Re: [ccp4bb] 3D model building without CRT monitor

2008-06-09 Thread Salam Al-Karadaghi
Just a couple of days ago I received e-mail from a French company with the
following content:

we offer professional stereo glasses, fully compatible with all the the
stereo capable software (O, Coot, Xfit, Molmol, Accelrys, Tripos.).

we can provide you with a demo unit for testing purposes if need be.

And we would like to take the opportunity of this mail, to introduce the
brand new LCD product from Nuvision the Perceiva DSD190. This 19''
stereo monitor is delivered with Lightweight passive glasses and is fully
compatible with all stereo ready software.

*Hervé SCHWERTZ*
ZA Les Priaux
07430 VERNOSC
Tel: 04 75 69 00 40
Fax: 04 75 69 00 48
Web : http://www.pixeltech.fr



I hope you find this useful, we will try the glasses to start with,

Salam Al-Karadaghi




-Original Message-
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
PhilEvans
Sent: den 5 juni 2008 23:17
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] 3D model building without CRT monitor

We now have a Planar system, which works very nicely with coot, O ,  
ccp4mg etc. Rather expensive though

Phil Evans

On 2 Jun 2008, at 17:06, Mike Latchem wrote:

 These new TFT monitors do seem like a really good idea, but, it is
 well worth doing in depth research as most of the accessible (Cheap)
 ones designed for gaming currently only operate with directX. As I
 understand it there are plans to make these work with openGL as well  
 as
 directX so they should work with programs like coot etc. Just be  
 careful
 and confirm with the people supplying the TFT that it will work with
 your software package of choice.

 P.S. a colleague of mine who is interested in tomography suggested the
 planar TFTs work well (they are also very expensive and bulky) - but  
 be
 sure to confirm they work with your software of choice before paying  
 for
 one

 http://www.planar3d.com/

 Regards

 Mike


 On Mon, 2008-06-02 at 11:51 -0400, Jim Fairman wrote:
 Hello all,

 There is a new company around that makes a 3D capable 22 inch flat
 screen LCD monitor (http://www.iz3d.com) capable of a maximum
 resolution of 1680x1050.  It is originally designed for the purpose  
 of
 playing video games in 3D, but looks promising for ridding ourselves
 of the huge bulky CRTs.

 Cheers

 On Mon, Jun 2, 2008 at 11:08 AM, Warren DeLano [EMAIL PROTECTED]
 wrote:

For used-stereo-3D-capable-CRT seekers, our stereo 3D page may
be of some use.  A number of target monitors are listed.

http://pymol.sourceforge.net/stereo3d.html

-Original Message-
From: CCP4 bulletin board on behalf of Krojer,Tobias
Sent: Mon 6/2/2008 5:24 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] 3D model building without CRT monitor

Dear all,

recently some of our CRT monitors broke down and we realized
that these
monitors are no longer produced. However, we would still like
to
continue model building in 3D which is apparently not possible
with
current TFT displays. Beside the possibility of getting old
CRT monitors
at ebay, I was wondering how other groups solved this problem.

Thank you very much for suggestions!
best wishes,
Tobias




Tobias Krojer, PhD
IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153








 -- 
 Jim Fairman
 Graduate Research Assistant
 Department of Biochemistry, Cellular, and Molecular Biology (BCMB)
 University of Tennessee -- Knoxville
 216-368-3337 [EMAIL PROTECTED] [EMAIL PROTECTED]
 DIVFONT size=1 color=grayThis e-mail and any attachments may  
 contain confidential, copyright and or privileged material, and are  
 for the use of the intended addressee only. If you are not the  
 intended addressee or an authorised recipient of the addressee  
 please notify us of receipt by returning the e-mail and do not use,  
 copy, retain, distribute or disclose the information in or attached  
 to the e-mail.
 Any opinions expressed within this e-mail are those of the  
 individual and not necessarily of Diamond Light Source Ltd.
 Diamond Light Source Ltd. cannot guarantee that this e-mail or any  
 attachments are free from viruses and we cannot accept liability for  
 any damage which you may sustain as a result of software viruses  
 which may be transmitted in or with the message.
 Diamond Light Source Limited (company no. 4375679). Registered in  
 England and Wales with its registered office at Diamond House,  
 Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11  
 0DE, United Kingdom
 /FONT/DIV


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-06 Thread Jeffrey Wilson

On Jun 2, 2008, at 11:51 AM, Jim Fairman wrote:
There is a new company around that makes a 3D capable 22 inch flat  
screen LCD monitor (http://www.iz3d.com) capable of a maximum  
resolution of 1680x1050.  It is originally designed for the purpose  
of playing video games in 3D, but looks promising for ridding  
ourselves of the huge bulky CRTs.


I have looked at the specs for this iz3d monitor and the Zalman  
ZM-220W (http://www.zalman.co.kr/eng/product/Product_read.asp? 
Idx=219).  Both are attractive since they are passive stereo.  Under  
linux, I am pretty sure neither of these will work, at least not with  
a Nvidia card.  The iz3d uses a non-standard front-back 3D imaging,  
and you need their special drivers only available on Windoz.  The  
Zalman is a bit more promising since it does left-right, but the  
monitor uses interlacing to present the left  right images.  The  
nvidia xorg driver does have two interlaced stereo modes for quadro  
cards, but who knows if either of these would work.


On Jun 5, 2008, at 5:57 PM, James M. Vergis wrote:
Has anyone tried a 3D DLP-TV?  They have the input for a  
stereographics
emitter.  Probably too big for a desktop but at 50-72 they would  
work in a
conference room.  They range in price from $1900-3500.  Here is the  
link for
the SAMSUNG website http://product.samsung.com/dlp3d/index.html.   
Mitsubishi

also sells 3D TVs... I'm not sure about other manufacturers.



I was at the National Association of Broadcasters meeting in Las Vegas  
this year (don't ask why) and I saw demonstrations of a lot of 3D  
television technology.  Specifically, TDVision Systems, Inc. was  
demoing one of these Samsung 3D DLPs with a Star Wars III clip in HD.   
The 3D effect was pretty nice.  As James mentioned, they were using an  
emitter  shutter glass setup (which is an add-on product for a few  
extra $100).  The reason that this is possible is the 120Hz technology  
now available in these HDTVs.  I am very curious if the new 120Hz LCD  
HDTVs could also be used for stereo purposes.  I am just not sure if  
they would accept and respect a 120Hz signal over VGA/DVI input.  A  
50 HDTV in a conference room doing 3D presentations would be pretty  
cool.


This fall TDVision is also supposed to release a HD head mount display  
that can do 3D at 1280x768.  This is significantly better than the  
800x600 resolution of most HDMs.


I do have to agree that 3D is a bit more of a novelty than actually  
being useful.  Realspace refinement in coot has reduced the  
effectiveness of 3d stereo.  That being said, if drivers are made for  
that ZM-220W or if 120Hz LCDs come to the desktop market, I will  
probably start using the stereo technology again.


That's my 2.1 cents adjusted for inflation.

Jeff

Jeffrey Wilson, Ph.D.
University of Cincinnati College of Medicine
Molecular Genetics Department
231 Albert Sabin Way
MSB 3109A
Cincinnati, OH 45267-0524
(513) 558-4651



Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread Vangelis Christodoulou

Philips is offering an interesting solution:
http://www.business-sites.philips.com/3dsolutions/products/3dscreens/index.html

Vangelis

On Jun 2, 2008, at 2:10 PM, Krojer,Tobias wrote:


Dear all,

recently some of our CRT monitors broke down and we realized that  
these monitors are no longer produced. However, we would still like  
to continue model building in 3D which is apparently not possible  
with current TFT displays. Beside the possibility of getting old CRT  
monitors at ebay, I was wondering how other groups solved this  
problem.


Thank you very much for suggestions!
best wishes,
Tobias




Tobias Krojer, PhD
IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153




Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread Dima Klenchin

Vangelis Christodoulou wrote:

Philips is offering an interesting solution:
http://www.business-sites.philips.com/3dsolutions/products/3dscreens/index.htmlhttp://www.business-sites.philips.com/3dsolutions/products/3dscreens/index.html


Interesting!  Their PDF says it works with OpenGL:
http://www.business-sites.philips.com/assets/Downloadablefile//2006-05-30-Technology-backgrounder-13560.pdf 



Does it mean it will work in Coot as is?

Dima


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread Juergen Bosch

Dima Klenchin wrote:


Vangelis Christodoulou wrote:


Philips is offering an interesting solution:
http://www.business-sites.philips.com/3dsolutions/products/3dscreens/index.htmlhttp://www.business-sites.philips.com/3dsolutions/products/3dscreens/index.html 




Interesting!  Their PDF says it works with OpenGL:
http://www.business-sites.philips.com/assets/Downloadablefile//2006-05-30-Technology-backgrounder-13560.pdf 



Does it mean it will work in Coot as is?

Dima


If you don't mind the 12K price tag, maybe.

Juergen

--
Jürgen Bosch
University of Washington
Dept. of Biochemistry, K-426
1705 NE Pacific Street
Seattle, WA 98195
Box 357742
Phone:   +1-206-616-4510
FAX: +1-206-685-7002
Web: http://faculty.washington.edu/jbosch


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread Vangelis Christodoulou
There is a 20-inch (20-3D2W04) display that costs around $6000. For  
$13000 you get a 42-inch, so I guess the 52-inch that was introduced  
today will cost  a lot.


Vangelis

On Jun 5, 2008, at 7:30 PM, Juergen Bosch wrote:


Interesting!  Their PDF says it works with OpenGL:
http://www.business-sites.philips.com/assets/Downloadablefile//2006-05-30-Technology-backgrounder-13560.pdf

Does it mean it will work in Coot as is?

Dima


If you don't mind the 12K price tag, maybe.

Juergen

--
Jürgen Bosch
University of Washington
Dept. of Biochemistry, K-426
1705 NE Pacific Street
Seattle, WA 98195
Box 357742
Phone:   +1-206-616-4510
FAX: +1-206-685-7002
Web: http://faculty.washington.edu/jbosch


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread PhilEvans
We now have a Planar system, which works very nicely with coot, O ,  
ccp4mg etc. Rather expensive though


Phil Evans

On 2 Jun 2008, at 17:06, Mike Latchem wrote:


These new TFT monitors do seem like a really good idea, but, it is
well worth doing in depth research as most of the accessible (Cheap)
ones designed for gaming currently only operate with directX. As I
understand it there are plans to make these work with openGL as well  
as
directX so they should work with programs like coot etc. Just be  
careful

and confirm with the people supplying the TFT that it will work with
your software package of choice.

P.S. a colleague of mine who is interested in tomography suggested the
planar TFTs work well (they are also very expensive and bulky) - but  
be
sure to confirm they work with your software of choice before paying  
for

one

http://www.planar3d.com/

Regards

Mike


On Mon, 2008-06-02 at 11:51 -0400, Jim Fairman wrote:

Hello all,

There is a new company around that makes a 3D capable 22 inch flat
screen LCD monitor (http://www.iz3d.com) capable of a maximum
resolution of 1680x1050.  It is originally designed for the purpose  
of

playing video games in 3D, but looks promising for ridding ourselves
of the huge bulky CRTs.

Cheers

On Mon, Jun 2, 2008 at 11:08 AM, Warren DeLano [EMAIL PROTECTED]
wrote:

   For used-stereo-3D-capable-CRT seekers, our stereo 3D page may
   be of some use.  A number of target monitors are listed.

   http://pymol.sourceforge.net/stereo3d.html

   -Original Message-
   From: CCP4 bulletin board on behalf of Krojer,Tobias
   Sent: Mon 6/2/2008 5:24 AM
   To: CCP4BB@JISCMAIL.AC.UK
   Subject: [ccp4bb] 3D model building without CRT monitor

   Dear all,

   recently some of our CRT monitors broke down and we realized
   that these
   monitors are no longer produced. However, we would still like
   to
   continue model building in 3D which is apparently not possible
   with
   current TFT displays. Beside the possibility of getting old
   CRT monitors
   at ebay, I was wondering how other groups solved this problem.

   Thank you very much for suggestions!
   best wishes,
   Tobias




   Tobias Krojer, PhD
   IMP (Research Institute of Molecular Pathology)
   Dr. Bohr-Gasse 7
   1030 Vienna
   Austria
   Tel.: +43-1-797303358
   Fax.: +43-1-7987153








--
Jim Fairman
Graduate Research Assistant
Department of Biochemistry, Cellular, and Molecular Biology (BCMB)
University of Tennessee -- Knoxville
216-368-3337 [EMAIL PROTECTED] [EMAIL PROTECTED]
DIVFONT size=1 color=grayThis e-mail and any attachments may  
contain confidential, copyright and or privileged material, and are  
for the use of the intended addressee only. If you are not the  
intended addressee or an authorised recipient of the addressee  
please notify us of receipt by returning the e-mail and do not use,  
copy, retain, distribute or disclose the information in or attached  
to the e-mail.
Any opinions expressed within this e-mail are those of the  
individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any  
attachments are free from viruses and we cannot accept liability for  
any damage which you may sustain as a result of software viruses  
which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in  
England and Wales with its registered office at Diamond House,  
Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11  
0DE, United Kingdom

/FONT/DIV


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-05 Thread James M. Vergis
Has anyone tried a 3D DLP-TV?  They have the input for a stereographics
emitter.  Probably too big for a desktop but at 50-72 they would work in a
conference room.  They range in price from $1900-3500.  Here is the link for
the SAMSUNG website http://product.samsung.com/dlp3d/index.html.  Mitsubishi
also sells 3D TVs... I'm not sure about other manufacturers.

James


James M. Vergis, Ph.D.
University of Virginia Molecular Physiology and Biological Physics
MKWEINR 438 Jordan Hall
1340 Jefferson Park Ave
Charlottesville, VA 22908-0736
phone: 434-243-2730   FAX: 434-982-1616
[EMAIL PROTECTED]



-Original Message-
From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of
Vangelis Christodoulou
Sent: Thursday, June 05, 2008 2:02 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] 3D model building without CRT monitor

There is a 20-inch (20-3D2W04) display that costs around $6000. For  
$13000 you get a 42-inch, so I guess the 52-inch that was introduced  
today will cost  a lot.

Vangelis

On Jun 5, 2008, at 7:30 PM, Juergen Bosch wrote:

 Interesting!  Their PDF says it works with OpenGL:

http://www.business-sites.philips.com/assets/Downloadablefile//2006-05-30-Te
chnology-backgrounder-13560.pdf

 Does it mean it will work in Coot as is?

 Dima

 If you don't mind the 12K price tag, maybe.

 Juergen

 -- 
 Jürgen Bosch
 University of Washington
 Dept. of Biochemistry, K-426
 1705 NE Pacific Street
 Seattle, WA 98195
 Box 357742
 Phone: +1-206-616-4510
 FAX:   +1-206-685-7002
 Web: http://faculty.washington.edu/jbosch


[ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread Krojer,Tobias
Dear all,
 
recently some of our CRT monitors broke down and we realized that these
monitors are no longer produced. However, we would still like to
continue model building in 3D which is apparently not possible with
current TFT displays. Beside the possibility of getting old CRT monitors
at ebay, I was wondering how other groups solved this problem.
 
Thank you very much for suggestions!
best wishes,
Tobias
 
 
 
 
Tobias Krojer, PhD
IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread Dirk Kostrewa

Hi Tobias,

we bought good, refurbished 22'' CRT monitors at eBay. Make sure to  
get monitors that have a horizontal refresh rate of about 130 kHz (or  
even higher), since this is usually the bottleneck. You need a  
horizontal refresh rate of ~123.5 kHz to display a stereo image with  
1280x960 pixels at 2x60Hz.


Good luck,

Dirk Kostrewa.

Am 02.06.2008 um 14:10 schrieb Krojer,Tobias:


Dear all,

recently some of our CRT monitors broke down and we realized that  
these monitors are no longer produced. However, we would still like  
to continue model building in 3D which is apparently not possible  
with current TFT displays. Beside the possibility of getting old CRT  
monitors at ebay, I was wondering how other groups solved this  
problem.


Thank you very much for suggestions!
best wishes,
Tobias




Tobias Krojer, PhD
IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153



***
Dirk Kostrewa
Gene Center, A 5.07
Ludwig-Maximilians-University
Feodor-Lynen-Str. 25
81377 Munich
Germany
Phone:  +49-89-2180-76845
Fax:+49-89-2180-76999
E-mail: [EMAIL PROTECTED]
***




Re: [ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread David Roberts
Title: Message




I've had good luck with refurbished monitors off the web. Just do a
google search for a sun monitor (for example) and it should come up.
Otherwise, go to pricewatch.com and search for crt monitors there.
They may have some external case dents, but the monitors are usually
crisp and last being on for at least 2-3 years. They are all
refurbished monitors. Their cost is generally $30 for the monitor (or
something ridiculously cheap) and then around $100 to ship
(unfortunately). Not a bad overall price if you want stereo.

I will say, I teach a class on crystallography to undergrad students.
In the past I had SGI's, with dial boxes and stereo. When I switched
to linux, I changed to coot, and away went the dial boxes (but I do
still do stereo). In the past, students only used stereo and really
liked the dial boxes. Now, with the graphics of coot and it's fitting
algorithms, the real need for stereo was nothing more than an oddity,
and so they did use stereo at times but it wasn't used as much. I do
think stereo has a great purpose, especially in the education part and
the final evaluation, but I'm not sure it's needed as much for the
actual model building.

Cheers

Dave



Krojer,Tobias wrote:

  
  
  
  Dear all,
  
  recently some of our CRT monitors
broke down and we realized that these monitors are no longer produced.
However, we would still like
to continue model building in 3D which is apparently not possible with
current TFT displays. Beside the possibility of getting old CRT monitors at ebay,
I was wondering how other groups solved this problem.
  
  Thank you very much for
suggestions!
  best
wishes,
  Tobias
  
  
  
  
  
  Tobias Krojer, PhD
  IMP (Research Institute
of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
  Fax.: +43-1-7987153
  





Re: [ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread Warren DeLano

For used-stereo-3D-capable-CRT seekers, our stereo 3D page may be of some use.  
A number of target monitors are listed.

http://pymol.sourceforge.net/stereo3d.html

-Original Message-
From: CCP4 bulletin board on behalf of Krojer,Tobias
Sent: Mon 6/2/2008 5:24 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] 3D model building without CRT monitor
 
Dear all,
 
recently some of our CRT monitors broke down and we realized that these
monitors are no longer produced. However, we would still like to
continue model building in 3D which is apparently not possible with
current TFT displays. Beside the possibility of getting old CRT monitors
at ebay, I was wondering how other groups solved this problem.
 
Thank you very much for suggestions!
best wishes,
Tobias
 
 
 
 
Tobias Krojer, PhD
IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153





Re: [ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread Jim Fairman
Hello all,

There is a new company around that makes a 3D capable 22 inch flat screen
LCD monitor (http://www.iz3d.com) capable of a maximum resolution of
1680x1050.  It is originally designed for the purpose of playing video games
in 3D, but looks promising for ridding ourselves of the huge bulky CRTs.

Cheers

On Mon, Jun 2, 2008 at 11:08 AM, Warren DeLano [EMAIL PROTECTED] wrote:


 For used-stereo-3D-capable-CRT seekers, our stereo 3D page may be of some
 use.  A number of target monitors are listed.

 http://pymol.sourceforge.net/stereo3d.html

 -Original Message-
 From: CCP4 bulletin board on behalf of Krojer,Tobias
 Sent: Mon 6/2/2008 5:24 AM
 To: CCP4BB@JISCMAIL.AC.UK
 Subject: [ccp4bb] 3D model building without CRT monitor

 Dear all,

 recently some of our CRT monitors broke down and we realized that these
 monitors are no longer produced. However, we would still like to
 continue model building in 3D which is apparently not possible with
 current TFT displays. Beside the possibility of getting old CRT monitors
 at ebay, I was wondering how other groups solved this problem.

 Thank you very much for suggestions!
 best wishes,
 Tobias




 Tobias Krojer, PhD
 IMP (Research Institute of Molecular Pathology)
 Dr. Bohr-Gasse 7
 1030 Vienna
 Austria
 Tel.: +43-1-797303358
 Fax.: +43-1-7987153





-- 
Jim Fairman
Graduate Research Assistant
Department of Biochemistry, Cellular, and Molecular Biology (BCMB)
University of Tennessee -- Knoxville
216-368-3337 [EMAIL PROTECTED] [EMAIL PROTECTED]


Re: [ccp4bb] 3D model building without CRT monitor

2008-06-02 Thread Nadir T. Mrabet

Hi,
I bought myself a brand-new Viewsonic P227f crt less than a year ago (in 
France).

So I suspected this item to be still available. But no longer!.
I however found something that might still be of interest to you 
(http://www.viewsonic.com/products/crtmonitors/graphicseries/g90fB/).

Seems to be the one and only crt from Viewsonic (but only 19).
Cheers,
Nadir

--

Pr. Nadir T. Mrabet
   Cellular  Molecular Biochemistry
   INSERM U-724
   Nancy University, School of Medicine
   9, Avenue de la Foret de Haye, BP 184
   54505 Vandoeuvre-les-Nancy Cedex
   France
   Phone: +33 (0)3.83.68.32.73
   Fax:   +33 (0)3.83.68.32.79
   E-mail: [EMAIL PROTECTED]
   Cell.: +33 (0)6.11.35.69.09



Krojer,Tobias wrote:

Dear all,
 
recently some of our CRT monitors broke down and we realized that 
these monitors are no longer produced. However, we would still like to 
continue model building in 3D which is apparently not possible with 
current TFT displays. Beside the possibility of getting old CRT 
monitors at ebay, I was wondering how other groups solved this problem.
 
Thank you very much for suggestions!

best wishes,
Tobias
 
 
 
 
Tobias Krojer, PhD

IMP (Research Institute of Molecular Pathology)
Dr. Bohr-Gasse 7
1030 Vienna
Austria
Tel.: +43-1-797303358
Fax.: +43-1-7987153