There was a post a few days ago asking whether it was
possible to script Jmol to display straight lines
from one 3D point to another 3D point, and a reply asking for what use this
would be. I would find this functionality extremely useful for displaying/undisplaying hydrogen bonds and hydro
Frieda & others on Macs:
Here is some source code and object code to test mouse events.
Runs on any system with java 1.4 or greater
You can run it by saying.
Download it to some directory
bring up a terminal
go to that directory and type the command:
java ShiftButtonBug
Source code is provid
Frieda wrote:
>> None of these produce any change in the molecule for me (Mac, OS X
>> v10.3.9) using the Jmol application, 10.00.22.
>
> As I continued to "play" I started to get occasional, erratic slabbing
> control with the keystrokes. It seemed that if I use
> shift-left drag
> in order to zoo
On Jul 21, 2005, at 7:03 PM, Frieda Reichsman wrote:
On Jul 20, 2005, at 5:53 PM, Miguel wrote:
CTRL-SHIFT-LEFTdrag # control slab
CTRL-SHIFT-LEFTdouble-click-drag # control depth
ALT-CTRL-SHIFT-LEFTdrag # move both slab and depth, maintaining the
thickness of the displayed slice.
None o
On Jul 21, 2005, at 6:56 PM, Miguel wrote:
I think that the slab slider would appear after execution of 'slab on'
:-OOh!! Cool!
But I can also easily imagine a situation in which an author decides
not to have it showing, but I as a user would benefit from slabbing.
That's why I thi
>>> Given what gestures are already in use, I'd suggest ctrl-shift-drag
>>> with the left button for slabbing. (But maybe that's jumping the gun a
>>> bit!)
>>
>> Not bad! But Ctrl-left drag is the Chime way, and it is not used in
>> Jmol (some post says there is incompatibility with Mac OSX).
CTR
On Jul 20, 2005, at 5:53 PM, Miguel wrote:
I have implemented a preliminary implementation of mouse gestures to
control slab/depth.
To distribute this test feature, I have posted prerelease 10.00.22 at
www.jmol.org/files
I need feedback from people who like/use mouse-based slab control to
> On Jul 20, 2005, at 11:56 AM, Miguel wrote:
>>
>> Q: Would you be happier with a vertical slider that appeared inside the
>> JmolApplet window to control slab and depth?
>>
>
> A vertical slider would be fine, in principle more user-friendly than
> mouse gestures, of course.
>
> But will all app
On Jul 20, 2005, at 11:56 AM, Miguel wrote:
Q: Would you be happier with a vertical slider that appeared inside the
JmolApplet window to control slab and depth?
A vertical slider would be fine, in principle more user-friendly than
mouse gestures, of course.
But will all applets have the sl
On Jul 20, 2005, at 12:06 PM, Angel Herraez wrote:
Thanks, Frieda, por taking the time to revise the mouse gestures
Rotate around Z - shift and drag horizontally works with left ("main")
button but not with right ("secondary") button. Can other Mac users
confirm this?
It certainly works in W
> I saw the message about using the Jmol Application and
> have been trying it for the autobond issue. I have tried
> running the script "set autobond off;"
> before loading one of the xyz files and get a message of:
>
> setting:autobond
>
> viewer.setBooleanProperty(autobond,false) - unrecognized
Miguel wrote:
...
testing set picking group and clicking an atom while display
selected is active and selects the clicked amino acid, but because I
used a wireframe 40 display, I couldn't easily notice the atom
highlighting, may be it could be connected with wireframe and spacefill
I still miss PDB altLoc support.
...
Jan, I know that you sent me information on how you believe that altLoc
should be implemented.
However, I was unable to understand what you sent me. I need input from
several different people to decide how this support should be added.
Please J
> On 2005-07-20 (16:39) Miguel wrote:
>
>>>Rotate around Z - shift and drag horizontally works with left (main)
>>>button but not with right (secondary) button. Can other Mac users
>>>confirm this?
>>
>>You are talking about 'shift-right-drag' ... correct?
>>
>>I find it hard to believe that this
Marie posted the question below to jmol-developers
I believe that some of you have worked with tying JCAMP plots to display
in Jmol.
Any suggestions/advice for Marie?
Miguel
Mensaje original
Asunto: [Jmol-developers] questions about CHI
> I also have a very large xyz file
> (http://undergrad-ed.chemistry.ohio-state.edu/jmol-tests/animation.html)
> (1000 atoms and 1000 frames).
I did not even look at this ...
But 1000 atoms * 1000 frames = 1 million atoms. The applet java virtual
machine does not have enough memory for that.
> I
> El 20 Jul 2005 a las 16:05, Miguel escribió:
>> 3. internationalization now includes ES
>
> Miguel, this is working OK now: I downloaded 10.00.22 and the app
> menu is now in Spanish. Some minor parts are still in English, but
> this is likely something about the translation files; I will have a
>> Note: The mouse gestures are only activated if the script command 'slab
>> on' has been previously executed. This is consistent with script
>> commands
>> where 'slab on' must be executed prior to 'slab 75' or 'depth 25'
>>
> This is a very good idea to prevent accidents.
>> The mouse gestures a
On 2005-07-20 (17:53) Miguel wrote:
>I have implemented a preliminary implementation of mouse gestures to
>control slab/depth.
>
>To distribute this test feature, I have posted prerelease 10.00.22
>at
>
>www.jmol.org/files
>
>
>Pesonally, I think that a slider would be better.
>
I hate to me, too
On 2005-07-20 (16:39) Miguel wrote:
>>Rotate around Z - shift and drag horizontally works with left (main)
>>button but not with right (secondary) button. Can other Mac users
>>confirm this?
>
>You are talking about 'shift-right-drag' ... correct?
>
>I find it hard to believe that this does not wo
El 20 Jul 2005 a las 16:05, Miguel escribió:
> 3. internationalization now includes ES
Miguel, this is working OK now: I downloaded 10.00.22 and the app
menu is now in Spanish. Some minor parts are still in English, but
this is likely something about the translation files; I will have a
look at i
Miguel wrote:
I have implemented a preliminary implementation of mouse gestures to
control slab/depth.
To distribute this test feature, I have posted prerelease 10.00.22 at
www.jmol.org/files
I need feedback from people who like/use mouse-based slab control to know
what you think.
I never
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