60 > >>> > sage: SRG_280_135_70_60() > >>> > > >>> > Does it print > >>> > > >>> > J_2 on cosets of 3.PGL(2,9): Graph on 280 vertices > >>> > >>> here is a ticket that improves this function by switching from GAP to > >>> libGAP interface, > >>> please review > >>> https://trac.sagemath.org/ticket/28818 > >>> > >>> Perhaps that was the general flakiness of pexpect that caused that > failure. > >>> > >>> Dima > >>> > > >>> > ? > >>> > > >>> > > >>> > On Thu, 28 Nov 2019, 19:06 Emmanuel Charpentier, < > emanuel.c...@gmail.com> wrote: > >>> >> > >>> >> After rebuilding from scratch, reinstalling packages (this time > including gap_packages), ptestlong gives me : > >>> >> > >>> >> no transient failure > >>> >> the usual permanent failure on gap_packages > >>> >> and a very strange, reproducible failure on > rc/sage/graphs/strongly_regular_db.pyx. > >>> >> > >>> >> > >>> >> Details on the latter : > >>> >> > >>> >> charpent@p-202-021:/usr/local/sage-9$ sage -t --long --warn-long > 53.5 src/sage/graphs/strongly_regular_db.pyx # 4 doctests failed > >>> >> Running doctests with ID 2019-11-28-19-21-27-1f4d95ea. > >>> >> Git branch: develop > >>> >> Using > --optional=build,dochtml,dot2tex,fricas,gap_packages,giacpy_sage,libsemigroups,memlimit,python2,sage,sagenb > > > >>> >> Doctesting 1 file. > >>> >> sage -t --long --warn-long 53.5 > src/sage/graphs/strongly_regular_db.pyx > >>> >> > ********************************************************************** > >>> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2242, in > sage.graphs.strongly_regular_db.SRG_280_135_70_60 > >>> >> Failed example: > >>> >> g=SRG_280_135_70_60() # long time # optional - > gap_packages > >>> >> Exception raised: > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py", > line 769, in _eval_line > >>> >> raise RuntimeError("%s produced error output\n%s\n > executing %s"%(self, error,line)) > >>> >> RuntimeError: Gap produced error output > >>> >> Error, Record Element: <rec> must be a record (not a boolean or > fail) > >>> >> > >>> >> executing \$sage1:=AtlasGenerators("J2",2).generators;; > >>> >> > >>> >> During handling of the above exception, another exception > occurred: > >>> >> > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py", > > line 1471, in __init__ > >>> >> self._name = parent._create(value, name=name) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py", > > line 491, in _create > >>> >> self.set(name, value) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py", > line 1427, in set > >>> >> self._eval_line(cmd, allow_use_file=True) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py", > line 803, in _eval_line > >>> >> raise RuntimeError(exc) > >>> >> RuntimeError: Gap produced error output > >>> >> Error, Record Element: <rec> must be a record (not a boolean or > fail) > >>> >> > >>> >> executing \$sage1:=AtlasGenerators("J2",2).generators;; > >>> >> > >>> >> During handling of the above exception, another exception > occurred: > >>> >> > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 681, in _run > >>> >> self.compile_and_execute(example, compiler, test.globs) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 1123, in compile_and_execute > >>> >> exec(compiled, globs) > >>> >> File "<doctest > sage.graphs.strongly_regular_db.SRG_280_135_70_60[1]>", line 1, in <module> > >>> >> g=SRG_280_135_70_60() # long time # > optional - gap_packages > >>> >> File "sage/graphs/strongly_regular_db.pyx", line 2253, in > sage.graphs.strongly_regular_db.SRG_280_135_70_60 > (build/cythonized/sage/graphs/strongly_regular_db.c:34308) > >>> >> J2 = > PermutationGroup(gap('AtlasGenerators("J2",2).generators')) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py", > > line 288, in __call__ > >>> >> return cls(self, x, name=name) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py", > > line 1476, in __init__ > >>> >> raise_(TypeError, TypeError(*x.args), sys.exc_info()[2]) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/six.py", line 692, in > reraise > >>> >> raise value.with_traceback(tb) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/expect.py", > > line 1471, in __init__ > >>> >> self._name = parent._create(value, name=name) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/interface.py", > > line 491, in _create > >>> >> self.set(name, value) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py", > line 1427, in set > >>> >> self._eval_line(cmd, allow_use_file=True) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/interfaces/gap.py", > line 803, in _eval_line > >>> >> raise RuntimeError(exc) > >>> >> TypeError: Gap produced error output > >>> >> Error, Record Element: <rec> must be a record (not a boolean or > fail) > >>> >> > >>> >> executing \$sage1:=AtlasGenerators("J2",2).generators;; > >>> >> > ********************************************************************** > >>> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2243, in > sage.graphs.strongly_regular_db.SRG_280_135_70_60 > >>> >> Failed example: > >>> >> g.is_strongly_regular(parameters=True) # long time # optional - > gap_packages > >>> >> Exception raised: > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 681, in _run > >>> >> self.compile_and_execute(example, compiler, test.globs) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 1123, in compile_and_execute > >>> >> exec(compiled, globs) > >>> >> File "<doctest > sage.graphs.strongly_regular_db.SRG_280_135_70_60[2]>", line 1, in <module> > >>> >> g.is_strongly_regular(parameters=True) # long time # > optional - gap_packages > >>> >> NameError: name 'g' is not defined > >>> >> > ********************************************************************** > >>> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2349, in > sage.graphs.strongly_regular_db.SRG_416_100_36_20 > >>> >> Failed example: > >>> >> g = SRG_416_100_36_20() # optional - > gap_packages # long time > >>> >> Exception raised: > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 681, in _run > >>> >> self.compile_and_execute(example, compiler, test.globs) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 1123, in compile_and_execute > >>> >> exec(compiled, globs) > >>> >> File "<doctest > sage.graphs.strongly_regular_db.SRG_416_100_36_20[1]>", line 1, in <module> > >>> >> g = SRG_416_100_36_20() # optional - > gap_packages # long time > >>> >> File "sage/graphs/strongly_regular_db.pyx", line 2359, in > sage.graphs.strongly_regular_db.SRG_416_100_36_20 > (build/cythonized/sage/graphs/strongly_regular_db.c:36484) > >>> >> h.add_edges(g.Orbit([1,5],libgap.OnSets)) > >>> >> File "sage/libs/gap/element.pyx", line 2666, in > sage.libs.gap.element.GapElement_MethodProxy.__call__ > (build/cythonized/sage/libs/gap/element.c:20291) > >>> >> return GapElement_Function.__call__(self, * > ([self.first_argument] + list(args))) > >>> >> File "sage/libs/gap/element.pyx", line 2514, in > sage.libs.gap.element.GapElement_Function.__call__ > (build/cythonized/sage/libs/gap/element.c:19304) > >>> >> sig_on() > >>> >> sage.libs.gap.util.GAPError: Error, no method found! Error, no > 1st choice method found for `GeneratorsOfMagmaWithInverses' on 1 arguments > >>> >> The 1st argument is 'fail' which might point to an earlier > problem > >>> >> > ********************************************************************** > >>> >> File "src/sage/graphs/strongly_regular_db.pyx", line 2350, in > sage.graphs.strongly_regular_db.SRG_416_100_36_20 > >>> >> Failed example: > >>> >> g.is_strongly_regular(parameters=True) # optional - > gap_packages # long time > >>> >> Exception raised: > >>> >> Traceback (most recent call last): > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 681, in _run > >>> >> self.compile_and_execute(example, compiler, test.globs) > >>> >> File > "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/doctest/forker.py", > line 1123, in compile_and_execute > >>> >> exec(compiled, globs) > >>> >> File "<doctest > sage.graphs.strongly_regular_db.SRG_416_100_36_20[2]>", line 1, in <module> > >>> >> g.is_strongly_regular(parameters=True) # optional - > gap_packages # long time > >>> >> NameError: name 'g' is not defined > >>> >> > ********************************************************************** > >>> >> 2 items had failures: > >>> >> 2 of 4 in sage.graphs.strongly_regular_db.SRG_280_135_70_60 > >>> >> 2 of 4 in sage.graphs.strongly_regular_db.SRG_416_100_36_20 > >>> >> [334 tests, 4 failures, 812.98 s] > >>> >> > ---------------------------------------------------------------------- > >>> >> sage -t --long --warn-long 53.5 > src/sage/graphs/strongly_regular_db.pyx # 4 doctests failed > >>> >> > ---------------------------------------------------------------------- > >>> >> Total time for all tests: 813.1 seconds > >>> >> cpu time: 27.9 seconds > >>> >> cumulative wall time: 813.0 seconds > >>> >> > >>> >> The discrepancy between CPU time and elapsed time is puzzling. It s > not an artifact : a system monitor confirmed that CPU activity was minimal > during most of this test. > >>> >> > >>> >> I have been unable to reproduce the problem on my other machine, > running the same rebuilt 9.0.beta7, where this tests passes without any > failure. > >>> >> > >>> >> Cherry on the cake: I have been unable to run ptestalllong on this > machine : this (reproducibly !) dies with a "too many open files" error > (not captured in the log) about halfway, after a (failed) attempt to run > sage -t --long src/sage/groups/perm_gps/permgroup_named.py, which passes > normally on the other machine. > >>> >> > >>> >> Last lines of the log: > >>> >> > >>> >> Killing test src/sage/groups/perm_gps/permgroup_named.py > >>> >> Killing test src/sage/combinat/designs/twographs.py > >>> >> Killing test src/sage/databases/findstat.py > >>> >> > ---------------------------------------------------------------------- > >>> >> sage -t --long src/sage/graphs/strongly_regular_db.pyx # 5 > doctests failed > >>> >> sage -t --long src/sage/graphs/generators/smallgraphs.py # 6 > doctests failed > >>> >> sage -t --long src/sage/plot/animate.py # 7 doctests failed > >>> >> sage -t --long src/sage/combinat/posets/posets.py # 1 doctest > failed > >>> >> sage -t --long src/sage/combinat/matrices/hadamard_matrix.py # 2 > doctests failed > >>> >> sage -t --long src/sage/misc/latex.py # 1 doctest failed > >>> >> sage -t --long src/sage/combinat/designs/ext_rep.py # 2 doctests > failed > >>> >> sage -t --long src/sage/coding/databases.py # 2 doctests failed > >>> >> sage -t --long src/sage/misc/persist.pyx # 2 doctests failed > >>> >> sage -t --long src/sage/repl/load.py # 1 doctest failed > >>> >> Doctests interrupted: 1444/3793 files tested > >>> >> > ---------------------------------------------------------------------- > >>> >> > >>> >> > >>> >> Any hint ? > >>> >> > >>> >> > >>> >> > >>> >> Le mercredi 27 novembre 2019 14:56:36 UTC+1, Emmanuel Charpentier a > écrit : > >>> >>> > >>> >>> Doubleplusungood... > >>> >>> > >>> >>> On Deboan testing running on core i5 + 8 GB RAM, ptestalllong gets > me (part of) the usual suspects (transient failures, plus 6 (six) permanent > failures due to abort: > >>> >>> > >>> >>> | File | > Result | P/T | > >>> >>> > |----------------------------------------------------------+---------------------+-----| > > > >>> >>> | src/sage/crypto/mq/sr.py | > Killed due to abort | P | > >>> >>> | src/sage/rings/polynomial/multi_polynomial_sequence.py | > Killed due to abort | P | > >>> >>> | src/sage/combinat/posets/posets.py | 1 > doctest failed | T | > >>> >>> | src/sage/plot/animate.py | 7 > doctests failed | T | > >>> >>> | src/sage/combinat/matrices/hadamard_matrix.py | 2 > doctests failed | T | > >>> >>> | src/sage/rings/polynomial/pbori.pyx | > Killed due to abort | P | > >>> >>> | src/sage/misc/latex.py | 1 > doctest failed | T | > >>> >>> | src/sage/coding/databases.py | 2 > doctests failed | T | > >>> >>> | src/sage/misc/persist.pyx | 2 > doctests failed | T | > >>> >>> | src/sage/repl/load.py | 1 > doctest failed | T | > >>> >>> | src/sage/graphs/graph_latex.py | 2 > doctests failed | T | > >>> >>> | src/sage/rings/polynomial/polynomial_ring_constructor.py | > Killed due to abort | P | > >>> >>> | src/sage/sat/solvers/dimacs.py | > Killed due to abort | P | > >>> >>> | src/doc/en/reference/sat/index.rst | > Killed due to abort | P | > >>> >>> | src/sage/sat/boolean_polynomials.py | > Killed due to abort | P | > >>> >>> | src/sage/misc/remote_file.py | 2 > doctests failed | T | > >>> >>> | src/sage/databases/findstat.py | 7 > doctests failed | T | > >>> >>> | src/sage/interfaces/magma_free.py | 2 > doctests failed | T | > >>> >>> > >>> >>> Details : see the enclose checkerrs.txt > >>> >>> > >>> >>> HTH, > >>> >>> > >>> >>> Le mercredi 27 novembre 2019 01:28:33 UTC+1, Volker Braun a écrit > : > >>> >>>> > >>> >>>> As always, you can get the latest beta version from the "develop" > git branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > >>> >>>> > >>> >>>> > >>> >>>> d48a21c149 (tag: 9.0.beta7, trac/develop) Updated SageMath > version to 9.0.beta7 > >>> >>>> 22426a509b Trac #28797: 32-bit Python 3 failures in combinat > >>> >>>> 54072f6c3b Trac #28795: Python 3 overflow in IntegerModRing pow > >>> >>>> 7f2572fcdf Trac #28685: Upgrade from beautifulsoup to > beautifulsoup4 > >>> >>>> c597ceea70 Trac #28737: remove deprecated stuff in old coercion > model > >>> >>>> a5c1185e7c Trac #28736: fix Texture for negative inputs > >>> >>>> 6c66325a63 Trac #28698: py3: HTML documentation for GlobalOptions > does not show up correctly > >>> >>>> aa0ac42b16 Trac #28675: Deprecate GraphicsArray import from > sage.plot.graphics > >>> >>>> 5882b7f376 Trac #28564: Tensor Fields and Sections: Naming > Consistencies > >>> >>>> 8f9b67d25c Trac #28304: add type information to _repr_ of > Macaulay2 elements > >>> >>>> e6e616380a Trac #28214: Compute and display graph of nth-preimage > tree > >>> >>>> a5bb40f91c Trac #27838: 5 internet doctests failing in > findstat.py > >>> >>>> 6553536757 Trac #27790: compatibility with cplex 12.9 > >>> >>>> 3c6a9108c1 Trac #23816: implement left action of matrices on > scheme points > >>> >>>> 9c6f3dab7f Trac #28732: update sagetex to version 3.4 > >>> >>>> f856552b81 Trac #28748: Python 3 debug build fails to start > >>> >>>> 232ae1bddc (tag: 9.0.beta6) Updated SageMath version to 9.0.beta6 > >>> >>>> > >>> >> -- > >>> >> You received this message because you are subscribed to the Google > Groups "sage-release" group. > >>> >> To unsubscribe from this group and stop receiving emails from it, > send an email to sage-r...@googlegroups.com. > >>> >> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/6f12ad28-90ce-44d5-9393-fb62dac58ade%40googlegroups.com. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com <javascript:>. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/58a2ac85-5054-4748-afce-e53edc1376bb%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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