Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 09:00:07PM -0500, Peter O'Gorman wrote: > Martin Costabel wrote: > > > I guess pogma needs to add another patch for autoconf-2.64. > > Or Fink needs to go back to autoconf-2.63. > > > > Well, gcc requires the use of specific, non-vendor patched versions of > the autotools

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Peter O'Gorman
Martin Costabel wrote: > I guess pogma needs to add another patch for autoconf-2.64. > Or Fink needs to go back to autoconf-2.63. > Well, gcc requires the use of specific, non-vendor patched versions of the autotools, the version of autoconf currently required is 2.59. Using any other version to

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William Scott
Hopefully it will work now. (revision 4) On Sat, August 1, 2009 3:48 pm, Martin Costabel wrote: > William G. Scott wrote: >> It turns out there is a typo on line 38 of the patch file >> >> +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages >> >> should be >> >> +sitepk...@in

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Martin Costabel
monipol wrote: > On 01/08/2009, at 18:14, Jack Howarth wrote: [] >> Could you grab a copy of the older gcc42 packaging from... >> >> http://fink.cvs.sourceforge.net/viewvc/*checkout*/fink/dists/10.4/unstable/main/finkinfo/languages/gcc42.info?revision=1.10 >> >> and try replacing the copy in 10.4

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 08:45:49PM -0300, monipol wrote: > On 01/08/2009, at 18:36, monipol wrote: >> On 01/08/2009, at 18:08, Jack Howarth wrote: >>> On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: On 01/08/2009, at 16:24, Mike Zanker wrote: > This is what I'm getting: >

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:36, monipol wrote: > On 01/08/2009, at 18:08, Jack Howarth wrote: >> On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: >>> On 01/08/2009, at 16:24, Mike Zanker wrote: This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-s

[Fink-users] [SPAM] gcc42-4.2.4 build failure

2009-08-01 Thread Jean-François Mertens
Build of gcc42-4.2.4 failed right at the start with : > cd boehm-gc > autoheader -I .. -I ../config > configure.ac:52: error: m4_copy: won't overwrite defined macro: > _AC_ARG_VAR_PRECIOUS > configure.ac:52: the top level > autom4te-2.64: /sw/bin/m4 failed with exit status: 1 This is with fi

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
On Aug 1, 2009, at 3:48 PM, Martin Costabel wrote: > William G. Scott wrote: >> It turns out there is a typo on line 38 of the patch file >> +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site- >> packages >> should be >> +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site-

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Martin Costabel
William G. Scott wrote: > It turns out there is a typo on line 38 of the patch file > > +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages > > should be > > +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site-packages > > This corrects the problem you found. > > H

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Mike Zanker
On 1/8/09 22:08, Jack Howarth wrote: > Are both of you running Xcode 3.1b3 on Leopard? I did my test build > on a dual G5 running 10.5.7 with Xcode 3.1.3 without issues. What does... > > which autoheader > > and > > /usr/bin/autoheader -V > > return on your machines? Xcode 3.1.3 has... > > a

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:14, Jack Howarth wrote: > On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: >> On 01/08/2009, at 16:24, Mike Zanker wrote: >>> This is what I'm getting: >>> >>> bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- >>> owner >>> --no-same-permissions >>> [

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 18:08, Jack Howarth wrote: > On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: >> On 01/08/2009, at 16:24, Mike Zanker wrote: >>> This is what I'm getting: >>> >>> bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- >>> owner >>> --no-same-permissions >>> [

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: > On 01/08/2009, at 16:24, Mike Zanker wrote: >> This is what I'm getting: >> >> bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- >> owner >> --no-same-permissions >> [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gc

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Jack Howarth
On Sat, Aug 01, 2009 at 05:52:38PM -0300, monipol wrote: > On 01/08/2009, at 16:24, Mike Zanker wrote: >> This is what I'm getting: >> >> bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- >> owner >> --no-same-permissions >> [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gc

Re: [Fink-users] Error building gcc42-shlibs

2009-08-01 Thread monipol
On 01/08/2009, at 16:24, Mike Zanker wrote: > This is what I'm getting: > > bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same- > owner > --no-same-permissions > [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ] > patch -p1 < /sw/fink/dists/unstable/main/finkinfo/l

[Fink-users] Error building gcc42-shlibs

2009-08-01 Thread Mike Zanker
This is what I'm getting: bzip2 -dc /sw/src/gcc-4.2.4.tar.bz2 | /sw/bin/tar -xf - --no-same-owner --no-same-permissions [ -r /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch ] patch -p1 < /sw/fink/dists/unstable/main/finkinfo/languages/gcc42.patch patching file libgomp/testsuite/libgo

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
It turns out there is a typo on line 38 of the patch file +sitepk...@install_dir$${prefix}/lib/python${PY_VERSION}/site-packages should be +sitepk...@install_dir@${prefix}/lib/python${PY_VERSION}/site-packages This corrects the problem you found. However there are some additional problems in t

Re: [Fink-users] failed to install apbs

2009-08-01 Thread William G. Scott
Hi Alan: It looks like there are multiple problems with this package and I think I am going to throw the vile thing into the fire and start over. I can't give you my debians because they were built for /sw64 instead of /sw. If you need apbs in a hurry for a pymol plugin, you can grab David

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alan
Dear Alexander, When you did a fresh install, the first package you installed was "fink install apbs" and the lots of dependences (including python 2.6) came together, right? Looking at the error and log I have the suspicion that if I install apbs and then during the process python 2.6 is build I

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alexander Hansen
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Alan wrote: > Hi there, > Well, I found this: > > find /sw/src/fink.build | grep site > /sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/opal/ZSI/@INSTALL_DIR45643{prefix}/lib/python2.6/site-packages > > Apparently, at least IMHO, variable @

Re: [Fink-users] failed to install apbs

2009-08-01 Thread Alan
Hi there, Well, I found this: find /sw/src/fink.build | grep site /sw/src/fink.build/apbs-1.1.0-2/apbs-1.1.0-source/contrib/opal/ZSI/@INSTALL_DIR45643{prefix}/lib/python2.6/site-packages Apparently, at least IMHO, variable @INSTALL_DIR@ is not correctly being replaced in apbs.info: sed 's|@INSTAL