Re: [Meep-discuss] Meep installation: Unbound variable: ctl-set-prompt!
On Aug 31, 2012, at 5:29 AM, Olf wrote: Dear all, I am just trying to install meep on an SLES cluster into my home folder. I installed all dependencies into $HOME/install and try to do the same for meep. I run the configure script with the following parameters: toInstall/meep-1.2 ./configure --with-libctl=$HOME/install/ --prefix=$HOME/install F77=gfortran CPPFLAGS=-I$HOME/install/include LDFLAGS=-L$HOME/install/lib When I run make, it seems still to use the libctl version /usr/share which is an old version: You probably need to use ./configure --with-libctl=$HOME/install/share/libctl GEN_CTL_IO=$HOME/install/gen-ctl-io Note that --with-libctl is the ...prefix/share/libctl directory, as described in the manual. (I added the GEN_CTL_IO just in case you didn't set your $PATH.) ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] meep installation
Hi, I had the same problem. I think if u put it in /usr/local/lib, when u installed meep by sudo , it already has some other version or something. I am not sure. Anyway, I installed BLAS and lapack on my desktop by myself, instead of sudo.. This is my memo when i installed lapack. U need to change some file before make. I do not remember exactly but I am sure you will figure it out. --- PLAT = lib # For gfortran compiler: SECOND and DSECND will use a call to the INTERNAL FUNCTION ETIME TIMER= INT_ETIME BLASLIB = /home/huangbin/Desktop/BLAS/libblas.a LAPACKLIB= $(PLAT)lapack.a TMGLIB = $(PLAT)tmglib.a EIGSRCLIB= $(PLAT)eigsrc.a LINSRCLIB= $(PLAT)linsrc.a dont add $(MAKE) by single, complex, or whatever --- When you configure MEEP, do ./configure --prefix=/home/huangbin/Desktop/meep-1.1.1_v1 --with-lapack=/home/huangbin/Desktop/lapack-3.2.1/liblapack.a I hope this helps. Best Regards, Bin Huang (Bryan) MIT Graduate Student '10 Computation for Design and Optimization (+65)98947649 From: 朱孔涛 [pku.kt...@gmail.com] Sent: Tuesday, November 09, 2010 9:50 AM To: Bin Huang Subject: Re: [Meep-discuss] meep installation Hi Bin, I have checked the libblas.a and liblapack.a respectively,using ar -t libblas.a. I find that libblas.a contains sgemm.o and liblapack.a contains cheev.o. Then i type: ./configure --with-blas=/usr/local/lib/libblas.a --with-lapack=/usr/local/lib/liblapack.a it says: checking for sgemm_ in /usr/local/lib/libblas.a... yes checking for cheev_ in /usr/local/lib/liblapack.a... no checking for cheev_... no checking for cheev_ in -llapack... no checking for cheev_ in -llapack_rs6k... no configure: error: LAPACK library not found Do you have any idea about this,please tell me. I would be very appreciate. Best regards. Zhu Kongtao 2010/11/9, 朱孔涛 pku.kt...@gmail.com: Hi Bin, Thanks for your answer. I have met another problem in installing harminv. I have installed BLAS and LAPACK, and put them both in /usr/local/lib. If i type: ls /usr/local/lib i get libblas.a liblapack.a But when i install harminv and type ./configure it says: checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_... no checking for cheev_ in -llapack... no checking for cheev_ in -llapack_rs6k... no configure: error: LAPACK library not found I don't understand why it can find blas but can't find lapack?And i have changed the liblapack.a to some other precompiled lapack libraries.I have tried a lot,and it still can't find the lapack library. Best regards. 2010/11/8, Bin Huang b...@mit.edu: Hi Kongtao, Yes I think you should. The auto installation of your OS isn't good enough to develop your own C++ programs. After you install meep by yourself, put test.cpp under meep-1.1.1/tests/. Follow the commands at the end of meep C++ tutorial. Best Regards, Bin Huang (Bryan) MIT Graduate Student '10 Computation for Design and Optimization (+65)98947649 From: 朱孔涛 [pku.kt...@gmail.com] Sent: Monday, November 08, 2010 9:57 AM To: Bin Huang Subject: Re: [Meep-discuss] meep installation hi,thanks for your answers.There is something i don't understand.I have already intalled meep using: sudo apt-get install meep h5utils. And i can use meep to run the *.ctl files. But if i use g++ e.g. g++ `pkg-config --cflags meep` test.cpp -o test `pkg-config --libs meep` it says i should add the directory containing meep.pc and it also can't find meep.hpp Should i install meep again using meep-1.1.1.tar.gz? Thanks. 2010/11/6, Bin Huang b...@mit.edu: Hi Kongtao, did you make sure that when you install meep, the hdf lib is included? This is what I needed to do. (I am running ubuntu.) env LDFLAGS=-L/home/huangbin/Desktop/harminv/lib:/usr/lib:/usr/local/lib:/home/huangbin/Desktop/lib env CPPFLAGS=-I/home/huangbin/Desktop/harminv/include:/usr/include:/usr/local/include:/home/huangbin/Desktop/include My hdf is installed on Desktop. So /home/huangbin/Desktop/lib and /home/huangbin/Desktop/include is where the hdf lib and header files are. Best Regards, Bin Huang (Bryan) MIT Graduate Student '10 Computation for Design and Optimization (+65)98947649 -- Zhu Kongtao -- Zhu Kongtao -- Zhu Kongtao ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] meep installation
Hi Kongtao, did you make sure that when you install meep, the hdf lib is included? This is what I needed to do. (I am running ubuntu.) env LDFLAGS=-L/home/huangbin/Desktop/harminv/lib:/usr/lib:/usr/local/lib:/home/huangbin/Desktop/lib env CPPFLAGS=-I/home/huangbin/Desktop/harminv/include:/usr/include:/usr/local/include:/home/huangbin/Desktop/include My hdf is installed on Desktop. So /home/huangbin/Desktop/lib and /home/huangbin/Desktop/include is where the hdf lib and header files are. Best Regards, Bin Huang (Bryan) MIT Graduate Student '10 Computation for Design and Optimization (+65)98947649 ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] meep installation
2010/11/5 朱孔涛 pku.kt...@gmail.com Hi everyone, I have a problem in meep installation.I have installed the file libhdf5-serial-1.6.6-0_1.6.6-4_i386.deb. You should also install corresponding -dev package. With best regards, Shawkat Nizamov ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] Meep Installation: Unable to install libctl
On Thu, 17 Jan 2008, shiv chawla wrote: I am trying to install libctl on cygwin in windows. But I have an error while ./configure saying in the end that linking to guile failed and guile couldnot be found.But I have checked and guile is installed there in /usr. I am attaching the config.log file for your review. I desperately need a solution as I want to use meep for my project.I have invested a lot of time in resolving this problem but still away from a solution. I thank you all in anticipation of a quick reply. Is it possible that you have multiple conflicting versions of Guile installed? The configure script found a guile-config in /usr/local/bin, but I'm guessing that Cygwin comes with guile installed in /usr (e.g. there is probably a /usr/bin/guile too). In general, whenever your system has prepackaged versions of a particular library, you want to use that prepackaged version unless you know what you are doing. For Cygwin, that means going to the Cygwin setup program and installing the guile-devel package from the Devel section. In your case, you may have messed up your Cygwin installation by installing multiple incompatible versions of the same program/library, so the easiest thing might be to reinstall Cygwin from scratch. Alternatively, install Debian or Ubuntu GNU/Linux and use the prepackaged Meep. Steven ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] MEEP installation problem
Looks like a guile/guile-devel version mismatch to me. Your install command failed because there was an existing version. Instead of yum install try yum update cheers Manoj Jiha Sung wrote: Dear MEEP Helper: Recently I have been trying to install MEEP and related interfaces into a Linux(Fedora 7). I followed the instructions in web pages and I think everything was installed. Summary of my MEEP installation procedure is listed at the end of this mail. However, when I tested the first example in the MEEP tutorial page (http://ab-initio.mit.edu/wiki/index.php/Meep_Tutorial ). I do not get the right output. I wrote the input, outputs, and error messages below. Can somebody tell me what is wrong? Input file (ex1.ctl); (reset-meep) (set! geometry-lattice (make lattice (size 16 8 no-size))) (set! geometry (list (make block (center 0 0) (size infinity 1 infinity) (material (make dielectric (epsilon 12)) (set! source (list (make source (src (make continuous-src (frequency 0.15))) (component Ez) (center -7 0 (set! pml-layers (list (make pml (thickness 1.0 (set! resolution 10) (run-until 200 (at-beginning output-epsilon) (at-end output-efield-z)) Output message: --- Initializing structure... Working in 2D dimensions. block, center = (0,0,0) size (1e+20,1,1e+20) axes (1,0,0), (0,1,0), (0,0,1) dielectric constant epsilon = 12 time for set_epsilon = 0.0223849 s --- creating output file ./ex1-eps-00.00.h5... creating output file ./ex1-ez-000200.00.h5... run 0 finished at t = 200.0 (4000 timesteps) Elapsed run time = 0.191832 s Deprecated error message: SCM_STRINGP is deprecated. Use scm_is_string instead. SCM_STRING_LENGTH is deprecated. Use scm_c_string_length instead. scm_must_malloc is deprecated. Use scm_gc_malloc and scm_gc_free instead. SCM_STRING_CHARS is deprecated. See the manual for alternatives. scm_must_free is deprecated. Use scm_gc_malloc and scm_gc_free instead. Outputs: ex1-eps-00.00.h5 looks O.K. ex1-ez-000200.00.h5 shows all 0's (when converted using h5totxt) Thanks in advance. Jiha Summary of MEEP installation (Jan. 8 – Jan. 12, 2007) For the functions of the programs to be installed, please read the MEEP installation page. (http://ab-initio.mit.edu/wiki/index.php/Meep_Installation ) 1. Installing guile (This installation is not difficult) In any root directories, % yum list | grep guile % yum install guile-devel.x86.64 % guile --version → It shows guile 1.8.1 is installed 2. Installing libctl (This installation is not difficult.) Downloaded “libctl-3.0.2.tar.tar” into /root/Download. In /root/Download, % tar –xvf libctl-3.0.2 % mv libctl-3.0.2 .. % cd /root/libctl-3.0.2 % ./configure (If there comes error messages “Permission denied”, then “configure” file should be made executable; % chmod 744 configure % chmod 744 install-sh ) % make % make install This produced “gen-ctl-io” in /usr/local/bin, “libctl.a”, “libctlgeom.a”, “libctlgeom.1a”, libctl.la” in /usr/local/lib “ctlgeom.h”, “ctl-geom-types.h”, “ctl.h” in /usr/local/include “gen-ctl-io.1” in /usr/local/man/man1 many files in /usr/local/share/libctl/base and /usr/local/share/libctl/utils 3. Installing hdf5 (This installation needs care.) I followed the instructions of SCI institute web page (http://software.sci.utah.edu/doc/Installation/Guide/osx/sec.sr_hdf5_build.html ). There are also instructions in CBLFS web pages (http://cblfs.cross-lfs.org/index.php/HDF5 and http://cblfs.cross-lfs.org/index.php/H5utils). % Downloaded “hdf5-1.6.6.tar.gz” into /root/Download In the /root/Download directory, % gunzip hdf5-1.6.6.tat.gz | tar xf % cd /root/hdf5-1.6.6 % CC=gcc % CXX=g++ % export CC CXX % ./configure --enable-threadsafe --with-pthread=/usr --prefix=/usr/local % make all % make install This produced files in /usr/local/bin, /usr/local/lib, /usr/local/doc. Finally, the followings are needed; check if there is a line /usr/local/lib in /etc/ld.so.conf and run /sbin/ldconfig. 4. Installing libpng and libpng-devel This is needed to install “h5toping” in h5utils package. “libpng” is usually installed in Linux systems, but the header files need to be installed through “libpng-devel”. % yum list | grep libpng (“libpng.x86_64” was already installed.) % yum install libpng-devel.x86_64 5. Installing h5utils (Once the installations
Re: [Meep-discuss] MEEP installation problem
Could you give more specific instruction as I am not familar with guile. In my system (Fedora 7), guile.x86-64 was installed when the system was set up. Then, I installed guile-devel.x86-64 this time using yum. These are for guile version 1.8.1. There are no more updates on this program. Don't you think since the installed guile is 64 bit version it does not match with other interfaces? If this is the case, will installing 32 bit version (guile.i386 ) help? Jiha Never miss a thing. Make Yahoo your home page. http://www.yahoo.com/r/hs___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] Meep installation error (floating point exception)
On Thu, 15 Feb 2007, btld123 wrote: I met a problem with the school computer while installing meep on it. It is a RH Fedora 6 32 bit machine. I don't have any problem with my home computer which is a 64 bit AMD Fedora 6 64 bits. When I run make check, it stops right after an error. The error seems a Floating point exception. The detail of it is copied below. Hope someone can help me. Thank you! Try configuring Meep with --enable-debug. If the problem still occurs, then you can use the debugger (gdb) to get a stack trace to say precisely where the error occurs. Steven ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
Re: [Meep-discuss] Meep installation problems: please help
On Fri, 13 Oct 2006, Ignazio Di Napoli wrote: I cannot make meep. When making the libctl subfolder, I get this error: My first guess is that you have more than one version of libctl installed, and the linker is trying to link to the old version and failing. e.g. you installed libctl-3.0.1 in /usr/local/lib from source, but you also have an older libctl in /usr/lib. This could happen if you are using Debian, for example, and you had installed the Debian MPB package. (Debian now has libctl-3.0.1, but only if you are using Debian/testing or Debian/unstable. If you use Debian/stable you could have libctl-2.2 in /usr/lib, which would cause the error you saw.) Cordially, Steven G. Johnson ___ meep-discuss mailing list meep-discuss@ab-initio.mit.edu http://ab-initio.mit.edu/cgi-bin/mailman/listinfo/meep-discuss
