Re: [ECOLOG-L] Ecology Centralized organization of the discipline driving research or ?

2013-07-03 Thread Mike Sears
So the thing is, there's this whole body of literature that each of us follows 
given our interests and/or sub-discipline, in addition to a core knowledge that 
we all share at some level. There most certainly is discipline in ecology, but 
you have to be engaged (as with anything) to get it. To say that the field of 
ecology is haphazard makes me think that you are simply trolling.

Mike

--

Michael Sears, Ph.D.
Department of Biological Sciences
Clemson University
132 Long Hall
Clemson, SC 29630

phone: 864-506-5174
fax: 864-656-0435

Sears Lab: http://www.thermalecology.org
Ecology at Clemson: http://www.clemson.edu/cafls/ecology

On Jul 3, 2013, at 10:15 PM, Wayne Tyson landr...@cox.net wrote:

 Honorable Forum: 
 
 Would someone inform me about the state of ecology as a discipline? 
 
 I am particularly interested if there is any organized approach and the kind 
 of disciplined sequencing of research efforts, and the degree to which such 
 discipline might be lacking in the field of ecology. 
 
 I'll appreciate any comments in this whole area, as my present perspective is 
 not well enough informed. For some reason I get the impression (I hope quite 
 incorrect) that the organization of the study of ecology is, well, possibly 
 even haphazard and lacking in clear goals, continuity, and focus, so chopped 
 up into specialties that frustrate coherence and integration of those 
 sub-disciplines. 
 
 I'd like to get a better handle on the Big Picture. 
 
 WT


[ECOLOG-L] Job Announcement: Assistant Professor in Ecology at Bryn Mawr College

2011-08-18 Thread Mike Sears
The Department of Biology at Bryn Mawr College invites applications for a 
full-time, tenure-track position in Ecology at the rank of Assistant Professor 
to begin July 1, 2012. We are searching for an individual who will thrive in an
environment that combines teaching and research. We are particularly interested 
in candidates who use experimental approaches as a core of their research at 
any level of ecological organization. The successful candidate is expected to 
teach at all levels of the curriculum, establish an externally funded research 
program that provides rigorous collaborative research projects for 
undergraduates, and participate in the College’s interdisciplinary program in 
Environmental Studies. Teaching responsibilities include courses in ecology and 
in the candidate’s area of expertise, as well as involvement in the team-taught 
introductory biology sequence. A doctorate and at least one year of 
postdoctoral research experience are required. Submit a cover letter, 
curriculum vitae, teaching philosophy and research statement as a single pdf 
document by October 7, 2011 to Ecologist Search Committee c/o 
jjac...@brynmawr.edu. In addition arrange for three letters of recommendation 
to be sent via email.

Located in suburban Philadelphia, Bryn Mawr College is a highly selective 
liberal arts college for women who share an intense commitment to intellectual 
inquiry, an independent and purposeful vision of their lives, and a desire to 
make meaningful contributions to the world. Bryn Mawr comprises an 
undergraduate college with 1,300 students, as well as coeducational graduate 
schools in social work and in some humanities and sciences.  The College 
supports faculty excellence in both research and teaching, and has strong 
consortial relationships with Haverford College, Swarthmore College, and the 
University of Pennsylvania.  Bryn Mawr College is an equal-opportunity 
employer; minority candidates and women are especially encouraged to apply.
Feel free to contact me for any further information.
Cheers,
Mike
Michael W. Sears, Ph.D.
Assistant Professor
Program in Environmental Studies
Department of Biology
Bryn Mawr College
Bryn Mawr, PA 19010

office: 610-526-7576
lab: 610-526-7577
cell: 484-535-2116
web: http://www.thermalecology.com


Re: [ECOLOG-L] a good, free R text editor for mac

2010-09-23 Thread Mike Sears
 Hi Emma,

BBEdit, Text Wrangler, or TextMate are all decent choices for editing 
text/code on the Mac. R highlighting (as well as for many other languages) is 
available for all of these editors.

Cheers,

Mike


Michael W. Sears, Ph.D.
Assistant Professor of Biology
Program in Environmental Studies
Bryn Mawr College
Bryn Mawr, PA 19010

http://www.thermal ecology.org

On Wednesday, September 22, 2010 10:05:28 pm Emma L Aronson wrote:
 Hey Ecolog,
 I am looking for a great text editor for R for Mac. I hear that features
 like split screens and highlighting are particularly nice. I would be
 willing to pay for a good one, as I think it should last me several years.
 However, if someone knows of a free or a low-cost editor, I would be very
 appreciative.
 
 Thanks!
 Emma Aronson


Re: [ECOLOG-L] Graphing Software for Macs

2010-09-20 Thread Mike Sears

Of course, I expect that you'll get 99 emails telling you the virtues of R (!), 
so I won't bother being the 100th (though I could). That said, one program that 
seems fairly good is DataGraph (http://www.visualdatatools.com/DataGraph/), and 
it's not too pricey. I've also tried Abel (http://www.gigawiz.com/Aabel.html), 
which appears feature rich, but is not as straight forward as SigmaPlot...and 
will set you back nearly as much as Sigma Plot, if you like paying for software 
(which I don't).

Cheers,

Mike


Michael W. Sears, Ph.D.
Assistant Professor
Program in Environmental Studies
Department of Biology
Bryn Mawr College
Bryn Mawr, PA 19010

office: 610-526-7576
lab: 610-526-7577
cell: 484-535-2116
web: http://www.thermalecology.com




On Sep 19, 2010, at 06:32 PM, Murphy, Cheryl Ann murp...@ku.edu wrote:

Hello,

I was curious if anyone has found good graphing software that is compatible 
with macs - I'm looking to have graphs that would be suitable for publications. 
I've used Sigma Plot in the past but it is only windows-based.

Thanks!
Cheryl Murphy




Ph.D. Candidate
Dept. Ecology and Evolutionary Biology
University of Kansas
murp...@ku.edu
423-208-1165


[ECOLOG-L] Tenure track position in Environmental Biology

2010-09-11 Thread Mike Sears

Tenure-Track Search in Environmental Biology

Biology/Environmental Biology: Haverford College (http://www.haverford.edu) 
seeks
outstanding candidates for a tenure-track appointment in Environmental Biology 
at the assistant
or associate professor level, to begin Fall 2011. Applicants using molecular 
and/or
computational approaches to study fundamental questions in ecology, 
biodiversity, and/or plant
biology are encouraged to apply. The successful candidate will contribute to a 
vibrant curriculum
in cell and molecular biology, participate in an interdisciplinary 
Environmental Studies program
that engages colleagues at Bryn Mawr and Swarthmore Colleges, and establish a 
vigorous,
externally funded research program involving undergraduate students. 
Post-doctoral experience
required. Apply by submitting a single PDF file containing cover letter, 
curriculum vitae,
statements of research plans and teaching interests to 
hc-environ...@haverford.edu. Three
formal recommendations, submitted separately by referees, are also required and 
should be sent
to Merleen Macdonald, Haverford College, 370 Lancaster Avenue, Haverford, 
Pennsylvania
19041. Review of completed applications begins October 1st. Specific questions 
may be
directed to Karl Johnson, Chair, Biology Department, 610-896-1306. Haverford is 
an Equal
Opportunity, Affirmative Action employer, committed to excellence through 
diversity, and
strongly encourages applications and nominations of persons of color, women, 
and members of
other under-represented groups.

Michael W. Sears, Ph.D.
Assistant Professor
Program in Environmental Studies
Department of Biology
Bryn Mawr College
Bryn Mawr, PA 19010

office: 610-526-7576
lab: 610-526-7577
cell: 484-535-2116
web: http://www.thermalecology.com


Re: [ECOLOG-L] Statistic program question

2009-06-02 Thread Mike Sears
 I want to sit down and learn R.
 Where is the best place to start?

At your computer! ;)

If you are looking for a book, good ones are Michael Crawley's Statistics: An 
Introduction Using R or Peter Dalgaard's Introductory Statistics with R. 

Crawley is a biologist, and his book might be a little more accessible to 
ecologists. He has also written a much more comprehensive book on R, The R 
Book, which is useful.

Cheers,

Mike


 Malcolm

 On Tue, Jun 2, 2009 at 4:58 PM, Gavin Simpson gavin.simp...@ucl.ac.uk 
wrote:
  On Tue, 2009-06-02 at 14:15 -0700, AdRiAnA HuMaNeS wrote:
  Dear Listers:
  I am writing to ask if anyone knows a statistical program besides
  PERMANOVA= that can do ANOVAS of mixed designs with four factors (two
  orthogonals and= two nested) and unbalanced data,
 
  Best Regards
 
  Adriana Humanes
 
  Function adonis() in the vegan package for R can fit this type of model.
 
  You can find out more here:
 
  http://cran.r-project.org/package=vegan
 
  HTH,
 
  G
 
  --
  
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%
   Dr. Gavin Simpson [t] +44 (0)20 7679 0522
   ECRC, UCL Geography,  [f] +44 (0)20 7679 0565
   Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk
   Gower Street, London  [w] http://www.ucl.ac.uk/~ucfagls/
   UK. WC1E 6BT. [w] http://www.freshwaters.org.uk
  
%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

-- 
Michael W. Sears, Ph.D.
Department of Biology 
Bryn Mawr College
101 N. Merion Ave 
Bryn Mawr, PA 19010 

http://www.brynmawr.edu/biology
http://www.zoology.siu.edu/sears/mike_sears_home.html


[ECOLOG-L] REU position, thermoregulation

2009-03-26 Thread Mike Sears
Please forward to potentially interested undergrads:

A Research Experience for Undergraduates (REU) position is available in Mike 
Sears's Ecology Lab at Southern Illinois University/Bryn Mawr College for the 
summer of 2009. Projects for this position will be related to ongoing 
experimental mesocosm studies of behavioral thermoregulation in lizards. The 
participant would gain valuable experience in both the laboratory and field. 
This experience could potentially lay the groundwork for a senior thesis as 
well as prepare students for future graduate careers.

Our work takes place at the Sevilleta Long Term Ecological Research field 
station (http://sev.lternet.edu/) in New Mexico. As a part of this experience, 
participants will have the opportunity to interact with other REUs, 
researchers, and graduate students from many different universities. Further, 
this participant will be a part of a dynamic group of researchers from the 
labs of Mike Sears (http://www.zoology.siu.edu/sears/mike_sears_home.html) and 
Mike Angilletta (http://www.indstate.edu/biology/faculty/angilletta.htm). 

Housing and a stipend will be provided as well as travel costs to the field 
station. It should be noted that, because of the location and timing of this 
work, participants should be prepared to work for some long days under hot dry 
conditions.

Eligible candidates must be currently enrolled undergraduates, who are U.S. 
citizens or permanent residents. Students from under-represented groups as 
well as from small colleges are encouraged to apply. We are especially 
interested in students who plan to pursue graduate studies in ecology, 
behavior, or evolution. Please send a letter of interest, current CV or 
resume, and the name of a reference via email to Mike Sears 
(mse...@brynmawr.edu). Also feel free to contact Mike Sears 
(mse...@brynmawr.edu) or Mike Angilletta (mangille...@isugw.indstate.edu) for 
further information regarding this position. Review of applications will begin 
immediately. Preference will be given to candidate that can start on or before 
June 1.
-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Southern Illinois University
Carbondale, IL 62901

http://www.zoology.siu.edu/sears/mike_sears_home.html

Mailing address after July 1, 2009:

Department of Biology 
Bryn Mawr College
101 N. Merion Ave 
Bryn Mawr, PA 19010 


Re: quoted anti-evolution statements retracted

2007-10-26 Thread Mike Sears
Yes, but we should be careful not to remove origins from the realm of science. 
Seriously, at what nanosecond after the first spark of life was ignited did 
evolution begin? Personally, I choose not to separate the two, and can't 
really think of a good reason why anyone should.

Mike

On Friday 26 October 2007 10:17:13 am Elizabeth Rich wrote:
 Jacobson's retraction of his fifty year-old statements also shows how the
 topic of evolution is often linked to the origin of life when they are in
 fact two different discussions.  It seems to be a creationist tactic to
 position them as the same.


-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Soutern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
cell: 618-528-0348
web: http://www.science.siu.edu/zoology/people/sears.html


Without deviation from the norm, 'progress' is not possible.  Frank Zappa


Re: OpenOffice bug hits multiple operating systems

2007-09-26 Thread Mike Sears
So does this mean that when a similar exploit is found in Microsoft Office, 
that it is still a more secure application because it affects fewer operating 
systems? (...because the folks in Redmond don't offer a Linux version of 
Microsoft Office). And note the source...CNET sites (e.g., ZDNET) are 
typically more sympathetic to Micro$oft. And I notice a Microsoft bias in 
your email address as well!

My 2 cents.

Mike


On Wednesday 26 September 2007 03:02:59 pm Sharif Branham wrote:
 This article seems relevant in light of some of the recent conversations
 about alternatives to MS Excel.


 Security experts have discovered vulnerabilities in OpenOffice.org that
 could allow attackers to remotely execute code on Linux, Windows or Apple
 Mac-based computers.
 http://news.zdnet.com/2100-1009_22-6209919.html?tag=nl.e550

  Date: Wed, 26 Sep 2007 11:19:09 -0400 From: [EMAIL PROTECTED] Subject:
  Call for Papers: Remote Sensing of Terrestrial Carbon Fluxes and
  Vegetation Biophysical Properties To: ECOLOG-L@LISTSERV.UMD.EDU 
  Apologies for cross posting.  Call for Papers  Remote Sensing of
  Terrestrial Carbon Fluxes and Vegetation Biophysical Properties 
  Special Paper Session for the 2008 Annual Meeting of the Association of
  American Geographers (AAG)  April 15-19, Boston, Massachusetts  The
  estimation of carbon fluxes between the terrestrial biosphere and the
  atmosphere has important scientific and political implications. Remote
  sensing has proven a valuable tool for directly or indirectly estimating
  terrestrial carbon fluxes at landscape, regional, continental, and
  global scales. Remote sensing is also effective in estimating
  vegetation biophysical properties including vegetation biomass, leaf
  area index (LAI), fractional vegetation cover, and phenology that are
  explicitly used for estimating ecosystem carbon fluxes in empirical
  approaches or process-based biogeochemistry models.   This session
  will focus on the use of remote sensing data and techniques for
  estimating ecosystem carbon fluxes and vegetation biophysical properties
  at various spatial and temporal scales. This session will include, but
  not limited to, the following topics:  (1) Scaling-up site-level
  measurements on ecosystem carbon fluxes (e.g., eddy covariance
  measurements) to regional or continental scales using remote sensing
  data;  (2) Quantifying ecosystem carbon fluxes at landscape, regional,
  or continental scales using remote sensing data and techniques;  (3)
  Detecting land use/land cover change, disturbances (e.g., fires, and
  insect defoliation), and extreme climate events (e.g., droughts) and
  understanding their impacts on regional carbon budgets by combining
  remote sensing and other techniques;  (4) Estimating vegetation
  biophysical properties including vegetation biomass, LAI, fractional
  vegetation cover, and vegetation phenology at landscape, regional, or
  continental scales using optical or microwave remote sensing.  We also
  encourage submissions simulating ecosystem carbon fluxes at regional or
  continental scales using empirical or biogeochemistry models driven by
  remote sensing data (e.g., vegetation indices, LAI, vegetation
  phenology).   Abstract submission details are available at the AAG
  website (http://www.aag.org/annualmeetings/2008/papers.htm). If you are
  interested in participating in this special session, please submit your
  abstract through the online submission system by October 31, 2007. After
  you submit you abstract, please send me an email containing: (1) Your
  name, affiliation, presentation title, and abstract; (2) The “PIN”
  number assigned to you by the online submission system.   Please feel
  free to contact me if you have any questions for the special session or
  the abstract submission procedures.   Dr. Jingfeng Xiao Department of
  Earth  Atmospheric Sciences Purdue University CIVIL 550 Stadium Mall
  Drive West Lafayette, IN 47907-2051 Tel: (765) 496-8678; Fax: (765)
  496-1210 Email: [EMAIL PROTECTED] http://web.ics.purdue.edu/~xiao3

 _
 Discover the new Windows Vista
 http://search.msn.com/results.aspx?q=windows+vistamkt=en-USform=QBRE



-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Soutern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
cell: 618-528-0348
web: http://www.science.siu.edu/zoology/people/sears.html


Without deviation from the norm, 'progress' is not possible.  Frank Zappa


Re: Christianity survey

2007-08-27 Thread Mike Sears
For a counterexample to this tired argument for irreducible complexity, check 
out :

Bridgham, Carroll, and Thornton. 2006. Evolution of hormone-receptor 
complexity by molecular exploitation. Science 312:97-101.

Turns out all the parts don't have to be there simultaneously afterall.  

Cheers,

Mike


On Sunday 26 August 2007 09:08:38 pm Carissa Shipman wrote:
 I am a biology student at Temple University and I have
 conducted an NSF funded systematics project for the order
 Hymenoptera at the American Museum of Natural History. My
 question is why is the scientific community so convinced of
 evolution? There are very few publications concerning
 evolution at the molecular or biochemical level. Most
 scientists are baffled at how such molecular systems such
 as blood clotting actual evolved in a step by step manner.
 It looks to me like many of the molecular inter workings all
 needed to be there simultaneously for the end product to
 function properly. The biosynthesis of AMP is just as
 baffling. How could that have happened in a step by step
 fashion? You can speculate, but no evolutionist has the
 answer. So if you can not explain how the most nitty gritty
 machines of life molecules learned to function in the
 intricate ways that they do why are you so certain that
 everything evolved? Science is looking at the details. All
 science textbooks I have read have relayed very little
 evidence of evolution at the molecular level. They just say
 it happened. Since Darwinian evolution has published very
 few papers concerning molecular evolution it should perish.
 Systematics addresses genetic similarities between species,
 but it does not address exactly how those genetic
 differences and similarities came to be. There maybe fossils
 and genes, but you need more than this. I am not convinced
 of evolution, but still choose to educate myself in what it
 teaches and believes. How do scientists explain how even the
 slightest mutation in the human genome is highly detrimental
 most of the time? If even the slightest change occurs in our
 genome it is oftentimes fatal. Believing that this mechanism
 lead to all the species we see today takes a great deal of
 faith.For instance if even one step of the blood clotting
 process were disturbed the effects would be disastrous.
 Also, why does evolution leave out mathematical statistics
 of how each mutation arose. TPA a component of blood
 clotting has 4 domains. If we attempted to shuffle the genes
 for these four domains the odds of getting all four domains
 together is 30,000 to the fourth power, and that is just for
 TPA! Calculating mutation rates and the odds of getting
 certain genes to match up perfectly for the ultimate
 function shows us that it takes more faith to believe that
 we evolved from primordial slime. The earth has had
 thousands of lightning bolts hit it every year and we have
 not seen life spawn from molecules. If evolution happened we
 would see it reoccuring time and time again from the bottom.
 Why have we not seen it, because conditions have not been
 perfect? I do not deny adaptation within species, but this
 is far different than the assumptions of macro evolution. If
 an evolutionist can challenge my arguments I would gladly
 like to hear your rebuttal. Publications for molecular
 evolution use many words such as unleashed. How was it
 unleashed, what were the step by step mechanisms that you
 can say for certain occurred, leaving macro leapages out of
 the picture? You see fossils, but you have no detailed
 explanations as to how one may have turned into the other at
 the molecular level. If you can not explain it at the
 molecular level you have nothing to base your assumptions
 on. Also all the breeds of dogs are very different from one
 another and some of their skeletal structures look
 unrelated. The different types of dogs that you see arrived
 through intelligent interaction, not evolutionary processes.
 Change occurs in nature to a limited extent. That is all.
 Sincerely, Carissa Shipman



-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Soutern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
cell: 618-528-0348
web: http://www.science.siu.edu/zoology/people/sears.html


Re: Christianity survey

2007-08-22 Thread Mike Sears
Not to start yet another holy war here, but I'd say that although the evidence 
is overwhelming in support of evolution as the mechanism responsible for the 
diversity of life we see today, there is NO evidence that the hand of any 
deity or supernatural power had anything to do with it (...not even the 
fairies in my garden...go ahead, prove they don't exist!).

Although I probably can't change the mind of anyone with a predisposition to 
faith, I'd hope that such a belief doesn't make it into the classroom where 
teaching science is concerned. Our country is far enough behind in the 
sciences without that baggage. I believe that it truly is irrational and 
incompatible that anything supernatural could or should be used to explain 
observable phenomena

Cheers,

Mike 

p.s. I find it very peculiar that your god (Yahweh, I assume) is always 
refered to as masculine (e.g., 'He' and 'His' in the email below).  Is this 
because man was created in God's image (after most of the rest of 
evolutionary history took place) and woman was created later?  And if so, 
where is my missing rib? ;)

On Wednesday 22 August 2007 07:26:22 Tom Mosca III wrote:
  He has a hard time understanding how Christians can
  reconcile their beliefs with teaching science,
  specifically evolution.  Yes, I believe he is a
  Creationist.

  This has never been a conflict for me.  As I do not claim to know more
 than God, I do not deny him any tools He wishes to use.  If God wishes to
 use evolution, who am I to say He can't? The common counter-argument to
 this postion is that the Bible doesn't support the time line of evolution. 
 But, the Bible was not written by God, it was written by men.  If at a time
 prior to the evolution of mankind God wished a day to be of a longer
 duration, who am I do deny Him that permission? It is my position that God
 used evolution to create the lifeforms that populate this small portion of
 His universe.  The evidence is compelling.  Unlike the Bible, the fossil
 record was written by God.  I don't believe that God would have made such a
 mistake as to create a flawed fossil record.

 Take care, Tom
 Tom Mosca III, Ph.D.



-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Southern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
web:http://www.science.siu.edu/zoology/people/sears.html
http://www.ecology.siu.edu

Natural selection is a mechanism for generating an exceedingly 
high degree of improbability  Sir Ronald A. Fisher (1890-1962)


Re: Video Analysis Software

2007-06-07 Thread Mike Sears
Beth,

I'm not sure what your price range is, but Noldus ObserverXT might be what you 
are looking for (http://www.noldus.com).

Cheers,

Mike

On Wednesday 06 June 2007 16:57:26 Beth Holbrook wrote:
 Hello Ecologers,

 I am looking for software suggestions.  I am analyzing videotape of
 foraging fish to measure distance of attack, swimming speed prior to
 attack, and angle of attack.  Currently, I am using Microsoft Moviemaker to
 take still images which I import into ImageJ to make the measurements. 
 This process is tedious and time-consuming, and I am hoping that there is
 some software out there where I can import the video and make measurements
 directly.  Any suggestions??

 Many thanks,
 Beth
 ___
 Beth Holbrook
 Ph.D. Student
 Water Resources Science
 University of Minnesota Duluth
 218-726-7079
 [EMAIL PROTECTED]





 ___
_ Building a website is a piece of cake. Yahoo! Small Business gives
 you all the tools to get online. http://smallbusiness.yahoo.com/webhosting



-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology  Center for Ecology
Southern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
web:http://www.science.siu.edu/zoology/people/sears.html
http://www.ecology.siu.edu

Natural selection is a mechanism for generating an exceedingly 
high degree of improbability  Sir Ronald A. Fisher (1890-1962)


Behavioral Ecologist--Southern Illinois University Carbondale

2006-10-30 Thread Mike Sears
Behavioral Ecologist--Southern Illinois University Carbondale

The Department of Zoology at Southern Illinois University Carbondale seeks a 
promising scientist in the general area of behavioral ecology. Applications 
are invited for a tenure-track position as an Assistant Professor with a 
start date of August 16, 2007. Applicants must hold a Ph.D. in Zoology or a 
closely related field, and have a record of relevant postdoctoral research 
training, an externally funded research program or the potential for 
developing one, and a significant record of peer-reviewed publications. 
The successful candidate will enhance and complement existing programmatic 
strengths in the areas of ecology, environmental biology, conservation, 
biodiversity, and evolutionary biology with a basic research program in some 
aspect of behavioral ecology.  Areas of emphasis in which the Department 
seeks to develop further expertise include, but are not limited to, species 
interactions (competition, predator-prey relationships), and avian biology.  
Teaching responsibilities will include Animal Behavior and 
undergraduate/graduate courses dependent upon the individual’s expertise and 
program needs.

SIUC is committed to becoming a leading public research university  
(http://news.siu.edu/s150/ ).  It is a large, public, comprehensive 
research-intensive university situated in a pleasant small-town setting two 
hours southeast of St. Louis. The Department of Zoology, with a faculty of 
25, offers B.S., M.S. and Ph.D. degrees in Zoology 
(http://www.science.siu.edu/zoology/ ).  SIUC is an affirmative action/equal 
opportunity employer that strives to develop a diverse faculty and staff and 
to increase its potential to serve a diverse  student population. All 
applications are encouraged and will receive consideration.
Applications: Review of applications will begin Dec. 1, 2006 and continue 
until the position is filled. Applicants should submit a curriculum vitae, a 
statement of teaching and research interests, and the names and addresses of 
at least three references, to: Behavioral Ecology Search Committee, 
Department of Zoology, Mail Code 6501, 1125 Lincoln Dr., Southern Illinois 
University Carbondale, Carbondale, IL 62901. E-mail: [EMAIL PROTECTED]


Re: How Steve Irwin Could Have Used Entertainment in a Better Way

2006-09-27 Thread Mike Sears
Regardless of my thoughts on Steve Irwin, there is at least one big difference 
between the harassment that Irwin imposed on animals and that imposed by 
researchers employing the various methods listed by Sharif...we researchers 
must have our methods approved by Animal Care and Use Committees, meaning 
that a group of peers and laypeople review our protocols to determine 
whether the welfare of the animal is endangered, whether the methods are 
ethical, and that the scientific discovery merits the means used to collect 
the information. I doubt the the croc hunter had to follow the same stringent 
guidelines that many of us on the list must go through. 

Mike


On Wednesday 27 September 2006 03:25, Sharif Branham wrote:
 Tana has a really good point. I was very suprised once I learned how mch
 trauma a scientist can cause an animal in the name of science. I think
 catching bats and birds in nets, removing chicks from nest, opening snakes
 and putting tracking devices inside their bodies, cutting notches or holes
 in the carpace of turtles and many other common research methods cause as
 much if not more truama than anything Steve Irwin did.

 Stan I have to disagree with your statement..Steve Irwin, as far as I
 know, did not conduct meaningful research of any kind, and his
 conservationism was more self-serving than beneficial to
 wildlife in the real world.

 Steve Irwin had a reserach vessel CROC1 that was used for doing research.
 He was doing ground breaking crocodile research. He was also involved with
 shark research as well as the many breeding projects he did at the zoo.  He
 also preserved a lot of land in the name of widlife conservation. Steve,
 along with his wife, also started the organization Wildlife Warriors
 Worldwide.

 I wouldn't say he was all that self serving. He had a passion for
 conservation and he lived full throttle.

 Sharif

 Original Message Follows
 From: Tana Wood [EMAIL PROTECTED]
 Reply-To: Tana Wood [EMAIL PROTECTED]
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Subject: Re: How Steve Irwin Could Have Used Entertainment in a Better Way
 Date: Tue, 26 Sep 2006 18:07:03 -0500

 This has been a very interesting thread.  Stan, just to make sure
 that I understand you correctly, it sounds to me like your stance is
 that the handling of wildlife should be restricted to research
 purposes only, and that entertainers/educators should limit their
 handling of wildlife to these instances, or observe from afar due to
 the possible stress that animals might incur.

 I am by no means a wildlife biologist; however, I have had some
 experience conducting research with with frogs, fish, birds, and sea
 turtles.  I would argue that there is a great deal more stress
 involved in these situations than in the temporary handling of an
 animal to get interesting, educational and entertaining footage.  As
 scientists, we clip off toes, put heavy collars around their necks,
 bands around their legs, glue radio tracking devices to their backs,
 capture them repeatedly, and I know many a herpetologist who has
 caught snakes for purposes other than pure research.  In fact, I'm
 not sure I know one who hasn't:)  I am certainly not disparaging the
 value of good science... My point is simply that I don't remember
 hearing of any animals that Steve Irwin harmed in his effort to
 educate and entertain, but I myself have witnessed much harm in the
 name of scientific learning.  For this reason, I am having a hard
 time buying your argument that capturing animals solely for
 educational purposes is unduly stressful in comparison to good
 scientific research.

 Currently, I am working in Mexico, where just the other day, a farmer
 told me that his community has killed as many as six jaguars in the
 past five years. They were afraid that the jaguars would start
 attacking them.  I hear about people terrified that geckos cause
 strange illnesses and fevers, and someone came by my house just
 yesterday to tell me that I should get rid of all of the plants and
 vegetation in my garden because it could attract mosquitos and
 snakes.  If Steve Irwin holding a venomous snake for 30 minutes
 captures the attention of people long enough for them to lose just a
 little bit of that fear and need to destroy, well, I'm not sure I see
 the harm.

 Tana


 Tana Wood
 Department of Environmental Sciences
 University of Virginia

 On Sep 26, 2006, at 4:58 PM, stan moore wrote:
   There is no doubt that Steve Irwin was a very popular entertainer.
   We have
   people in the U.S. who do shows with birds that are also very
   entertaining
   and they also claim to be conservationists.  But at least in the
   U.S. there
   are laws to protect birds and you normally do not see
   entertaining , bird
   shows, including raptor shows displaying wild, native birds because
   it is
   illegal to do so.
  
   Steve Irwin obviously caught the attention of a lot of people and
   thrilled
   children in particular.  In and of itself, I 

Re: How Steve Ir.win Could Have Used Entertainment in a Better Way

2006-09-27 Thread Mike Sears
I'm sorry, but my response was not mere whineging. I don't believe I could 
make the case to my university that because students in my class tend to 
sleep more than take notes that I should be allowed to handle venomous 
reptiles or wrestle alligators in class.  Yes it would be entertaining, just 
like Steve's show, maybe more so because the alligator would win. But the 
risk involved would likely be judged nowhere close to the benefit that the 
students would obtain...and just what would that be again? They likely still 
wouldn't want to read their texts. So even though the students would be more 
aware of the danger of handling crocs by seeing their professor eaten (...it 
might even be must see tv week after week in the dorms), my poor exercise and 
resultant lack of an arm would be a failure. 

All that said, as someone that works within the field of herpetology, I do see 
a certain breed of students (and adults) that feel that they must  handle, 
bag, or keep many animals that would best be left alone. At some level I am 
sure that Steve and others in his genre encourage this behavior in some of 
these individuals. To most though, the effects of his show are benign...both 
with respect to endangering or respecting animals as well as promoting 
conservation. 

More than anything here, I am bothered by the fact that some believe any means 
justifies the end result. Historically, there are many examples to show that 
this sort of wreckless behavior can backfire.

My two cents,

Mike

On Wednesday 27 September 2006 09:26, David M. Lawrence wrote:
 As I read this professional criticism (more appropriately referred to as
 whingeing) about Steve Irwin I have to wonder how much of it is based on
 envy that people like Irwin are popular and beloved around the world while
 most of us work in relative obscurity teaching students who spend a lot of
 time asleep in class.

 There is room, and a need, for showmanship.  We need the Steve Irwins of
 the world as much as we need those who go through committee review to
 obtain approval of research protocols.  Maybe more, as public support for
 conservation is essential if we are going to save anything.  The public
 learns via the Irwins, not through us.  Most of us, if we attempted to
 start a television show to educate the public, would be miserable failures.
  He wasn't, and should be commemorated for that.

 Dave

 --
  David M. Lawrence| Home:  (804) 559-9786
  7471 Brook Way Court | Fax:   (804) 559-9787
  Mechanicsville, VA 23111 | Email: [EMAIL PROTECTED]
  USA  | http:  http://fuzzo.com
 --

 We have met the enemy and he is us.  -- Pogo

 No trespassing
  4/17 of a haiku  --  Richard Brautigan

 -Original Message-
 From: Ecological Society of America: grants, jobs, news
 [mailto:[EMAIL PROTECTED] On Behalf Of Mike Sears
 Sent: Tuesday, September 26, 2006 6:52 PM
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Subject: Re: How Steve Irwin Could Have Used Entertainment in a Better Way

 Regardless of my thoughts on Steve Irwin, there is at least one big
 difference between the harassment that Irwin imposed on animals and that
 imposed by researchers employing the various methods listed by Sharif...we
 researchers must have our methods approved by Animal Care and Use
 Committees, meaning that a group of peers and laypeople review our
 protocols to determine whether the welfare of the animal is endangered,
 whether the methods are ethical, and that the scientific discovery merits
 the means used to collect the information. I doubt the the croc hunter had
 to follow the same stringent guidelines that many of us on the list must go
 through.

 Mike

-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology
Southern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
web:http://www.science.siu.edu/zoology/people/sears.html
http://www.ecology.siu.edu

Natural selection is a mechanism for generating an exceedingly 
high degree of improbability  Sir Ronald A. Fisher (1890-1962)


MS/PhD assistanships available

2006-07-26 Thread Mike Sears
PhD or MS in Behavioral Thermoregulation

I have an NSF-funded research assistantship for a Masters or PhD student 
available to start either this fall or next spring.  Work will involve both 
experimental and modeling approaches to study behavioral thermoregulation and 
animal movement strategies through spatially-heterogeneous thermal habitats. 
Part of the work will require working on lizards in experimental field 
enclosures, but applicants interested in other organisms (e.g., insects or 
small mammals) are also encouraged to apply. Competitive applicants will have 
backgrounds in one or more of the following areas: ecology, biology, 
physiology, animal behavior, statistics, computer science, GIS, or 
mathematics. Students with a quantitative background (or an interest in 
quantitative approaches to biological problems) are especially encouraged to 
apply. Additional positions may become available, although these will likely 
be funded through teaching assistantships. Interested applicants should send 
a letter of interest along with a CV (including GRE scores), and a list of 
three potential references by email to [EMAIL PROTECTED] or by regular 
mail to Mike Sears, Department of Zoology, Southern Illinois University, 
Carbondale, IL 62901.

-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology
Center for Ecology
Southern Illinois University
Carbondale, IL 62901

office: 618-453-4137
lab: 618-435-4190

http://equinox.unr.edu/homepage/msears


Re: Mark-Recapture in R

2006-07-14 Thread Mike Sears
Hi Ned,

First, why not use Program Mark? Second, although I haven't tried it, 
there is RMark (http://nmml.afsc.noaa.gov/Software/marc/marc.stm), which 
is an R interface to the Mark procedures from which you should be able 
to run Pradel models.

Mike


Ned Dochtermann wrote:
 Is anyone aware of mark-recapture libraries for R? Specifically Pradel
 models? 

 I have searched the various listservs via CRAN's recommended search engines
 as well as the available libraries to no avail. 

 Thanks for any help.
 Ned Dochtermann



 *
 Ned Dochtermann

 [EMAIL PROTECTED]
 http://www.unr.nevada.edu/~dochterm/
 775-784-6781

 Graduate Group in Ecology, Evolution and Conservation Biology
 Fleischman Agriculture Building, Room 145
 University of Nevada, Reno
 *

 Beyond such discarded fundamentals as 'matter' and 'force' lies still
 another amidst the inscrutable arcana of modern science, namely, the
 category of cause and effect.
 Karl Pearson

   


Re: non-metric multi-dimentional scale analysis

2006-05-01 Thread Mike Sears
I have worked with PC-ORD, and I highly recommend it as well. If you can't 
afford the price tag, there are several options for performing NMDS and other 
ordination techniques in R. For instance, check out the labsv package in R 
(http://cran.r-project.org/src/contrib/Descriptions/labdsv.html and 
http://ecology.msu.montana.edu/labdsv/R/lab9/lab9.html).

Cheers,

Mike


On Monday 01 May 2006 10:35, L. Brian Patrick wrote:
 Hello!

 The best book to use for a better understanding of NMS:

 McCune, B., and J.B. Grace.  2002.  Analysis of Ecological Communities.
 MjM Software, Gleneden Beach, OR, USA.  (NMS is chapter 16, pp. 125-142)

 Bruce McCune is also one of the authors of the software package PCORD.
 I cannot begin to tell you how helpful that book is and how great the
 software is to run the analyses.  Both the book and the software can be
 purchased relatively inexpesively directly from MjM Software:

 http://home.centurytel.net/~mjm/

 Best regards,  L. Brian Patrick

 Ashwini Upadhyay wrote:
 Dear All,
 
   Recently while starting my data analysis for looking at the habitat use
  comparison between the LIvestock and wild-ungulates. I came across
  Non-metric multi-dimenstional scaling. I could get the references but
  could not trace out how to do it, if anyone can help me out it would be
  nice. I have habitat variables as aspect, slope, distance to escape
  terrain, altitude, terrain typ in categorical classes. I am using the
  SPSS software.
 
   With regards
 
   A.Kumar
 
 
 -
  Jiyo cricket on Yahoo! India cricket
 Yahoo! Messenger Mobile Stay in touch with your buddies all the time.

-- 
Michael W. Sears, Ph.D.
Assistant Professor
Department of Zoology
Center for Ecology
Southern Illinois University
Carbondale, IL 62901

office: 618-453-4137
lab: 618-453-4190

web: http://equinox.unr.edu/homepage/msears


Re: GPS units and accuracy data

2006-03-30 Thread Mike Sears
Not to be a cheerleader for Trimble, but they do offer another nice handheld 
unit that is much more accurate than the GeoXT. The unit is the GeoXH 
(http://www.trimble.com/geoxh.shtml).  It offers real time sub-meter accuracy 
and 30-cm accuracy when post corrected. Also with the purchase of an 
additional Zephyr antenna, the accuracy can be increased to 20-cm (...but is 
an extra 10-cm really worth the price of an antenna at ~$2000?!). The unit 
costs ~$5000...and without the antenna, it doesn't require a backpack, which 
is really nice.

You might also consider the GeoBeacon, which sends realtime corrections to 
your GeoXT through a Bluetooth connection. I haven't used this product 
personally, but have heard that it is nice.

Cheers,

Mike




On Thursday 30 March 2006 09:35, Dave Thomson wrote:
 I would agree that the GeoXT is not a high caliber GPS unit.  I was
 dissuaded from using them by the very helpful techs at GeoPlane
 Services:

 http://www.geoplane.com/trimble/pathfinderproxrs.html

 I have no experience with Leica products, but I wouldn't imagine a
 handheld unit could rival the data quality of a backpack unit.  I have
 experience with the Trimble TSC1 Asset Surveyor/Pathfinder Pro XR
 combination (dGPS) but was looking for the ability to utilize
 orthorectified aerial photography in the field during data collection.
 I thought that the GeoXT might fit the bill; I was told, unfortunately,
 that the GeoXT's resolution was poor, and in particular the Z-axis was
 very poor.

 Instead, he recommended renting one of their Pathfinder Pro XRS backpack
 dGPS units, which they can pair with an Allegro CX field PC which takes
 the place of the Trimble data collector.  As you will see in the link
 below the Allegro can hold up to a gigabite of data and display color
 images very well.

 http://www.geoplane.com/junipersystems/allegrocx.html

 Of course not everyone can afford a Pathfinder Pro XR/S and an Allegro
 CX.  To be honest, I am not even sure how much they would run you
 currently.  I did see used Pathfinder Pro XR backpack units sell on eBay
 in the $5-10,000 range!  The big questions to ask yourself are: 1) do
 you need this level of precision in your data, and 2) do you need to own
 one of these setups?

 If the answers to the above are yes, and no, respectively, then consider
 renting the units from a business such as GeoPlane.  The last quote I
 had from them for that setup was $1175 a month.  The techs at GeoPlane
 can help you decide what you require without the pressure of a sales
 department.

 Hope that helps,

 David Thomson

 PS - I noted that one person discussed the ability to hold a lock on
 satellites underneath a tree canopy with a GPS unit (handheld?).  This
 is not common.  In fact I was surprised that someone had been 'offered'
 data by their GPS unit in such a situation.  Perhaps this is because (I
 believe) most handheld units do not have good data quality assurance
 functions and will offer any position they 'acquire'.  User beware...

 High quality units will not even offer the user any data in such
 situations.  The Pathfinder Pro XR/TSC1 combination that I have used in
 the past was only able to acquire a 3D lock in the near absence of
 canopy; certainly the gap in the canopy had to be quite large (i.e.
 expose sufficient sky to adequately 'see' enough satellites).  In some
 situations where I needed to acquire whatever data I could, I would
 alter the settings to acquire the less accurate 2D data.  Later, while
 using the data, I was surprised at it's obvious innacuracies.

 The techs at GeoPlane did note that they have range poles can cabling
 that they offer with their backpack units, which allow the user to raise
 the antenna (what was it?) 10 feet (meters?) - sorry it's been awhile.
 They said that this can help one acquire a signal in and around tree
 canopies, but (of course) it is no guarantee.


 -Original Message-
 From: Ecological Society of America: grants, jobs, news
 [mailto:[EMAIL PROTECTED] On Behalf Of Malcolm McCallum
 Sent: Tuesday, March 28, 2006 7:22 AM
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Subject: Re: GPS units and accuracy data

 I have not used a Leica GS20, how does it compare to the GeoXT?
 also,=20
 =20
 Malcolm L. McCallum
 Assistant Professor
 Department of Biological Sciences
 Texas AM University Texarkana
 2600 Robison Rd.
 Texarkana, TX 75501
 O: 1-903-233-3134
 H: 1-903-791-3843
 Homepage: https://www.eagle.tamut.edu/faculty/mmccallum/index.html
 =20

 

 From: Ecological Society of America: grants, jobs, news on behalf of =
 Marlow G. Pellatt
 Sent: Mon 3/27/2006 11:26 PM
 To: ECOLOG-L@LISTSERV.UMD.EDU
 Subject: Re: GPS units and accuracy data



 There are several GPS units with as good or better precision than the =
 GeoXT.
  You will need to decide what Basic mapping grade handheld units include
 =
 the
 Leica GS20, Trimble Pathfinder series, and several other survey and =
 mapping
 level GPS 

Ph.D. GRADUATE ASSISTANTSHIP ON TEXAS HORNED LIZARDS

2006-03-14 Thread Mike Sears
Please post...

Ph.D. GRADUATE ASSISTANTSHIP ON TEXAS HORNED LIZARDS: I seek to fill a 
graduate research assistantship with a student having a M.S. in wildlife 
science, zoology, biology, or related field to study conservation, ecology, 
and management of the Texas horned lizard on an urban military installation.  
Work will include telemetry of horned lizards, sampling of vegetation and ant 
prey base, habitat modeling, and translocation. 

Qualifications: independent but able to work well in a team setting and 
with 
agency personnel, great work ethic, GIS experience, minimum of 1100 verbal + 
quantitative GRE score.   Incipient interest in ants would be a plus. 

Graduate stipend is $1,218/mo with complete tuition waiver and health 
insurance.   Starting date: 1 May 2006.
  
Submit letter of interest, resume, copies of GRE scores and transcripts 
and 
names and phone numbers of 3 references to: Dr. Eric C. Hellgren, Cooperative 
Wildlife Research Laboratory, Mailcode 6504, Department of Zoology, Southern 
Illinois University, Carbondale, IL 62901-6504. 618-453-6941 (phone); 
618-453-6944 (fax); E-mail: [EMAIL PROTECTED] E-mail applications are 
encouraged.  Application review will continue until a student is chosen.  




-- 
Michael W. Sears, Ph.D.
Associate Editor, Herpetologica
Assistant Professor
Center for Ecology
Department of Zoology
Southern Illinois University
Carbondale, IL 62901

phone: 618-453-4137
web:http://equinox.unr.edu/homepage/msears
http://www.ecology.siu.edu

Natural selection is a mechanism for generating an exceedingly 
high degree of improbability  Sir Ronald A. Fisher (1890-1962)