[Histonet] I did it I am now a certified HTL

2016-04-26 Thread Lewis, Patrick via Histonet

Hi Everyone

After years of putting it off, I finally took my ASCP HTL  exam and passed it.

Huzzah!

Patrick.

Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Advice on exam prep for the ASCP HTL exam

2016-03-15 Thread Lewis, Patrick via Histonet

Hi everyone

I am going to take my ASCP HTL exam on the 21st of April

Any advice for studying?

I have been going over the sample online tests for both the HT and the HTL and 
I bought the Michigan study guide.

Thanks

Patrick



Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Problem with ccmount drying out and reexposing tissue sections

2015-09-29 Thread Lewis, Patrick via Histonet

Hi everyone,

Has anyone experienced a problem with sigmas cc/mount solution.

I liberally cover my section with it to form a protective seal.,  But with my 
current bottle it seems that when it dries it re-exposes the tissue and does 
not form a protective layer.

I end up having to reapply it.   The 2nd apply seems to get me the protective 
layer that I want, but I am concerned that drying/exposure from the first 
application will damage the staining that I have.

I don't want my post staining slides to be exposed to air for a length of time 
between hematoxylin and cover slipping.

This is a fairly recent problem and I am wondering if I just have a bad batch 
of cc/mount.

CAT# C9368-30 ML

Lot# MKBR27838V

I called Sigma and they are sending me a new bottle from a different lot.

But they haven't experienced this problem before with cc/mount.



Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Quick H202 quenching question.

2015-09-22 Thread Lewis, Patrick via Histonet
If I have an IHC where I am staining 2 slides from the same block, one with one 
primary antibody and the other with a different primary antibody.

And one antibody's slides have high nonspecific background, but the other 
antibody's slides have no background,  Can I deduce that the background 
staining is not caused by insufficient H202 quenching/blocking?

All the steps were the same, except for the primary antibody/secondary 
antibody.  Also, they did have different epitope retrievals.

But the wash buffers/blocking buffers/and substrate were the same.

I am fairly confident that my background problems are related to this 
particular primary antibody, and not the actual quenching/blocknig from my IHC 
protocol, but I thought I'd check with you guys.

Patrick.

Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Endogenous Peroxide staining help

2015-09-11 Thread Lewis, Patrick via Histonet

Hi everyone,

I seem to have a lot of endogenous Peroxide background staining in my FFPE IHC. 
 Human tonsil tissues, with some attached muscle.

I do a H202 block at 0.3% H202 in TBS pH 8.0 for 30 minutes.

Then I wash x3  with TBST 0.05% Tween20, pH 8.0

Then I serum block with 2% NGS in TBST for 30 minutes.

Then I wash x3 TBST

Then I add my primary antibody in 2% NGS in TBST overnight.

Then I wash x3 TBST

Then I add my HRP-labeled 2ndary antibody for 30 minutes.

Then I wash x3 TBST

Then I have add my AEC Substrate.

Should I increase the concentration of H202?
Should I increase the time in H202?

Is there a different step in the IHC protocol that is better for blocking 
endogenous H202 activity?
Is it possible to lose/reverse the blocking for some reason?

I am concerned that my HRP labeled secondary may be to blame.

Thoughts?

Patrick.

Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] More on H202 issues

2015-09-11 Thread Lewis, Patrick via Histonet

Hi Everyone

Thanks for your responses.

I am looking at cell surface markers,
Sorry I should have said.

Based on what I found out below:

Methanol is out, even though I agree that Methanol does enhance the effect of 
H202 blocking.
(I suppose I could try it to see how much/if any epitope loss there is in 
relation to H202 quenching,  At least It would help identifying false positives 
that are actually H202 artifacts.)

Also it looks like increasing the concentration of H202 is out.

As to when though,

It looks like with cell surface markers I should block after the primary, or 
even after the 2ndary?
Can I do that successfully with a HRP labeled 2ndary?

thoughts?

Patrick.


What solutions or reagents should I use to dilute hydrogen peroxide
Methanol, PBS, distilled water or saline can be used to dilute hydrogen 
peroxide. Morphology of blood smears and peroxidase-rich tissues could be 
damaged by the aqueous hydrogen peroxide solution. Therefore, methanol is a 
better choice in this case. Some cell surface markers are very sensitive to 
methanol/hydrogen peroxide quenching, reducing the staining of antigenic site, 
particularly on frozen sections. So using hydrogen peroxide in PBS is 
recommended for cell surface or membrane markers.

What concentration of hydrogen peroxide is commonly used
3% hydrogen peroxide is commonly used to block endogenous peroxidase activity. 
However, certain tissues/cells/antigen (i.e. cell surface markers such as CD4) 
can be destroyed by high concentration of hydrogen peroxide. So a lower 
concentration (0.3%) should be used.

Where  should I do hydrogen peroxide blocking during IHC procedure
The blocking can be done (1) after rehydration to water and before antigen 
retrieval, (2) after antigen retrieval and before primary antibody incubation, 
(3) after primary antibody incubation, or (4) after biotinylated secondary 
antibody incubation. For certain antigens such as CD4 and CD8, hydrogen 
peroxide blocking has detrimental effect on the epitopes, thus reduce intensity 
of antibody staining. Therefore, blocking after primary antibody or secondary 
antibody incubation is recommended.


Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Can Ice Crystal artifact pick up AEC substrate.

2015-08-05 Thread Lewis, Patrick via Histonet
Hi Everyone,

I am seeing some red granular staining with my AEC substrate, and I am not sure 
if its real, or Ice crystal artifact, or debris from the slide directly.


It's in several areas and is consistent between duplicates.

So can I rule out slide debris?

How deep would Ice crystals go in a block.  If I cut 10-15 7 uM sections deeper 
would I eliminate ice crystals from one slide to another?


I don't have any pictures yet, but I can try and post it when I do.

Patrick.


Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Still having Issues with Acetone fixation.

2015-05-07 Thread Lewis, Patrick
Hi everyone,

Sorry to keep posting about this,

But I am still having Acetone issues.

I am doing IHC for Cell surface markers that are lost when fixing with etoh or 
methanol.

When I fix in 100% acetone my epitopes have great signal.

However,  when I fix in 100% acetone, my tissues all damaged by the acetone 
beyond all recognition.

I can lose up to 90% of my tissue when I fix in 100% acetone for 10 minutes.

But, I get good epitope staining if I have some tissue left on the slide.

When I fix in anything else, I lose 90% or more of my epitope staining, but my 
tissue morphology looks great.

--
What's the least amount of time I can fix in 100% Acetone for a 5uM section and 
still have it be fixed?

Is drying after the 100% acetone fixing essential? or Bad for protecting tissue 
morphology?

--
I am doing IHC on human tonsils cut to 5 uM with a 24 dry after sectioning.

When I fix in 100% acetone, I fix it at 4C for 10 minutes. Then dry for 1 hour 
in the fume hood

Should it go straight into buffer? Should it be for less time in the acetone?
Should the acetone be Room temp or -20C instead of 4C.

If I was diluting the acetone with buffer, (or etoh) then I could see going 
straight into buffer afterwards, but because I am using 100% I think that going 
into liquid right after fixing is too much of a change and my tissues go BOOM.

Please help.

Patrick Lewis


Patrick Lewis
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[Histonet] Acetone fixation problems with OCT Tissues

2015-04-28 Thread Lewis, Patrick

Hi Everyone,

I am still having issues with my IHCs with Acetone fixation.

If I fix in 100% Acetone, I get IHC staining, but my tissues are 50-90% 
destroyed.

If I fix in 4% paraformaldehyde, or 10% NBF or (95%  Etoh and/or Methanol with 
Acetone) I lose the epitopes I either get no staining or very  weak staining, 
but the tissue morphology look fine.

I just tried an acetone gradient where I cut the tissues at 5 uM and dried them 
overnight, then fixed for 10 minutes in 100% acetone, then fixed in 95% acetone 
for 1 minute, then fixed in 70% acetone for 30 seconds, then quick rinsed in 
H20, then washed as normal in DPBS pH 7.4.

I did 4 slides, 2 slides with one company's Charged slides ,and 2 slides with 
another company's charged slides.

One company's slides look completely destroyed, the others may turn out, it was 
hard to tell how much damage there was.  I'll know tomorrow when I finish 
staining and Hemotoxylin them.



Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Acetone fixing and tissue damage

2015-03-11 Thread Lewis, Patrick
Hi Everyone.

When I fix my cryosections  in acetone,  I am using HPLC grade 99.9% for 10 
minutes at -20C.

Would the Histology grade 99.5% be less damaging to them?

Higher H20 content, i.e. less than 99.5% apparently is also very bad.

With the HPLC grade I often get tissue damage, the tissue also floats off the 
slide causing a stringy effect.


Fixing with 4% p-formaldehyde or 100% Methanol, prevented the antibody from 
recognizing the Nuclear Antigens.

Looking for advice,

Patrick.
Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Cryostat purchasing

2015-02-11 Thread Lewis, Patrick

Hi Everyone,

Can anyone recommend a good Cryostat to buy for use with Human Tissues.

I'd like to look for a reasonably priced model.
Also, I'd consider paying extra for a model that is designed for human tissues 
so it has disinfection ability or is easier to disinfect than older models.
I'd also consider going with a refurbished model if the price was right.

I am used to cutting on CM3000 and CM3050s which are quite old.

Thanks

Patrick Lewis
Research Associate II Bench
Seattle Childrens Research Institute
206-884-1115

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[Histonet] Cryostat maintenance personnel

2015-01-21 Thread Lewis, Patrick
Hi everyone,

Does anyone know who I would contact about servicing an old CM3000 Cryostat.

This would be in the Seattle area and we have no service contract.

I am going to call Leica tomorrow, but if anyone has information about 
repair/servicing that would be helpful.

Thanks

Patrick.



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[Histonet] Cryostat troublshooting. CM3050

2015-01-07 Thread Lewis, Patrick
H everyone,

We have been using this old CM3050 cryostat for our Frozen OCT blocks.

I am cutting at 5 uM.

My issue is that when I use the hand rotator to cut my sections it doesn't seem 
to advance with each rotation.  It can take as many as 4 rotations to go from 
one section to another.

What would cause this, and is there an easy solution to this problem?

I can use the button to automatically move the chick holder all the forward and 
back from blinking to blinking, so I am wondering if ice crystals or debris can 
be ruled out as  the issue.

Any advice welcome.

Thanks

Patrick.

ps: when I do get the blade to cut into the block, I have to wonder if the 
section I am getting is really 5 uM, or is it thicker.  Sometimes you can tell 
if the section looks particularly thick, but other times it's hard to tell.


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[Histonet] Paraformaldehyde fixation questions

2014-10-30 Thread Lewis, Patrick
After having a lot of problems  using 100% Acetone as a fixative, I am going to 
try 4% paraformaldehyde in DPBS pH 7.4  for fixation of slides cut from fresh 
tissues snap frozen in OCT.

My plan is to cut the slides at 5 or 6 uM and dry them for 2 hours in the hood, 
then fix them in the 4% p-f for 10 minutes.

Then immediately immerse them in Room temp DPBS.

Is 10 minutes fixation long enough?  Would 30 minutes work  better?

Is there any advantage, or disadvantage of using 4C versus Room temp for 
Paraformaldehyde?


I am concerned about the drying of the tissues, and tissue loss from the slide.

I'm not sure which will be best, drying after cutting or drying after fixing.

Years ago, I vaguely remember being told that you should never dry the tissue 
after fixing it and then re-wet it.

So I am leaning towards drying after cutting, but keeping the slides wet after 
fixing.

The goal is for me to get good fixation, not destroy epitopes, and avoid the 
tissue damage that I get when I fix with Acetone.

Thanks

Patrick.

PS: My brief internet search stated that Fixation occurs faster at higher 
temperatures (which I knew) , and that Some antibodies are capricious so for 
them 4C is better. (= IHC myth that corresponds to find what works and then 
don't change it)

Is it right to assume that 4C is going to be gentler on the tissues than Room 
temp.


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[Histonet] OCT Tissue fall out and reembedding

2014-08-19 Thread Lewis, Patrick
Hi everyone.


If you have several OCT blocks in which the Tissue has fallen out and to want 
to salvage them for IHC.  What is the best way to do so to minimize freeze-thaw 
damage.

These samples were harvested and then were probably snap frozen in Isopentane 
surrounded by dry ice and stored at -80 when they were made.

The people using these blocks now have had several of the blocks in which the 
tissue has popped out of the block.

We are going to get these blocks for IHC.

What is the best way to salvage these tissues so that I can do IHC on them.

Patrick.


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[Histonet] Does anyone know where I can get a metal container to hold isopentane that I would place my OCT molds into when making Frozen blocks?

2014-08-08 Thread Lewis, Patrick
Hi Everyone.

I make my Frozen blocks by Immersing the cryo molds in a metal container (Looks 
like a larger flat base  ½ coke can) filled with Isopentane solution.  That 
container is then surrounded by Dry Ice.  We need a new metal container.  Does 
anyone know where I could buy one?

I don't really want to change to an Aluminum block method as I like the 
penetration freezing I get from liquid emersion.

Thanks

Patrick.

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[Histonet] OCT Issues

2014-05-12 Thread Lewis, Patrick
Hi everyone.

With Snap frozen tissue in OCT.  If I cut sections and fix them in cold acetone 
for 10 minutes, (Is 2 minutes vs 10 minutes going to cause any issues?)

Is it better to dry them and then put them in DPBS or just put them straight 
into DPBS?

If I changed the fixative to 10% NBF would that be better for the tissues  than 
Cold Acetone?

I am still having problems with my Frozen sections looking digested, and I am 
not really sure what is causing it.

Patrick.



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[Histonet] Is there a way to post pictures of slides on histonet? Or to make them available for people to look at?

2014-04-30 Thread Lewis, Patrick
Hi everyone,

What is a good way to post pictures of slides for you guys to look at?

I had a weird black precipitate in one of my IHCs and I'd like for you guys to 
look at them and see if you recognize what this artifact is?

Thanks

Patrick.

PS: I tried uploading them as attachments but the size was too large even 
though I tried to crop things to keep the size to a minimum.

Thanks

Patrick.


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[Histonet] I just posted 2 photos to histosearch

2014-04-30 Thread Lewis, Patrick
Thanks everyone,

I just posted 2 images to histo search.  IS there a way to post up to 5 pics at 
once?  It looked like it suggested that you could post up to  5 pics as a group 
but I didn't see HOW to do it.

Anyway,  I have one post of outside of the tissue area, and one post of the 
tissue area.

What is this weird black precipitate?  I was using Red AEC as a substrate.

Patrick.


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[Histonet] Wierd hemotoxylin result on my macaque liver slide

2014-02-28 Thread Lewis, Patrick
Hi everyone.

I was staining a FFPE macaque liver tissue slide with hematoxylin the other 
day, and it had an odd appearance.

All the cells stained the usual way with the blue nuclear staining that you 
expect with hematoxylin.

But a few randomly scattered individual cells throughout the tissue stained a 
sharp nuclear dark black.

The cells are not clustered in any way, the cells have sharp black nuclear 
staining.  It's definitely not artifact.

Its not a cluster of lymphoid cells like you would see in inflammation.

What would cause seemingly random individual cells scattered throughout the 
tissue to stain black with just hematoxylin?

Just curious

Patrick.


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[Histonet] Replacment parts for a Stovall Belly dancer bench top shaker.

2014-01-03 Thread Lewis, Patrick
Hi everyone,

Does anyone know where I can get replacement parts for a Stovall Belly Dancer 
bench top shaker?

One of the 4 tubing legs has snapped near the base.  I might be able to 
jury-rig it with wire and duct tape, but it does have screws at each end of the 
tubing so It looks like the tubing legs should be replaceable.

Thanks

Patrick.




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[Histonet] Best place to Buy Slides boxes preferably True North.

2013-12-11 Thread Lewis, Patrick
Hi Everyone,

Can anyone tell me the cheapest place to get True North Slide boxes (100 slides 
purple box)

VWR has them for about $33.00 EACH.

We get a shipping discount with VWR but there has got to be a cheaper supplier.

Baring that, can anyone recommend a good 100 slide storage box.   Preferably in 
the $10-20.00 per box range.




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[Histonet] Questions about IHC in Frozen Sections

2013-12-05 Thread Lewis, Patrick
Hi Everyone.

I am trying to troubleshoot  my IHC on frozen sections.

My sections are human tonsil at 7 uM. On charged Superfrost slides.

They are stored at -80 after drying for 1 hour.

When I use them for IHC, I take them out of the -80 and let them air dry for 1 
hour before placing them in cold acetone for 30 minutes to fix.

Question:
If I place them directly in H20 or TBST pH 8.0 after fixation, will that cause 
cell lysis?

Should I dry the slides after acetone fixation before washing them?

If so, for how long?

My problem seems to be that the tissue is getting digested on the slide, I am 
trying to trouble shoot which step is causing my tissues to disintegrate.

So far I have tried thicker sections 10, 15 uM (That made the problem worse, I 
am consider going back to 4 uM sections)

I also Changed the concentration of H2O2 for my H202 block from 3% to 0.3%,
(In my next IHC attempt I will try to examine the slide at each step to see if 
I can see loss of integrity)

Also in my next attempt I plan to eliminate any H20 washes and dry the slide 
post acetone fixation before washing in TBST.

Also I plan to decrease the amount of Tween20 in my Wash buffer from 0.2% to 
0.02%.

Any advice would be helpful.

Patrick.




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[Histonet] Has anyone had any problems with the Vector Immuedge pap pen?

2013-11-14 Thread Lewis, Patrick
Hi everyone,

Has anyone had any problems with the Immedge Pap pen from Vector. Cat # H-4000

It gives a nice wide barrier, but for some reason the barrier is disintegrating 
on our slides so I get holes in the lines I draw.

I have had a similar problem before, usually because the slide wasn't dry 
enough when I was drawing the barrier or I was immersing the slide before the 
barrier had a chance to solidify.   However, the problem has never been this 
bad.  I am wondering if my current batch of pap pens is defective.

Patrick





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[Histonet] Can someone recommend a good labeling pen for cryotubes.

2013-10-23 Thread Lewis, Patrick
Hi everyone,

Can someone recommend a good pen to use to label cryo tubes.The VWR pens we 
have been using are apparently discontinued.

I would like something that writes as fine as an ultrafine sharpie, but is less 
likely to smear and is more long lasting, and solvent tolerant.

Thanks

Patrick.


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[Histonet] nanodrop of DNA preps from paraffin sections

2013-07-30 Thread Lewis, Patrick
Hi Everyone,

Just out of curiosity, what sort of nanodrop values do you typically get with 
DNA extractions from paraffin sections.

I usually get around 100 ng/uL, depending on tissue size, and the number of 
churls I take. Around 80% are 100 ng to 200 ng/uL.

Rarely, I get as high as 1000 ng/uL, 0-5% of the samples I take.
Occasionally I get 10-40 ng/uL 5-15% of the samples I take.

I primarily extract from tonsil, but I have done several other tissue types.

Patrick.

I also primarily use QIAgen Mini kits.


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[Histonet] Searching for HHV-7 antibody

2013-07-16 Thread Lewis, Patrick
HI everyone,

Does anyone know where to get 5E1 mouse monoclonal antibody directed against 
HHV-7 (pp85 protein complex)

We tried two suppliers but their product has been discontinued and now we can 
not seem to find it anywhere.

Thanks

Patrick.


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[Histonet] Can someone recommend a good means of storage for Cryomold blocks?

2013-05-17 Thread Lewis, Patrick
Hi everyone, can someone recommend a good storage method for Frozen tissue 
blocks made from cryomolds?  We have about 200 blocks.

Currently we have them stored freezer boxes in bags with some wet ice at -70.

It might be better if we had plastic tray bins to put the bags in, but I have 
not been able to find them yet.  Anyone have a catalog number for those gray 
tray bins?

Thanks

Patrick.


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[Histonet] Can anyone recommend a good Rabbit Isotype Control antibody

2012-08-29 Thread Lewis, Patrick
Hi Everyone,

Can anyone recommend a good Rabbit Isotype Control Antibody IgG1, to use as a 
negative control for my Polyclonal Rabbit antibodies.

I am looking at Biocompare and GenTex has one for about $220.00 for 100 ug. 
GTX47478

But if someone has one they've used and works well, I'd be interested.

Thanks

Patrick,

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[Histonet] Has anyone done ISH with fairly large FFPE sections?

2012-08-10 Thread Lewis, Patrick
Hi Everyone,

I am going to do some ISH for EBER  on FFPE sections, and I have some concerns 
on the logistics.

The kits I am looking at are for 50 rxns, and it seems like they expect to use 
20 uL probe per rxn.

My sections are rather large, covering about 2/3 of a standard slide.

How many uL will it take to make sure I get good coverage and have enough to 
avoid drying out the slide?

I plan to cover slip them and use a humidity chamber, but even still, I am 
worried that with such a small volume it don't be enough.

These kits are expensive, +$900.00 each and if I have to double/triple my rxn 
volume that would use up the kit in a hurry.

I haven't fully familiarized myself with the protocol yet, so maybe my concerns 
are unjustified, but if anyone has done some ISH, I'd appreciate any advice 
you'd care to give.

Thanks

Patrick.

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[Histonet] Preferences between kits for EBER

2012-08-10 Thread Lewis, Patrick
Hi Everyone,

Thanks for the response earlier.

Does anyone any advice on EBER ISH Kits? Specifically, if they had better 
results, or less problems with one brand vs another?
Right now I am considering both Novacastra's kit for 970.00 and Vector Labs kit 
for 905.00
Has anyone used these kits?   Has anyone tried a different kit they could 
recommend?

Thanks

Patrick.

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[Histonet] Antibodies to Mast cells for IHC help

2012-07-20 Thread Lewis, Patrick
Hi everyone.

Would anyone be able  anyone recommend a good antibody to stain mast cells in 
Human Tonsil for IHC?

These would be in FFPE (Formalin fixed paraffin embedded sections)

With secondary antibody hopefully being HRP labeled.
Substrate would most likely be DAKO AEC.

Thanks

Patrick Lewis

PS: If you have done this staining in the past and have a protocol, or antigen 
retrieval suggestions that would also be helpful.





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[Histonet] Antibodies to mast cells in human tonsil

2012-07-20 Thread Lewis, Patrick
Hi everyone,

That should read,

Would anyone able to recommend a good antibody to stain for only mast cells in 
human tonsil for IHC.

Thanks in advance.

Patrick Lewis



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[Histonet] H2O2 Recep

2012-07-13 Thread Lewis, Patrick
So what I'm gathering from all this.

Thanks by the way for the discussion.

Methanol is unnecessary for the H2O2, reaction, but it can make it slightly 
faster since both methods will be working in concert.   If you have tissue that 
has more peroxidase than usual, then extra time is required.

Also, If you use straight aq H2O2 on frozen sections the bubbling may damage 
the tissue.




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[Histonet] Methanol in H2O2 explanation

2012-07-10 Thread Lewis, Patrick
Hi everyone,

Can someone refresh/enlighten me as to why Methanol is used in H2O2 blocking.

Let's assume that I take my slides through the xylene/ethanol steps and that 
after the 70% etoh wash step, they are now in TBST.

I could see adding methanol if you were doing the H2O2 blocking as part of the 
xylene/etoh process and maybe you had the methanol as a substitute for the 70% 
etoh.

My xylene/ETOH looks like this.

3 x 5 min xylene.
2 x 5 min 100% etoh
2 x 5 min 95% etoh
1 x 5 min 70%
Then my slides are washed and then epitope retrieved.

After epitope retrieval they are again washed and then I do my H2O2 block 
without methanol.

Thanks

Patrick.




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[Histonet] Recommendations for HRP anti Rabbit and mouse and AEC substrates

2012-06-27 Thread Lewis, Patrick
Hi everyone,

I have been using DAKO Kits for HRP anti rabbit and HRP anti Mouse and AEC 
substrates.

I love DAKO, but their kits and reagents are expensive.

Can anyone offer an alternative for HRP labeled anti (Rabbit/Mouse) antibodies 
and AEC substrate kits.

I do all my IHC manually by hand.  I am doing my IHCs primarily on FFPE slides 
of various tissues, some of which are large enough that they
take up a lot of the slide, and hence need more drops to get complete coverage.

Thanks

Patrick.

PS: I am considering Vector Labs, and I am also looking at Biocompare to seek 
out more vendors.
  Has anyone tried Spring Bioscience's products?




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[Histonet] Coverslip removal question

2010-10-22 Thread Lewis, Patrick
Hi Histonetters

 

When I soak my slides in xylene to remove the coverslip, do I then need
to rehydrate them by washing them in 100% etoh,95% etoh,70% etoh, and
then H20.

And then drying and re applying permount?

 

Or can I go straight from xylene to drying to re-coversliping with
permount?

 

 

 

Patrick Lewis

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Seattle Children's Research Institute

206-884-1115  OFFICE 

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WWW seattlechildrens.org http://seattlechildrens.org/ 

 



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[Histonet] Recommendations for decal solution

2010-10-22 Thread Lewis, Patrick
Hi guys,

 

Can anyone recommend a good decal solution.  I have some bone marrow and
trachea tissues for paraffin sectioning and I want to decal them. 

Thanks

Patrick

 

 

Patrick Lewis

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Seattle Children's Research Institute

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[Histonet] decal solution help

2010-10-22 Thread Lewis, Patrick
Dear Histonetters

 

Yes I should have said, I'll be doing IHC for viral proteins with both
polyclonal (rabbit) and monoclonal (Rat/Mouse) primary antibodies and
HRP-labeled secondary antibodies with DAKO AEC Substrate.

 

 

Patrick Lewis

Research Associate II-Bench| Infections and Prematurity

Seattle Children's Research Institute

206-884-1115  OFFICE 

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[Histonet] I have a couple of quick questions

2010-10-14 Thread Lewis, Patrick
If I want to remove a cover slip that is coversliped with permount.  Do
I need to use xylene to get rid of the semi hardened permount gunk?

 

Also,  If I am heating paraffin sectioned slides overnight at 37C to
adhere them what happens if I over cook them by leaving them at 37C for
more than one day?

 

Say 3-4 days at 37C  It probably wont hurt them as they haven't been
epitope retrieved yet.

 

 

 

 

 

 

 

Patrick Lewis

Research Associate II-Bench| Infections and Prematurity

Seattle Children's Research Institute

206-884-1115  OFFICE 

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[Histonet] Sucrose cryoprotection

2010-09-23 Thread Lewis, Patrick
Hi Histoneters

 

Can someone explain sucrose cryoprotection to me.

 

Why/when is it necessary?

 

Tissue types that require it?

 

Potential benefits/problems with its use or not use?

 

 

Thanks.

 

Patrick

 

 

 

 

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[Histonet] NBF fixation and long term storage

2010-09-15 Thread Lewis, Patrick
I have some questions about Fixing tissues for paraffin embedding when
the ultimate purpose will be looking for viral antigens and cell surface
markers.

 

We have some monkey tissue that has been in NBF for over a year. and we
are just now processing them and embedding them in to paraffin.

 

We will be getting additional tissues from monkey necropsies and in an
effort to avoid epitope damage from prolonged exposure to NBF I was
wondering if anyone could recommend a fixation period.  (I.E. no longer
than 24 hours in NBF, 48 hours? ETC.

 

I was thinking of replacing the NBF (Neutral buffered Formalin) with 70%
Etoh.  And using 70% Etoh as long term storage of tissue parts.  The
ideal situation would be to get the tissues from necropsy the same day
of the necropsy and store the tissues overnight in NBF and then transfer
them to 70% etoh and then process them on the tissue processer after 24
hours in Etoh.  

 

I'm not sure how many animals I've eventually get and I'm a little
concerned over where we will put all the spare animal parts that I'm
sure I'll accumulate.

 

We don't want to throw anything away and for some tissues I'll have more
than I can put into a single cassette.

I may end up using more than 1 cassette for a single piece of tissue so
that I have backup cassettes of it.  

 

Anyone storing research tissues  has a suggestion about the best way to
store them when space is a premium.

 

Thanks 


Patrick.

 

 

Patrick Lewis

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[Histonet] Quick frozen sectioning and IMHC questions

2010-08-24 Thread Lewis, Patrick
Hi everyone,

 

I cut my first frozen sections, human tonsil, and I have stored them at
-70.  When I take them out to use, should I bring them to -20C and fix
them right away?  Or should I bring them to room temp and then pap
pen/wash/block/wash them then fix them before adding my primary
anti-body.

My original plan was/is to bring them to room temp, pap pen them and
then wash/block/wash fix.  I am asking for your advice as my boss is
away for two weeks and the protocol he left me with is a bit vague and
requires some modifications to fit the research that we are doing.

I was just wondering if there is a compelling reason to keep the
sections at/near -20 after sectioning up through the fixation before
starting the Immunohistochemistry.

Also, we are using BSA as one of the components in our blocking solution
as well as a component in our wash solution.  Is there a danger in using
lower/higher quality BSA?   I'm a little worried that our BSA might
contribute to increased background if its quality is not high enough.

The BSA we may use is A-8327 Sigma, and I am thinking this might be
better A3294, or one of these (A9647,A7906,A6793)

This is a new job for me, and its been a long while since I have done
any Immunohistochemistries.so I am going over the reagents we have on
hand while I refresh my memory on immunohistochemistry and sectioning
techniques.

 

Thanks for all your support

 

Patrick

 

 

Patrick Lewis

Research Associate II-Bench| Infections and Prematurity

Seattle Children's Research Institute

206-884-1115  OFFICE 

000-000-  PAGER

000-000-  CELL 

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[Histonet] Another quick sectioning question

2010-08-24 Thread Lewis, Patrick
When I was cutting my block I noticed some ribboning of the tissue.  Is
there a known cause (or several) for this.  I am wondering if my
microtome blade was too tight or too loose or if my block froze poorly,
or if I just needed to reorient my block .  I was cutting 7 um at -20.
Its human tonsil,  It's been a long time since I used a cryostat (we're
using a leicaCM3000).The ribboning almost disappeared when I changed
blades after cutting about 30 sections into the block.  But I still had
some ribboning of the tissue even though I was getting pretty clean OCT
slices away from the tissue.

 

Also, anyone have advice on disinfecting cryostats.  I will eventually
be cutting infectious tissues, HIV human samples and NHP macaques.  We
plan to follow Leicas disinfection procedure in which you bring the
cryostat to Room temp then spray with 5% Bleach let it sit for 10-20
minutes then wipe and spray with 70% ethanol and sit for 10 min then
wipe and spray with 100% ethanol. And drain and wipe.  Anyone have
advice on cleaning and if it's necessary to remove any portions of the
cryostat to facilitate cleaning.  I figure it will be a two to three day
process. To bring it to room temp, clean it, then bring it back down to
-20.  My main concerns are making sure its disinfected, and then making
sure we remove all the bleach so that we don't get corrosion.  

 

Thanks for all your help and advice.

 

Patrick.

 

Patrick Lewis

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206-884-1115  OFFICE 

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[Histonet] Greetings and IMHC Questions

2010-08-23 Thread Lewis, Patrick
Hello everyone,

 

My name is Patrick Lewis and I just started working for Children's Hospital in 
their Research Department.

 

It's been a long time since I've done any Immunohistochemistry, (~10 years), 
but in this new job, I will be doing a lot of it with both paraffin and frozen 
sections that I will make myself.

 

Anyway, I am about to try staining my first frozen slides and I have a couple 
of quick questions.  

 

 I cut some practice slides, human tonsil, and have stored them at -80 in a 
slide box.

How much longevity will they have?

 

I'd like to be able to cut slides and store them unfixed at -80 for up to one 
month until I use them

 

I know its better to use them the same day, but it would be nice to be able to 
cut them on one day and use them as needed

 

Also, is there a good place to find general IMHC procedures?   It's been a long 
time and I want to re-familiarize myself with some general protocols

 

 

I am using Superfrost Plus slides, but we may have some problems with the 
sections falling off the slide.  Does anyone have any suggestions on methods to 
avoid tissue loss from the slide?

 

 

Also, I am freezing my tissues in OCT in cryomolds that are lowered into an 
iso-pentane filled  ½ coke can which is immersed in a bucket of dry-ice for 5 
minutes.  .  I wanted to avoid using liquid nitrogen and am hoping that with 
the dry ice method I would still get good freezing of the block.  Are there any 
recommendations for OCT freezing?

 

Thanks for all your help.

 

Patrick.

 

 

Patrick Lewis

Research Associate II-Bench| Infections and Prematurity

Seattle Children's Research Institute

206-884-1115  OFFICE 

000-000-  PAGER

000-000-  CELL 

206-884-7311  FAX

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