ther send your RFS to
debian-scie...@lists.debian.org
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On Fri, Mar 23, 2018 at 05:17:01PM +0100, Sébastien Villemot wrote:
> Unfortunately that means that dh-r will no longer be fully functional offline
> (querying the local apt cache could be a fallback, but there's no guarantee
> that it is up-to-date, even when running unstable).
I no
Package: dh-r
Version: 20171201
X-Debbugs-CC: debia...@lists.debian.org
On Fri, Mar 23, 2018 at 05:12:09PM +0100, Andreas Tille wrote:
> On Fri, Mar 23, 2018 at 04:44:11PM +0100, Sébastien Villemot wrote:
> > Actually, I am wrong: epochs are very wrong for CRAN packages, because they
-dev libsuitesparse-doc
Architecture: source amd64 all
Version: 1:5.2.0+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
libamd2-
d, because upstream does
not currently support that possibility.
Best,
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Description:
libmatio-dev - MAT File I/O Library - development files
libmatio-doc - MAT File I/O Library - documentation files
libmatio4 - Library to read and write Matlab MAT files
Closes: 892874
Change
lies that r-cran-arm is a Depends. (Closes:
> > #877433)
> >...
>
> Thanks a lot for fixing this bug for unstable.
>
> It is still present in stretch, could you also fix it there?
> Alternatively, I can fix it for stretch if you don't object.
Please go ahead and
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
libmatio-dev - MAT File I/O Library - development files
libmatio-doc - MAT File I/O Library - documentation files
libmatio4 - Library to read and write Matlab MAT files
Changes:
libmat
y across packages is a necessity if we want
team-maintenance to become a reality.
Best,
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Description:
libglpk-java - Java binding to the GNU Linear Programming Kit
Changes:
glpk-java (1.12.0-1) unstable; urgency=medium
.
* New upstream version 1.12.0
* Bump to debhelper compat level 11.
* Update Vcs-* U
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
glpk-doc - linear programming kit - documentation files
glpk-utils - linear programming kit - utility files
libglpk-dev - linear programming kit - development files
libglpk40 - linear pro
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
r-cran-rsdmx - GNU R package for the Statistical Data and Metadata Exchange
(SDM
Changes:
r-cran-rsdmx (0.5.11+dfsg-1) unstable; urgency=medium
.
* New upstream version 0.5.11+dfsg
* Bump to debh
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
glpk-doc - linear programming kit - documentation files
glpk-utils - linear programming kit - utility files
libglpk-dev - linear programming kit - development files
libglpk40 - linear pro
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
r-cran-spam - GNU R functions for sparse matrix algebra
Changes:
r-cran-spam (2.1-2-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.1-2
* d/copyright: reflect upstream change
ess of the policy redirects to
the new.
Best,
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Description:
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clusteri
libvlfeat-doc - Computer vision library focussing on vis
Maintainers
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Description:
libnlopt-dev - nonlinear optimization library -- development package
libnlopt-guile0 - nonlinear optimization library -- Guile bindings
libnlopt0
Maintainer: Debian Science Maintainers
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Description:
lhapdf-ccwrap-doc - C++ Bindings for LHAPDF - documentation
lhapdf-pdfsets-minimal - Minimal PDF Sets of LHAPDF
liblhapdf-de
tribution.
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be happy to help.
Best,
On Tue, Oct 17, 2017 at 07:21:28PM +0200, Sébastien Villemot wrote:
> On Sun, Oct 15, 2017 at 08:09:52PM +0100, D Haley wrote:
>
> > Your suggestion was correct - I was not aware of the --git-pristine-tar
> > option. I don't think I would have found
org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
r-cran-msm - GNU R Multi-state Markov and hidden Markov models in continuous t
Changes:
r-cran-msm (1.6.5-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 1.6.5
* Bump to debhelper com
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
r-cran-lmertest - GNU R tests in Linear Mixed Effects Models
Changes:
r-cran-lmertest (2.0-36-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.0-36
* Bump debhelper compat
ers@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Description:
r-cran-dotcall64 - Enhanced Foreign Function Interface Supporting Long Vectors
Changes:
r-cran-dotcall64 (0.9-5.2-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 0.9-5
espite
the removal of the non-free files.
I guess you detected the free stub version of the file. Still the
debian/copyright is correct. So maybe this bug can be closed? Or do you have a
suggestion on how to better handle that case?
Best,
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On Wed, Nov 22, 2017 at 10:39:47AM +, PICCA Frederic-Emmanuel wrote:
> I will have a look at this maybe this week-end.
>
> thanks a lot for your contributions.
Actually I just made the upload. Thanks Antonio for your work.
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; Uid: Philip Rinn <ri...@inventati.org>
I gave you upload rights on the new package.
I also requested the removal of the old source package (#882401).
Best,
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e several people report that this package is
currently unusable.
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ld clearly be dealt with
separately.
I hope to implement them in a future upload (the first one being easier), but I
don't have an ETA. Of course patches are also welcome.
Best,
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lso need to remember to remove the old source package.
Best,
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On Sun, Nov 05, 2017 at 01:06:57PM +0100, Sébastien Villemot wrote:
> On Sun, Nov 05, 2017 at 12:26:12PM +0100, Philip Rinn wrote:
> > There are packages around outside Debian Science which
> > doesn't use r-*- as source package name.
>
> This is not true. Out of the 120 CRA
On Sun, Nov 05, 2017 at 12:26:12PM +0100, Philip Rinn wrote:
> Hi,
>
> On 05.11.2017 at 10:54, Sébastien Villemot wrote:
> > scatterplot3d is the only CRAN package maintained in Debian Science Team
> > whose
> > source package name does not begin with "r-cran&qu
ckage when making searches on source package names, and
also for consistency.
Best,
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On Thu, Oct 26, 2017 at 10:24:57AM +0200, Andreas Tille wrote:
> On Tue, Oct 24, 2017 at 02:17:26PM +0200, Sébastien Villemot wrote:
> > > (see build log[2]). My suspicion is that this is not really an error in
> > > the test suite but some problem with the autobui
lder? Could somebody
> please have a look? If not the only chance I see is to deactivate armhf
> for pandas.
pandas is uncompiled on armhf, so this is not a blocker for testing migration.
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mes possible to override this by passing --git-no-pristine-tar to
"gbp buildpackage", should you have a good reason for doing so).
Best,
P.S.: please don’t top-post.
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you forgot to pass the --git-pristine-tar option to gbp
buildpackage.
> Thanks, and apologies for taking up your time.
No worry, I’m happy to help.
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Descr
vI[[j]]) :
there is no package called 'arm'
Error: package or namespace load failed for 'mi'
>
Cheers,
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-lsmeans/20170723_010229/log.gz
multcompView does not appear to be packaged in Debian, so that should be done
first, then the package should be added as a test dependency in
debian/tests/control.
Cheers,
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≥ 1.1 is out.
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is wrong, you should
replace /cgit/ by /git/.
The Debian Science policy is also outdated on this issue, we should fix it.
Thanks,
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of git://)
- in d/copyright: same for the Format field (per policy 4.0.0)
- upgrading to Debhelper compat level 10 would be nice, though not strictly
needed
Best,
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Control: tags -1 = pending
Control: notforwarded -1
On Mon, Sep 18, 2017 at 01:56:23PM +0200, Sébastien Villemot wrote:
> On Thu, Sep 14, 2017 at 12:34:34PM +0200, Christian Borntraeger wrote:
> > On 09/14/2017 09:58 AM, Sébastien Villemot wrote:
> > > On Wed, Sep 13, 2017 a
Control: tags -1 upstream
Control: forwarded -1 https://github.com/xianyi/OpenBLAS/issues/1307
On Thu, Sep 14, 2017 at 12:34:34PM +0200, Christian Borntraeger wrote:
> On 09/14/2017 09:58 AM, Sébastien Villemot wrote:
> > On Wed, Sep 13, 2017 at 08:33:08PM +, PICCA Frederic-Emman
ons ?
I leave that to the s390 porters to answer.
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s://www.debian.org/releases/stable/s390x/ch02s01.html.en#idm45373715987328
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useless, because they provide the same C interface to BLAS than the
other BLAS implementations (libblas3, libatlas3-base, libopenblas-base), but
in a less optimized way;
- or making the two packages conflict.
Andreas (and others), what do you think?
Best,
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⣾⠁
On Sat, Sep 09, 2017 at 09:11:46PM +0200, Sébastien Villemot wrote:
> - completely dropping libcblas3 (and libcblas-dev). These two packages are
> actually useless, because they provide the same C interface to BLAS than the
> other BLAS implementations (libblas3, libatlas3-base, li
Breaks+Replaces relation.
>
> I have just uploaded a 3-day NMU to fix this; this package is causing
> problems in testing with the libgsl transition.
Thanks, I am about to upload your patch, along with a few other bugfixes.
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⣾⠁⢠⠒⠀⣿⡁ Debian Develope
and seems to work
with any BLAS/LAPACK implementation (see [1] for more details on BLAS/LAPACK
in Debian).
Cheers,
[1] https://wiki.debian.org/DebianScience/LinearAlgebraLibraries
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compiled fine.
Is this still an issue for you? Or can I close this bug report?
Best,
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eat. Note that the manpages are going to move into liblapack-doc
(formerly they were in liblapack-doc-man, I am merging the two packages
now that both of them are going to be smaller).
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`-
symlinks serve a
purpose: they correspond to the functions in the API of lapack, so that
one can do "man funcname" on all of them (several functions are
documented by the same manpage, hence the need for symlinks).
I think this is a reasonable compromise, and I hope this is ok with you
(bu
s upload of the 3 packages, first to
experimental.
Cheers,
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aults
> discussed earlier in the bugreport. I haven't tested julia or this
> specific test yet though.
>
> https://github.com/xianyi/OpenBLAS/pull/1178
Thanks a lot James. I am going to test it on the Debian package and
apply it if it fixes the issue with julia.
Cheer
Package: src:atlas
Severity: wishlist
Everything is in the subject…
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the discussion in
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the discussion in
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Package: src:freefem++
Version: 3.46+dfsg1-2
Severity: serious
Dear Maintainer,
freefem++ FTBFS on most release arches (only armel was successful on build
daemons).
The build timeouts during the testsuite.
I have a similar issue on a local amd64 chroot.
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zeros and spaces.
The library consists of efficient conversion routines that have been
extracted from the V8 JavaScript engine. The code has been refactored
and improved so that it can be used more easily in other projects.
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Le samedi 16 janvier 2016 à 19:24 +0100, Matthias Klose a écrit :
> On 16.01.2016 18:00, Sébastien Villemot wrote:
> > I was aware of the failure but decided to nevertheless add that
> > testsuite as an autopkgtest, in order to make the test failures
> more visible.
>
&g
ld make the autopkgtest more verbose by printing the test summary.
But that summary can be seen anyways in the build log (since the testsuite is
also run at build time).
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Le lundi 14 décembre 2015 à 11:47 +0100, Rafael Laboissiere a écrit :
> I updated the xmds2 package in Git (commit 479917b) for using libgsl-dev
> instead of libgsl0-dev. Please, upload it to unstable.
Thanks. Uploaded.
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ntfix.
Ack. Thanks for your feedback.
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Package: wnpp
Severity: wishlist
Owner: "Sébastien Villemot" <sebast...@debian.org>
X-Debbugs-CC: debian-science-maintainers@lists.alioth.debian.org
* Package name: r-cran-xlconnect
Version : 0.2.11
Upstream Author : Martin Studer <martin.stu...@mirai-s
Control: tags -1 + upstream
Control: forwarded -1 http://icl.cs.utk.edu/lapack-forum/viewtopic.php?t=4808
Dear Madlene,
Le samedi 03 octobre 2015 à 11:45 +0200, Sébastien Villemot a écrit :
> Le lundi 05 janvier 2015 à 17:48 +0100, Madlene Nussbaum a écrit :
> > Some computations
pt
- from the octave prompt, trigger the crash. You should be given back a
gdb prompt
- type "backtrace" at the gdb prompt, and send the output to this
bugreport
Thanks,
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.
Could you possibly send me the RData file by e-mail?
Best,
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Control: tags -1 + patch
Le samedi 26 septembre 2015 à 21:45 +0200, Sébastien Villemot a écrit :
> On Mon, 27 Jul 2015 10:55:40 +0200 Sébastien Villemot wrote:
> > Package: src:yade
> > Version: 1.14.0-5
>
> > Your package fails to build against suitesparse 4.4
s file created in debian/rules, as
mentionned by kibi. This looks very ugly. Is this hack really necessary?
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of the
Debian Science Team) when the suitesparse transition starts?
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Control: clone -1 -2
Control: reassign -2 libeigen3-dev 3.2.5-4
Control: found -2 3.3~alpha1-1~exp2
Control: retitle -2 CholmodSupport.h uses UF_long which has been removed in
SuiteSparse 4.4
On Mon, 27 Jul 2015 10:55:40 +0200 Sébastien Villemot wrote:
> Package: src:yade
> Version: 1.
Le samedi 26 septembre 2015 à 12:00 -0700, Dima Kogan a écrit :
> Sébastien Villemot <sebast...@debian.org> writes:
>
> > Is there any good reason why you uploaded the fixed package to
> > experimental instead of unstable?
> >
> > Is it ok for you if I
,
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- Copying COW directory
forking: rm -rf /var/cache/pbuilder/build//cow.7321
forking: cp -al /var/cache/pbuilder/base-sid-amd64.cow
/var/cache/pbuilder/build//cow.7321
I
Control: severity -1 important
Dear Martin and Edmund,
Le mercredi 01 juillet 2015 à 21:36 -0400, Martin Michlmayr a écrit :
* Sébastien Villemot sebast...@debian.org [2015-05-01 12:39]:
make[3]: Entering directory '/«PKGBUILDDIR»/build/atlas-base/lib'
mkdir tmp
cd tmp \
ar
-deterministic.
Yes, the build system of atlas is just a nightmare.
Tagging as unreproducible for the time being.
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Description
(It did build, clearly, on 2015-01-29 on arm-linaro-01. What might
have changed since then?)
ATLAS is a very delicate beast so anything is possible.
Can you please provide me with the full build log? On which machine did
you try the compilation?
Cheers,
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. This file does not exist in the
source tarball, and is generated by cmake at build time. So it seems
that cmake has to be used as a build system, or alternatively that this
file has to be generated by hand.
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occur on real 586 hardware, or
in a VM?
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very often and has few reverse dependencies.
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package. See
https://www.debian.org/Bugs/Reporting for details about the bug
reporting procedure.
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Team acknowledgement beforehand. Could you please take
care of that?
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that the root of the problem
should be looked for.
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debian-science
request will
probably go unnoticed by the maintainer (whom I've put in CC) or will be
forgotten.
Bug reporting instructions are there:
https://www.debian.org/Bugs/Reporting
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for some discussion about this issue. If
you have suggestions about the right way of converting those packages to
multiarch, they are of course welcome.
Cheers,
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3.10.2-4
currently in testing. Some change in the build dependencies or in the build
environment revealed it.
I'll upload a fix soon.
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), I cannot
reproduce any problem.
I have the same issue for octave (see #760271). Raising to severity
serious and adding blocked bugs.
Thanks for investigating this issue.
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of atlas to avoid this problem.
This report is a duplicate of #628104, #697431 and #731960. Closing
accordingly.
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Le 2014-11-03 13:25, Mauricio Faria de Oliveira a écrit :
Hi Sébastien,
On 10/28/2014 05:14 PM, Sébastien Villemot wrote:
Thanks Mauricio for your work. It looks much better now, and I will
definitely ask the Release Team for getting this into Jessie (probably
in a few days though).
Sorry
for authorizing an upload?
Thanks Mauricio for your work. It looks much better now, and I will
definitely ask the Release Team for getting this into Jessie (probably
in a few days though).
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obtain the permission of the Release
Team to upload this patch to jessie; simplifying this patch as much as
possible will increase the possibility of having this happening.
Thanks,
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calculated results). If
you are aware of such fixes that are incorporated into 0.2.12, you can
either tell me or open new bugs against openblas (linking to upstream
bug reports and commits).
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by /usr/lib/libopenblas.so.0 (which has
a different SONAME).
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was dropped in gfortran 4.9 (it is
still accepted but does nothing), and this option was required to make
the tests pass.
I am now investigating why this option was needed in the first place,
and how to work around this removal.
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