Re: [ccp4bb] processing hd5 files from Dectris detector

2018-06-02 Thread Folmer Fredslund
Dear all, With respect to the usage of the XDSAPP program, it depends on the generate_XDS.INP script. For our local installation, I have edited the script to include the "LIB=/path/to/dectrisneggia.so" in the resulting XDS input file and this works as expected without any problems. This does depen

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-06-01 Thread Andreas Förster
Dear Laurent, sorry for getting into this discussion a bit late, but I was traveling. Many good points have been raised in response to your question. I'd like to summarize and add to them. 1. Your beamline scientist WILL know how to process the data, and if the software she recommends is not wh

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-06-01 Thread Didier Nurizzo
Hi All, I doubt it is on MASSIF-1, we still have a Pilatus3 2M, but I guess more on Massif-3 if collected at ESRF. People very often confuse between the two. Massif-1 is the fully automatic beamline and Massif-3 is the microfocus. Cheers. D On 01/06/2018 11:03, Harry Powell wrote: Hi La

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-06-01 Thread Harry Powell
Hi Didier Sorry about that - my mistake - it's an Eiger 4M detector, so I guess that would be MASSIF-3. Harry -- Dr Harry Powell Chairman of European Crystallographic Association SIG9 (Crystallographic Computing) On 1 Jun 2018, at 13:09, Didier NURIZZO wrote: > Hi All, > > I doubt it is

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-06-01 Thread Harry Powell
Hi Laurent has contacted me off-board about this and sent me an example of a CBF file extracted from the HDF5. As far as I can see, there is no problem with the CBF file created by eiger2cbf - it can be processed correctly by iMosflm, and the miniCBF header is not missing any of the informatio

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Kay Diederichs
Hi Laurent, this prompte a couple of questions - 1. where did you collect the data? 2. can this not be answered by the beamline staff? After all they should know their detector, and procedures for use of its data. 3. what are the exact error messages when using the neggia plugin? I guess Dectri

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Aaron Finke
__ De : CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] de la part de maveyrau [laurent.maveyr...@ipbs.fr] Envoyé : jeudi 31 mai 2018 14:58 À : CCP4BB@JISCMAIL.AC.UK Objet : [ccp4bb] processing hd5 files from Dectris detector Hi CCP4ers we recently collected many datasets on dectris detectors producing

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread SAVKO Martin
veyr...@ipbs.fr] Envoyé : jeudi 31 mai 2018 14:58 À : CCP4BB@JISCMAIL.AC.UK Objet : [ccp4bb] processing hd5 files from Dectris detector Hi CCP4ers we recently collected many datasets on dectris detectors producing hd5 files. I would like to use some auto processing tools to process them (xdsapp, xdsm

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Raghurama P Hegde
On Behalf Of maveyrau Sent: Thursday, May 31, 2018 18:29 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] processing hd5 files from Dectris detector Hi CCP4ers we recently collected many datasets on dectris detectors producing hd5 files. I would like to use some auto processing tools to process them

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Clemens Vonrhein
Dear Laurent, On Thu, May 31, 2018 at 02:58:52PM +0200, maveyrau wrote: > we recently collected many datasets on dectris detectors producing > hd5 files. I would like to use some auto processing tools to process > them (xdsapp, xdsme…). As far as I can say, xdsapp or xdsme cannot > process hd5 nat

Re: [ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread Harry Powell
Hi The first thing I would try is to process the HDF5 files directly with DIALS, which reads several different "dialects" of HDF5 (the wonderful thing about a standard format is that everyone implements their own idea of a standard...). If that doesn't work, I think you would need to provide mo

[ccp4bb] processing hd5 files from Dectris detector

2018-05-31 Thread maveyrau
Hi CCP4ers we recently collected many datasets on dectris detectors producing hd5 files. I would like to use some auto processing tools to process them (xdsapp, xdsme…). As far as I can say, xdsapp or xdsme cannot process hd5 natively. I tried to convert them to cbf format (eiger2cbf, hdf2mini-