Forward of a mail received as list owner
-- Forwarded message --
From: contact2005
Date: Tue, Feb 28, 2012 at 4:04 PM
Subject: IE9 64 bits crash with Jmol
To: jmol-developers-ow...@lists.sourceforge.net
(this message has been rejected but I really think it could be interesting
f
Hi,
The problem is that the date displayed in the menu comes from the last time
JmolConstants.java file was committed in SVN.
(JmolConstants.java, lines 85 and 86)
Nico
2012/3/1 Angel Herráez
> El 28 Feb 2012 a las 11:23, Robert Hanson escribió:
> > feel free!
>
> The splash is now updated on
Hi,
You can check also tools like xvfb which can create a virtual display.
Even without the GUI, image generation may require a display for some image
operations (like fonts, ...), this is a Java limitation.
I used xvfb in several projects where I needed to create images without
having a real dis
Hi,
Thanks for the translation, I've included it in Jmol, it will be available
in the next release 12.3.x release.
Nico
2012/3/23 Adrià Cereto Massagué
> Hello,
>
> I have updated the catalan translation of JmolApplet.
> msgfmt gives some warnings but I see nothing wrong with the lines it
> do
Should be working that way for next releases.
On Mon, Mar 5, 2012 at 10:00 PM, Robert Hanson wrote:
> If we could switch that to the properties file, that would be better.
>
> On Mon, Mar 5, 2012 at 1:49 PM, Nicolas Vervelle wrote:
>
>> Hi,
>>
>> The problem is
Welcome,
Any interests in specific parts/features of Jmol ?
Nico
On Fri, Apr 20, 2012 at 10:21 AM, Gong Zhang wrote:
> Hi,
> I am pleasure to join the developer group of Jmol. I have check out the
> source code and build the project in the IDE. Firstly, I will read and
> understand source co
Hi,
I think that by default the build script doesn't build everything in Jmol
(translations, documentation probably, ...).
On my own computer, I build Jmol using targets spotless (for cleanup) and
dist (for building everything)
I'm also not sure that everything runs correctly inside Eclipse, but i
Hi,
For changing translations, you have at least 2 ways :
- Use launchpad service to translate directly there. I check regularly
if new translations have been done and include them in Jmol
- Translate directly the .po files, and send them either to me, Angel,
the developers list, ...
Hi Tomas,
Ok also for me for deploying Jmol releases into a Maven repository.
I'm already using an Ant script for deploying Jmol releases into
sourceforge (tools/jmol-release.xml).
If you can write the scripts for the deployment, the maven deployment could
be added in this script.
Nico
On Mon,
Hi,
I have just included the latest translations done on launchpad in Jmol
trunk.
They will be available in SVN in a few minutes
Nico
On Sat, May 19, 2012 at 5:53 AM, Gong Zhang wrote:
> Hi,
>I am trying to do Chinese translation in the launchpad service.
>
> Thanks.
> Signed-off-by:u50
o+Generate+PGP+Signatures+With+Maven(note:
> be careful about the sub-key problem mentioned at the website)
>
> Tomas
>
>
> On May 24, 2012, at 4:24 AM, Nicolas Vervelle wrote:
>
> Hi Tomas,
>
> Ok also for me for deploying Jmol releases into a Maven repository.
> I&
mol/jmol/
> (signed
> by my own GPG key).
>
> These artifacts will now be checked by the Sonatype team and if they
> pass the check, Sonatype will enable automatic publishing to Maven Central.
>
> Tomas
>
>
> On May 29, 2012, at 3:17 PM, Nicolas Vervelle wrote:
&
On Tue, May 29, 2012 at 9:43 AM, Tomas Pluskal wrote:
> Do you plan to have both stable releases (12.2.x currently) and
> pre-releases (12.3.x currently) ?
> How would they be distinguished so that people wanting only stable
> releases will automatically get the last stable release ?
>
>
> I s
Hi Angel,
I don't have the answer to your question, but it made me think of having
comments for translators.
I have modified the build script so that comments starting with 3 / (///)
placed just before a call to GT._() will be included in the .po/.pot files.
I suggest that we used something like
Hi Angel,
Sorry for the long delay to reply, I was on holidays when you sent your
mail and much work to do since coming back.
I've had a quick look at MW options (
http://www.mediawiki.org/wiki/Manual:Configuration_settings#Users ), and I
didn't find an option to require authorization to create an
Hi Angel,
You're right, we should put something more to fight against this.
ConfirmAccount extension seems now available again.
I'll try to upgrade the wiki this weekend and put ConfirmAccount in service.
Nico
On Fri, Nov 23, 2012 at 9:15 PM, Angel Herráez wrote:
> Hi Nico
>
> The antispam me
Hi Angel,
I've started the upgrade this weekend (wiki is in read only mode for the
moment).
I tried to upgrade to MW 1.20, but my hosting service doesn't have the
required version of PHP.
I've to try with MW 1.19.
Nico
On Fri, Nov 23, 2012 at 9:18 PM, Nicolas Vervelle wro
No idea... I don't even know what we are using Naga for (I don't see it in
the project).
But it's probably not very difficult to go up one release.
Nico
On Mon, Dec 31, 2012 at 6:06 PM, Robert Hanson wrote:
> I'm sure we can. Nico, is this something you are familiar with? Is it a
> simple oper
Hi,
The Maven artifact is generated using tools/jmol-sonatype.xml.
Nico
On Thu, Feb 14, 2013 at 11:04 PM, N David Brown wrote:
> How do you generate the Maven artifact available in Maven Central from
> your Jmol SVN working directory?
>
> Running any of the build.xml variants only generates s
Hi,
I'm currently travelling abroad, and so far the internet accesses I had
weren't very fast.
If I get a fast access at some point, I will do the release, otherwise it
will have to wait a month or for someone else to make this release.
Nicolas
On Thu, Feb 21, 2013 at 11:17 AM, N David Brown w
Hi Bob,
I'm still travelling with poor internet access. I let you do it, or it will
have to wait two weeks.
Cheers
Nico
On Sun, Mar 10, 2013 at 3:05 AM, Robert Hanson wrote:
> I'm synced. Nico -- do you want to initiate the upgrade? I won't check
> anything in until I hear from you.
>
>
> On
Hi Bob,
For a certificate from a trusted authority, you can get one from Certum for
free as an open source developer.
I got one about two weeks ago, and it seems to work ok.
https://www.certum.eu/certum/cert,offer_en_open_source_cs.xml
Nico
On Thu, Oct 31, 2013 at 11:38 PM, Robert Hanson wrote
Hi Bob,
Hard constraints are indeed being added to Java for applets and JNLP :-(
I think it will still be possible to use self signed applets locally for
development by circumventing this mechanism : a trusted certificate is
nothing more than a certificate issued by a root certificate authority w
onal.>>
>
> It's all about how complex this is going to be within an organization that
> requires local testing. Right?
>
>
>
> On Wed, Nov 6, 2013 at 8:08 AM, Nicolas Vervelle wrote:
>
>> Hi Bob,
>>
>> Hard constraints are indeed being added to Java
when I see it. That's not one of
> options they mention in the blog. Seems to me that would have been the
> obvious solution.
>
>
> On Wed, Nov 6, 2013 at 8:30 AM, Nicolas Vervelle wrote:
>
>> You misunderstood me.
>>
>> You will need to sign Jmol app
Hi,
I've produced jars for Jmol signet applet that are signed with my own
trusted certificate.
The jars are also time-stamped.
You can try them by downloading at
http://site4145.mutu.sivit.org/Temporary/JmolAppletSigned.zip
Nico
--
On Thu, Nov 7, 2013 at 10:10 AM, Rzepa, Henry S wrote:
> Forgot to mention that I did get this message when I attempted to run
> the newly signed applet
>
>
> Its the usual message about the JAR file manifest does not contain the
> Permissions attribute and will be blocked in the future.
>
>
On Thu, Nov 7, 2013 at 10:14 AM, Nicolas Vervelle wrote:
>
>
>
> On Thu, Nov 7, 2013 at 10:10 AM, Rzepa, Henry S wrote:
>
>> Forgot to mention that I did get this message when I attempted to run
>> the newly signed applet
>>
>>
>> Its the usual
Just forgot to answer about the .tstamp files: just ignore them, they are
here to speed up compilation when nothing has changed.
On Mon, Mar 10, 2014 at 2:31 PM, Nicolas Vervelle wrote:
> Hi Bob,
>
> I haven't take care of the translations for quite some time...
>
> For u
Hi Bob,
I haven't take care of the translations for quite some time...
For updating the .pot and .po files with the texts in the Java files, if
you already have gettext tools installed, you just have to set to true the
two variables you have found and commit at the end.
It may be better not to mo
Hi guys,
Currently, all elements to build Jmol website are under SVN in the Jmol-web
Eclipse project.
As Angel said, I think it requires a lot of work to update it with the
current status of Jmol.
The Jmol-web project contains 2 Ant build files:
- build.xml for building a local version of the
Bob,
Page is populated through templates (the {{...}}).
When you are previewing in edit mode, you can see at the bottom of the page
a list of templates used on this page.
Click on the one you want to modify.
Nico
On Tue, Jul 29, 2014 at 10:26 AM, Robert Hanson wrote:
> http://wiki.jmol.org/in
Hi,
Yes, I handle this from time to time.
I'm currently traveling a lot, so not too much lately.
Nico
On Fri, Jan 23, 2015 at 2:55 PM, Angel Herráez wrote:
> El 23 Jan 2015 a las 7:02, Robert Hanson escribió:
> > Who is handling these? Anyone?
> > jmol-users-boun...@lists.sourceforge.net
>
> I
Hi,
Yes, sourceforge had a big crash last week, that requires restoring
everything from backup...
I checked in at the beginning of the week, and they were still trying to
restore all services.
I don't know what's the current status, they should have posted something
on their website.
Nico
On Fri
SVN access should have been restored this weekend by sourceforge.
On Fri, Jul 24, 2015 at 11:36 AM, Michael Banck wrote:
> Hi,
>
> On Fri, Jul 24, 2015 at 11:26:06AM +0200, Rolf Huehne wrote:
> > since a week (starting on July 17 2015) I have problems connecting to
> > the SVN server for mirror
On Mon, Jul 27, 2015 at 1:11 PM, Michael Banck wrote:
> On Mon, Jul 27, 2015 at 01:02:17PM +0200, Nicolas Vervelle wrote:
> > SVN access should have been restored this weekend by sourceforge.
>
> I heard some project lost a couple of SVN revisions because the backup
> did not
Hi Bob,
Apparently, this is a change that is planned for Java 9: to remove the
possibility to use '_' as an identifier.
See http://openjdk.java.net/jeps/213 and
https://bugs.openjdk.java.net/browse/JDK-8061549
It was just a convenient way for defining translatable strings, but we can
change it fo
On Thu, Feb 18, 2016 at 8:52 PM, Robert Hanson wrote:
> Angel, it's just that the gtext processor is set up for "_" -- I guess,
> though, that must just be a setting. We liked "_" because it was so short,
> and actually that does help in keeping file sizes as low as possible. So,
> Nico, I guess
Sorry for the disturbance...
Nico
--
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Click to learn more.
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On Tue, Aug 30, 2016 at 10:16 AM, Spencer Bliven
wrote:
> I would advocate that maven should get a new artifact whenever sourceforge
> gets a new jar. For this reason I've been including the date as part of the
> version number. There is no way to silently replace a previous jar without
> giving
like things that are good enough for sf
> should be full releases.
>
I haven't followed how Bob is keeping up with the version numbering.
In the old time, there was a stable branch (minor=0, 2, 4, 6, 8...) and a
development (minor=1, 3, 5, 7, 9...), but I'm not sure this distinction
Egon Willighagen wrote:
> On Saturday 24 June 2006 21:32, eric capps wrote:
>
>> how, within eclipse, would i go about building Jmol.jar and
>> JmolApplet.jar? i can run them just fine from w/in eclipse but i'd
>> like to be able to test them elsewhere.
>>
>> if this is something i do outside
Rzepa, Henry wrote:
>>> I have searched for OpenGL + Java in the list, and noted some reference
>>> to the use of jogl for PyMol, but not found it for Jmol.
>>>
>>> My reason for asking is that we have a Stereo display system (passive
>>> glasses) which uses Quad Buffered OpenGL stereo, and
Egon Willighagen wrote:
> On Tuesday 22 August 2006 15:40, Egon Willighagen wrote:
>
>> Bob and I have just renamed Bob's private development branch for the
>> 10.x.46 (etc) series in SVN.
>>
>> It was previously available as jmol/branches/bob200603, and is now
>> available as jmol/branches/v1
A little question about Bmp.java.
Currently v10.9 reports errors under Eclipse :
- Bmp has been moved in unused_code
- JUnit tests still use it
What should be done ?
Nico
Egon Willighagen wrote:
> On Tuesday 22 August 2006 15:40, Egon Willighagen wrote:
>
>> Bob and I have just renamed Bob's
Hi everyone,
The 10.9 branch (aka Bob's branch) will become the official release in a
near future and will replace the current trunk in SVN.
Before doing that, we need to be sure that every useful modification
that has been made in the trunk has also been made in Bob's branch.
I am currently ma
t; We should merge ALL other directories.
>
> Bob
>
> Nicolas Vervelle wrote:
>
>
>> Hi everyone,
>>
>> The 10.9 branch (aka Bob's branch) will become the official release in a
>> near future and will replace the current trunk in SVN.
>>
>&
Should we import Point3fi class into 10.9 branch ?
The class was created by Miguel to simplify code on Atom (treated like a
Point3f)
http://svn.sourceforge.net/viewvc/jmol?view=rev&revision=5072
-
Using Tomcat but need to d
> What I was finding were things now like:
>
> atom1.distance(atom2)
>
> in place of
>
> atom1.point3f.distance(atom2.point3f)
>
> Should
>
> atom1.distance(atom2)
>
> work?
>
> Bob
>
> Nicolas Vervelle wrote:
>
>
>> Should we
Bob Hanson wrote:
> Keep talking. I can see the benefit. All atoms DO have both real and
> screen coordinates, and I think the screen coordinates were in this
> structure as well, right? I can be convinced, especially if
> atom1.distance(atom2) works. And there certainly could be other uses fo
Should we merge this one ?
"reintroduce compiler support for multiple embedded expressions"
http://svn.sourceforge.net/viewvc/jmol?view=rev&revision=4838
I don't know why it was done.
Nico
-
Using Tomcat but need to do more?
Are there differences between branches/v10_9/Jmol-datafiles and
trunk/Jmol_datafiles ?
If so, which one should be kept ?
Nico
-
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly
caffeine.xyz;connect 3.5 (oxygen) (hydrogen) hbond create;
>
> works, then I guess it's fine.
>
> Bob
>
>
>
>
> Nicolas Vervelle wrote:
>
>
>> Should we merge this one ?
>> "reintroduce compiler support for multiple embedded expressions&q
in file
- cml/nsc244a.cml: No atoms in file
- cml/nsc2582.cml: No atoms in file
- cml/nsc484.cml: No atoms in file
- gaussian/tms.log; Could not read file:
java.lang.ArrayIndexOutOfBoundsException: 5
Nico
> Bob
>
>
> Nicolas Vervelle wrote:
>
>
>> Are there differences bet
Bob Hanson wrote:
> some of the renderers use
>
> atom.getScreenX()
>
> and some use
>
> atom.screenX
>
> They are the same; Atom.getScreenX() simply returns screenX
>
> Q: would it be reasonable to just get rid of "getScreenX()"? I
> understand that generally one wants to expose methods like th
With the last update, there are 11 warnings in the readers.
I don't know if it is related, but there's also an error in the
XmlReader when running the JUnit tests :
ERROR IN XmlReader.parseReaderXML: null
org.jmol.adapter.smarter.AtomSetCollectionReader - 244 - setUnitCellItem
org.jmol.adapter.sm
Egon Willighagen wrote:
> On Monday 11 September 2006 20:00, Nicolas Vervelle wrote:
>
>> With the last update, there are 11 warnings in the readers.
>>
>
> The following CML files are failing, but, as far as I can see, correct CML:
>
> nsc244.cml
> ns
Bob Hanson wrote:
> So as soon as people are satisfied that the CML and RES readers are
> doing what they are supposed to do, I think we are ready. The
> documentation is up to date; I've been updating it as I've modified.
>
Ok to make a prerelease.
What version would that be ? (10.9.xx)
P
Hi again,
there are still some problems with the readers (and some that weren't
here yesterday).
When running the tests, the CML, Gaussian and MolPro tests fail (MolPro
was working before).
Error: ERROR IN XmlReader.parseReaderXML - java.lang.NullPointerException
Error: ERROR IN XmlReader.parse
The last two problems with Jmol-datafiles:
Error: ..\Jmol-datafiles\cml\nsc244a.cml -
Error: ERROR IN XmlReader.parseReaderXML - org.xml.sax.SAXParseException
- The element type "molecule" must be terminated by the matching end-tag
"".
Error: ..\Jmol-datafiles\gamess\substrate.log -
Error: java
Hi,
when building the full distribution of Jmol from branches/v10_9/, there
are a lot of errors on the user guide.
[java] Error: no ID for constraint linkend: setspin.
[java] XRef to nonexistent id: setspin
Egon, I think you fixed it on the trunk/
Could you fix it also on v10_9 ?
Nico
Bob Hanson wrote:
> jmol application: Clicking on "Help"? or "what's new" ?
>
> I get a not found error.
>
Don't worry about this one.
I just tried it :
- when run from Eclipse, I get the same error
- when built for distribution, it works
So, it should with an official release
Nico
le.
Nico
>
> Nicolas Vervelle wrote:
>
>
>> Bob Hanson wrote:
>>
>>
>>
>>> jmol application: Clicking on "Help"? or "what's new" ?
>>>
>>> I get a not found error.
>>>
>>>
Bob Hanson wrote:
> Bob Hanson wrote:
>
>
>> I think this in the category of file that Egon thinks is old enough to
>> just ignore.
>> Nicolas Vervelle wrote:
>>
>>
>>
>>
>>> The last two problems with Jmol-datafiles:
>>
>> The problem is still here. I just changed the JUnit test to get more
>> details. Here's the call stack
>> (if you want to run the test yourself, select TestSmaterJmolAdapter and
>> Run As -> JUnit test)
>>
>> Error: [..\Jmol-datafiles\gamess\substrate.log]
>> java.lang.ArrayIndexOutOfBoundsE
Hi all,
I am starting to move svn branches to make Bob's branch the new trunk.
While I am doing this, please don't modify things on your end, or it
will require some work afterwards.
This concerns Jmol/ and Jmol-datafiles/
I am doing the following :
- moving trunk/ to branches/v10_3/
- moving br
t click on Jmol
- select Team / Switch
- in the To URL field, replace
https://svn.sourceforge.net/svnroot/jmol/branches/v10_9/Jmol with
https://svn.sourceforge.net/svnroot/jmol/trunk/Jmol
- next update will work properly and should be small.
Do the same if needed for Jmol-datafiles/
Nico
Nicolas
A little update of the wiki ?
Egon Willighagen wrote:
> Hi all,
>
> Jmol and the CDK got mentioned in a Nature Reviews Drug Discovery paper:
>
> Details at:
>
> http://chem-bla-ics.blogspot.com/2006/09/jmol-and-cdk-add-powerful-chemical.html
>
> Egon
>
>
---
Hi René,
I see no errors like this with my own Eclipse.
1 or 2 hours ago, I moved a lot of things between different branches in
Subversion. So, I am not sure which version you got.
In my version, I don't even see cloneAtom().
Nico
René Kanters wrote:
> Hi,
>
> I just synchronized and did a c
gt; my package explorer, which only updated the file Bob was working on a
> minute or so ago :-).
> Is there an easy way to completely start fresh?
>
> René
>
> On Sep 13, 2006, at 5:40 PM, Nicolas Vervelle wrote:
>
>> Hi René,
>>
>>
>> I see no erro
Angel Herraez wrote:
> Bob Hanson wrote:
>
> > Angel, how about setting up something on that home page like you did
> > where you click on an image and it loads the applet into that div? I'm
> > tired of waiting for the applet to load just so I can click on a link
> > from that page. It just s
Hi,
anyone knows where it has been downloaded and which version it is ?
I'd like to update it to a newer version.
Nico
-
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with
Bob Hanson wrote:
> Just now I was running the application under Eclipse and noticed that
> well after I had loaded 1crn.pdb I couldn't delete it due to an access
> violation. I added
>
> bufferedReader.close();
>
>
> to the end of the process in Adapter.Smarter.Resolver.resolve
>
> and, su
Should we update the itext library (PDF generator) from 0.94 to 1.4.5 ?
-
Using Tomcat but need to do more? Need to support web services, security?
Get stuff done quickly with pre-integrated technology to make your job easier
Daniel Leidert wrote:
>> It's pretty outdated (the current "official" release is 1.4 on java.net,
>> and 1.5 is on its way)
>> René Kanters has problems compiling Jmol on his computer due to the
>> presence of a newer version of vecmath on his computer.
>>
>> I thought it would be a good idea t
Daniel Leidert wrote:
> Hello,
>
> I saw, that the current trunk/Jmol tree contains a lot of stuff, that is
> IMO unrelated to build Jmol - e.g. the presentations, screensaver and
> other stuff. Please check, which data is necessary for the Jmol source
> and - if you agree - move the rest into se
Ok, I'm doing it: moving presentation and script_documentation to
Jmol-documentation
Bob Hanson wrote:
> Feel free to move anything, in my opinion.
>
> Nicolas Vervelle wrote:
>
>
>> Daniel Leidert wrote:
>>
>>
>>
>>> Hello,
>&
Egon Willighagen wrote:
> On Saturday 16 September 2006 16:22, Nicolas Vervelle wrote:
>
>>> What is the license of Java3D 1.4/1.5? I always thought, their license
>>> makes them undistributable, which will make Jmol having problems on
>>> Debian systems.
Egon Willighagen wrote:
>>> Nico, what did you want to change?
>>>
>> I tried the java.net version of vecmath to fix a compilation problem.
>>
>> It seems it wasn't a good idea. I am reverting my changes.
>>
>
> I'm not getting this. What compile fix did you have?
>
René Kanters h
Egon Willighagen wrote:
> On Saturday 16 September 2006 15:46, Nicolas Vervelle wrote:
>
>> Should we update the itext library (PDF generator) from 0.94 to 1.4.5 ?
>>
>
> Let's do that after the 11.0 release.
>
I thought it was better to do it whil
Hi Angel,
Angel Herraez wrote:
> On 15 sept., Bob Hanson wrote on jmol-developers:
>
> > Angel, how about setting up something on that home page like you did
> > where you click on an image and it loads the applet into that div? I'm
> > tired of waiting for the applet to load just so I can clic
Angel Herraez wrote:
> El 18 Sep 2006 a las 7:49, Bob Hanson escribió:
>
>> Nice! Please change:
>> (It will take some time to load.)
>> to
>> (Applet loading may take a few seconds.)
>> "Some time" to me means "forever", with negative connotations :)
>>
>
> Yes, well, some days it does t
Egon Willighagen wrote:
> On Sunday 17 September 2006 11:59, Nicolas Vervelle wrote:
>
>> Egon Willighagen wrote:
>>
>>> On Saturday 16 September 2006 15:46, Nicolas Vervelle wrote:
>>>
>>>> Should we update the
Hi translators for Jmol,
I have updated the .po files so that missing translations are visible.
Feel free to update the translations in your language before 11.0
release (probably in a few weeks)
Nico
-
Take Surveys. Earn
Bob Hanson wrote:
> Nico,
>
I am not a user of the applet, so I can't really answer for the ergonomy
of the applet.
A few answers below.
> Since this interface allows for multiple lines, how about giving two or
> three more lines of space to the lower box?
>
If it's useful, why not
> Is
Bob Hanson wrote:
> Nicolas Vervelle wrote:
>
>
>>
>>
>>
>>> I like the way the applet console works, except I wish [ENTER]
>>> activated Execute. I hate having to move my mouse over there just to
>>> press Execute.
Timothy Driscoll wrote:
> On Sep 18, 2006, at 2:26 PM, Bob Hanson wrote:
>
>
>> Nico,
>>
>> Since this interface allows for multiple lines, how about giving
>> two or
>> three more lines of space to the lower box?
>> Is this multiline capability important? (Maybe it is.)
>> If not, could we
Egon Willighagen wrote:
> On Monday 18 September 2006 22:54, [EMAIL PROTECTED] wrote:
>
>> -#: org/jmol/viewer/PickingManager.java:165
>> -msgid "pick "
>> +#: org/jmol/viewer/PickingManager.java:167
>> +msgid "pick one more atoms in order to spin the model around an axis"
>> msgstr ""
>>
Hi everyone,
I want to fix a problem with the translation mechanism (some texts
appear in both .po files).
For this I need to understand how build.xml finds which classes need to
be compiled for the applet (put in build/applet-classes).
Currently, I am missing something. Can someone give me a c
Hi,
Yesterday, I suggested a few things about what to do with localized
pages not yet updated.
My preference is that localized pages not yet updated should be kept but
they should display a warning about their current status.
I can work on a mechanism to help doing this, but I prefer to have
fe
Bob Hanson wrote:
> I have just committed an upgrade of Jmol that will allow indication and
> selection of isotopes. Since this is a fairly complex upgrade, I thought
> I would describe what I have done. For my own sake and for others, here
> is a rundown of how it works. If you see a flaw, do
Bob Hanson wrote:
> I'm onto it. Why is:
>
>
> ? I don't see any reason to continue checking if any of these fail. Right?
>
Seems you're right ;)
That will speed up the pattern matching algorithm.
Nico
-
Take Surveys. E
Angel Herraez wrote:
Nico, if you can implement this, I think it is an excellent solution.
Hi Angel,
I have almost finished implementing it, and I am going to commit it :)
Are you ready to use it to mark pages as outdated ?
What need to be done:
1.
In Jmol-web/doc/source, an outdate
Bob Hanson wrote:
> Nico: While this could be generallizable, right now we only have a way
> of designating the isotopes "D" and "T" -- no other isotopes have their
> own elemental symbols. If you know of file formats that designate
> isotopes in some reasonable way, say _13C, perhaps, we cou
Hi everyone,
Jmol prerelease 10.9.63 is available for download at
http://www.jmol.org/files/
We want to release 11.0 in a near future, so test as much as you can so
we can fix bugs and deliver and really stable 11.0 :)
What needs to be done still before 11.0 :
- fixing a bug in the internationa
ure what the problem is (I will try to reproduce it)
> Also, did you want to only send that release note to developers? Not users?
>
Oups, my mistake, I am sending it again.
> Bob
>
>
> Nicolas Vervelle wrote:
>
>
>> Hi everyone,
>>
>> Jmol pr
Hi,
I just noticed a bug with the Application Script Console (not tested
with the applet).
I don't know how I got this problem, and I don't manage to reproduce it.
I pressed the Backspace key several times, and managed to delete the
beginning of the line (the $) and the lines before.
From ther
Nicolas Vervelle wrote:
> Hi,
>
> I just noticed a bug with the Application Script Console (not tested
> with the applet).
> I don't know how I got this problem, and I don't manage to reproduce it.
>
It seems that it happens if you select Display / Console in the
Still a problem with the reader.
Bob Hanson wrote:
> I've just committed some rather extensive simplifications to the CIF
> reader. It's now a token reader rather than a line reader -- except for
> the CIF rules regarding # and ;, it should read a CIF file that contains
> no line breaks -- mayb
Hi,
Rajarshi Guha wrote:
> Hi, I have some code that brings up a JmolViewer with a IAtomContainer
> object loaded into it. My code looks like:
>
> JmolViewer viewer = jmolPanel.getViewer();
>
> if (this.molecule != null)
> viewer.openClientFile("", "", this.molecule);
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