skorper merged PR #170:
URL: https://github.com/apache/incubator-sdap-nexus/pull/170
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RKuttruff opened a new pull request, #171:
URL: https://github.com/apache/incubator-sdap-nexus/pull/171
Set to be the length of the matches passed as results.
Ran a quick test and it seems to be working (not null anymore and equal to
number of matches returned)
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tloubrieu-jpl commented on PR #170:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/170#issuecomment-1176812055
> Can you update the changelog? We are trying to keep the changelog up to
date as a new thing
Hi @skorper , I updated the changelog. Thanks that is a good improvem
ngachung merged PR #6:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/6
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wphyojpl opened a new pull request, #6:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/6
- also added CLI script to ingest data
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dependabot[bot] opened a new pull request, #54:
URL: https://github.com/apache/incubator-sdap-mudrod/pull/54
Bumps [elasticsearch](https://github.com/elastic/elasticsearch) from 5.2.0
to 6.8.17.
Release notes
Sourced from https://github.com/elastic/elasticsearch/releases";>elastics
tloubrieu-jpl opened a new pull request, #170:
URL: https://github.com/apache/incubator-sdap-nexus/pull/170
2 bugs that I missed to push before I merged the PR
https://github.com/apache/incubator-sdap-nexus/pull/162
The deployment of the helm chart fails without these fixes.
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tloubrieu-jpl opened a new pull request, #169:
URL: https://github.com/apache/incubator-sdap-nexus/pull/169
I created the report on a branch, markdown is easier to edit on github...
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ngachung merged PR #5:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/5
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wphyojpl opened a new pull request, #5:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/5
- While lambda infrastructure is being tested in JPL cloud, CLI can be used
to ingest files from personal laptop or from a different EC2 instance in AWS.
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dependabot[bot] commented on PR #164:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/164#issuecomment-1162608986
Superseded by #168.
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dependabot[bot] closed pull request #164: Bump numpy from 1.17.0 to 1.21.0 in
/integrations/python-client
URL: https://github.com/apache/incubator-sdap-nexus/pull/164
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dependabot[bot] opened a new pull request, #168:
URL: https://github.com/apache/incubator-sdap-nexus/pull/168
Bumps [numpy](https://github.com/numpy/numpy) from 1.17.0 to 1.22.0.
Release notes
Sourced from https://github.com/numpy/numpy/releases";>numpy's releases.
v1.22.0
dependabot[bot] closed pull request #58: Bump numpy from 1.15.4 to 1.21.0 in
/granule_ingester
URL: https://github.com/apache/incubator-sdap-ingester/pull/58
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dependabot[bot] commented on PR #58:
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Superseded by #59.
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dependabot[bot] opened a new pull request, #59:
URL: https://github.com/apache/incubator-sdap-ingester/pull/59
Bumps [numpy](https://github.com/numpy/numpy) from 1.15.4 to 1.22.0.
Release notes
Sourced from https://github.com/numpy/numpy/releases";>numpy's releases.
v1.22.0
ngachung merged PR #167:
URL: https://github.com/apache/incubator-sdap-nexus/pull/167
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dependabot[bot] opened a new pull request, #58:
URL: https://github.com/apache/incubator-sdap-ingester/pull/58
Bumps [numpy](https://github.com/numpy/numpy) from 1.15.4 to 1.21.0.
Release notes
Sourced from https://github.com/numpy/numpy/releases";>numpy's releases.
v1.21.0
dependabot[bot] opened a new pull request, #57:
URL: https://github.com/apache/incubator-sdap-ingester/pull/57
Bumps [aiohttp](https://github.com/aio-libs/aiohttp) from 3.7.2 to 3.7.4.
Release notes
Sourced from https://github.com/aio-libs/aiohttp/releases";>aiohttp's
releases.
dependabot[bot] opened a new pull request, #56:
URL: https://github.com/apache/incubator-sdap-ingester/pull/56
Bumps [aiohttp](https://github.com/aio-libs/aiohttp) from 3.6.2 to 3.7.4.
Release notes
Sourced from https://github.com/aio-libs/aiohttp/releases";>aiohttp's
releases.
dependabot[bot] opened a new pull request, #53:
URL: https://github.com/apache/incubator-sdap-ingester/pull/53
Bumps [pyyaml](https://github.com/yaml/pyyaml) from 5.3.1 to 5.4.
Changelog
Sourced from https://github.com/yaml/pyyaml/blob/master/CHANGES";>pyyaml's
changelog.
5.
dependabot[bot] opened a new pull request, #54:
URL: https://github.com/apache/incubator-sdap-ingester/pull/54
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.2 to 1.26.5.
Release notes
Sourced from https://github.com/urllib3/urllib3/releases";>urllib3's
releases.
dependabot[bot] opened a new pull request, #55:
URL: https://github.com/apache/incubator-sdap-ingester/pull/55
Bumps [pyyaml](https://github.com/yaml/pyyaml) from 5.3.1 to 5.4.
Changelog
Sourced from https://github.com/yaml/pyyaml/blob/master/CHANGES";>pyyaml's
changelog.
5.
tloubrieu-jpl merged PR #52:
URL: https://github.com/apache/incubator-sdap-ingester/pull/52
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JordanGethers commented on PR #166:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/166#issuecomment-1160567896
When I run the code in my linux environment, there are some harmless warning
messages (pertaining to numPy and occasionally variable conversion) I wanted to
ask for appr
JordanGethers opened a new pull request, #166:
URL: https://github.com/apache/incubator-sdap-nexus/pull/166
cdms_reader.py is the original doms_reader.py code with additional
functionality provided for the user to make each run of the program more
customizable. The user may now select, with
dependabot[bot] opened a new pull request, #9:
URL: https://github.com/apache/incubator-sdap-nexusproto/pull/9
Bumps [protobuf](https://github.com/protocolbuffers/protobuf) from 3.2.0 to
3.15.0.
Release notes
Sourced from https://github.com/protocolbuffers/protobuf/releases";>proto
skorper opened a new pull request, #165:
URL: https://github.com/apache/incubator-sdap-nexus/pull/165
- Fixed openapi issues that was causing unusual swagger behavior
- Updated `/domslist` to use AWS insitu datasets rather than DOMS
- Updated `matchup_spark` to use the above endpoint so
dependabot[bot] opened a new pull request, #163:
URL: https://github.com/apache/incubator-sdap-nexus/pull/163
Bumps [urllib3](https://github.com/urllib3/urllib3) from 1.25.3 to 1.26.5.
Release notes
Sourced from https://github.com/urllib3/urllib3/releases";>urllib3's
releases.
dependabot[bot] opened a new pull request, #164:
URL: https://github.com/apache/incubator-sdap-nexus/pull/164
Bumps [numpy](https://github.com/numpy/numpy) from 1.17.0 to 1.21.0.
Release notes
Sourced from https://github.com/numpy/numpy/releases";>numpy's releases.
v1.21.0
tloubrieu-jpl merged PR #162:
URL: https://github.com/apache/incubator-sdap-nexus/pull/162
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ngachung merged PR #4:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/4
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tloubrieu-jpl opened a new pull request, #162:
URL: https://github.com/apache/incubator-sdap-nexus/pull/162
Implementation of a redirection feature which enable to seamlessly present
collections hosted by alternate SDAP as provided by a main SDAP.
This pull request requires
https://g
tloubrieu-jpl opened a new pull request, #52:
URL: https://github.com/apache/incubator-sdap-ingester/pull/52
This pull request enable to support the configuration of the remote
collections in collection-config configmap. See
https://issues.apache.org/jira/browse/SDAP-388
In addition,
ngachung merged PR #3:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3
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wphyojpl opened a new pull request, #4:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/4
- new pagination idea imitating Elasticsearch's search_after
- limit number of spark executors for each Flask node + scaling nodes
accordingly.
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wphyojpl commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r894765655
##
k8s_spark/parquet.spark.helm/values.yaml:
##
@@ -110,8 +120,19 @@ affinity: {}
# initialDelaySeconds: 5
bitnami-spark:
+ enabled: true
wphyojpl commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r894764676
##
k8s_spark/parquet.spark.helm/templates/deployment.yaml:
##
@@ -57,8 +57,10 @@ spec:
{{- end }}
- name: parquet_file
skorper merged PR #161:
URL: https://github.com/apache/incubator-sdap-nexus/pull/161
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skorper opened a new pull request, #161:
URL: https://github.com/apache/incubator-sdap-nexus/pull/161
Fixed failing matchup test. Matchup now uses 'lon' instead of 'x', which I
forgot to update in the unit tests.
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skorper merged PR #160:
URL: https://github.com/apache/incubator-sdap-nexus/pull/160
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ngachung opened a new pull request, #160:
URL: https://github.com/apache/incubator-sdap-nexus/pull/160
For matchup validation, CDMS team would like to use
https://doms.coaps.fsu.edu/ws/search/samos_cdms which has additional variables.
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briansaildrone commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r891543369
##
k8s_spark/parquet.spark.helm/values.yaml:
##
@@ -110,8 +120,19 @@ affinity: {}
# initialDelaySeconds: 5
bitnami-spark:
+ enabled
ngachung merged PR #158:
URL: https://github.com/apache/incubator-sdap-nexus/pull/158
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skorper commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1144320844
@ngachung Updated!
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ngachung commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1144304337
Let's go with a single top level changelog. Not sure that component level
changelog will get enough attention.
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skorper commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1144299359
@ngachung I added two changelogs -- one for `data-access` and one for
`analysis`. I'm not sure if we want to do it this way or do a single changelog
for the entire repo due to
briansaildrone commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r887366919
##
k8s_spark/parquet.spark.helm/values.yaml:
##
@@ -110,8 +120,19 @@ affinity: {}
# initialDelaySeconds: 5
bitnami-spark:
+ enabled
briansaildrone commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r887334513
##
k8s_spark/parquet.spark.helm/templates/deployment.yaml:
##
@@ -57,8 +57,10 @@ spec:
{{- end }}
- name: parque
wphyojpl commented on code in PR #3:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3#discussion_r887309479
##
k8s_spark/parquet.spark.helm/values.yaml:
##
@@ -110,8 +120,19 @@ affinity: {}
# initialDelaySeconds: 5
bitnami-spark:
+ enabled: true
skorper merged PR #159:
URL: https://github.com/apache/incubator-sdap-nexus/pull/159
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skorper commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1136492386
Tested with the insitu API now that the parallel issue has been resolved --
it's working now. The following request:
```
{{big_data_url}}/match_spark?primary=MUR25-J
ngachung merged PR #152:
URL: https://github.com/apache/incubator-sdap-nexus/pull/152
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skorper opened a new pull request, #159:
URL: https://github.com/apache/incubator-sdap-nexus/pull/159
Fixed failing NetCDF matchup. Tested like so:
```
{{big_data_url}}/domsresults?id=99a4c9ae-2b7f-4fd8-a0be-26cbcb69b84c&output=NETCDF
```
Result is as expected. Implemente
dependabot[bot] opened a new pull request, #53:
URL: https://github.com/apache/incubator-sdap-mudrod/pull/53
Bumps [gson](https://github.com/google/gson) from 2.8.4 to 2.8.9.
Release notes
Sourced from https://github.com/google/gson/releases";>gson's
releases.
Gson 2.8.9
briansaildrone opened a new pull request, #3:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/3
* Added notes to values.yaml for enabling AWS EKS IRSA
* Notes reflect the general configuration that appears to be working for us
* Allowed for ClusterIP k8s servi
joshgarde opened a new pull request, #51:
URL: https://github.com/apache/incubator-sdap-ingester/pull/51
Initial reprocess pipeline work for converting non-standard datasets to CF
standard forms. Unit tests are unfinished.
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skorper commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1124171764
@skorper This is currently blocked by an issue with 504 errors when rapidly
hitting the CDMS insitu API. @wphyojpl is looking into this issue.
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ngachung merged PR #2:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/2
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briansaildrone commented on code in PR #2:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/2#discussion_r869729677
##
k8s_spark/parquet.spark.helm/templates/secret.yaml:
##
@@ -1,9 +1,11 @@
+{{ with .Values.aws_creds }}
apiVersion: v1
kind: Secret
ty
wphyojpl commented on code in PR #2:
URL:
https://github.com/apache/incubator-sdap-in-situ-data-services/pull/2#discussion_r869723629
##
k8s_spark/parquet.spark.helm/templates/secret.yaml:
##
@@ -1,9 +1,11 @@
+{{ with .Values.aws_creds }}
apiVersion: v1
kind: Secret
type: Op
briansaildrone opened a new pull request, #2:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/2
* Nested the `bitnami-spark` helm chart within `parquet-spark-helm`
* Allows for single command deployment of both helm charts and single
location for values
* Rem
wphyojpl commented on PR #158:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/158#issuecomment-1100243672
Hi @skorper
So, I created this URL from the example in the description:
```
https://doms.jpl.nasa.gov/insitu/1.0/query_data_doms_custom_pagination?startIndex=0&i
skorper opened a new pull request, #158:
URL: https://github.com/apache/incubator-sdap-nexus/pull/158
In this PR, I've integrated the AWS Parquet insitu API to the matchup
algorithm.
Please be aware that the insitu API is very slow as of now, so we may want
to hold off on merging/de
tloubrieu-jpl merged PR #156:
URL: https://github.com/apache/incubator-sdap-nexus/pull/156
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ngachung merged PR #157:
URL: https://github.com/apache/incubator-sdap-nexus/pull/157
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skorper commented on PR #157:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/157#issuecomment-1089408823
In addition to ICOADS, I've also fixed the SAMOS doms insitu endpoint as
part of this branch
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skorper opened a new pull request #157:
URL: https://github.com/apache/incubator-sdap-nexus/pull/157
Updated ICOADS url to `http://rda-work.ucar.edu`
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ngachung merged pull request #1:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/1
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kevinmarlis commented on pull request #156:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/156#issuecomment-1071770069
I temporarily deployed a test web app image to AQACF with the code changes.
I tested on a dataset known to fail the time series algorithm when using a
large bou
kevinmarlis commented on pull request #156:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/156#issuecomment-1071770069
I temporarily deployed a test web app image to AQACF with the code changes.
I tested on a dataset known to fail the time series algorithm when using a
large bou
kevinmarlis opened a new pull request #156:
URL: https://github.com/apache/incubator-sdap-nexus/pull/156
Apache ticket: [SDAP-318](https://issues.apache.org/jira/browse/SDAP-318)
This updates the timeSeriesSpark algorithm to use the bounding box (instead
of polygon) to perform spatia
ngachung merged pull request #153:
URL: https://github.com/apache/incubator-sdap-nexus/pull/153
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skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1064705140
@ngachung This PR is ready for review, all feedback has been incorporated.
Sample output:
```
product_version,1.0
Conventions,"CF-1.6, ACD
tloubrieu-jpl merged pull request #154:
URL: https://github.com/apache/incubator-sdap-nexus/pull/154
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skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1063766212
Latest CSV:
(icoads is down so I used spurs2 as the secondary dataset instead)
```
product_version,1.0
Conventions,"CF-1.6, ACDD-1.3"
title,CDM
skorper commented on a change in pull request #155:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/155#discussion_r822232997
##
File path: tools/deletebyquery/deletebyquery.py
##
@@ -160,16 +161,15 @@ def do_solr_query(query):
break
else:
frankinspace commented on a change in pull request #155:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/155#discussion_r86270
##
File path: tools/deletebyquery/deletebyquery.py
##
@@ -160,16 +161,15 @@ def do_solr_query(query):
break
else:
skorper opened a new pull request #155:
URL: https://github.com/apache/incubator-sdap-nexus/pull/155
* Improved speed of deletebyquery tool by moving cassandra delete to each
solr page delete
* Added `-f` and `--force` flag that will skip the prompts before deleting
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skorper edited a comment on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1049300659
Updated CSV header to use CF standard name, if available. Otherwise, the
variable name will be used.
Examples (without metadata):
MUR -> icoads
skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1049300659
Updated CSV header to use CF standard name, if available. Otherwise, the
variable name will be used.
Examples (without headers):
MUR -> icoads
jasonmlkang opened a new pull request #154:
URL: https://github.com/apache/incubator-sdap-nexus/pull/154
This should fix the issue in data-in-bounds api endpoint
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skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1049126719
I have updated this branch to only include variables that are in the DOMS
result. I also added a unit test.
Here's the new output:
```csv
id,x,y,so
skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1043710575
We may want to consider changing the format of this output CSV file. It
seems the columns are hardcoded with variables (similar to how the JSON was
hardcoded before
skorper commented on pull request #153:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/153#issuecomment-1043709722
@ngachung FYI
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skorper opened a new pull request #153:
URL: https://github.com/apache/incubator-sdap-nexus/pull/153
Apache ticket: [SDAP-366](https://issues.apache.org/jira/browse/SDAP-366)
These changes fix the CSV output for matchup. The issue was that
`doms.ResultStorage` was using the old json
joshgarde opened a new pull request #152:
URL: https://github.com/apache/incubator-sdap-nexus/pull/152
Fixes bug where a deselected parameter appears in queries
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skorper closed pull request #151:
URL: https://github.com/apache/incubator-sdap-nexus/pull/151
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skorper commented on pull request #151:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/151#issuecomment-1022607116
This work is going to be implemented at a later date.
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tloubrieu-jpl commented on pull request #48:
URL:
https://github.com/apache/incubator-sdap-ingester/pull/48#issuecomment-1018723859
Hi @jasonmlkang , are you still working on this pull request ?
I think you were trying to deploy that on your laptop to test from
completelly the new featu
skorper edited a comment on pull request #151:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/151#issuecomment-1015860092
@ngachung Re-ran the benchmarks on a larger L2 request.
```
{{big_data_url}}/match_spark?primary=ASCATB-L2-Coastal&startTime=2017-02-27T12:03:16Z&e
skorper commented on pull request #151:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/151#issuecomment-1015860092
Re-ran the benchmarks on a larger L2 request.
```
{{big_data_url}}/match_spark?primary=ASCATB-L2-Coastal&startTime=2017-02-27T12:03:16Z&endTime=2017-02-28
ngachung merged pull request #149:
URL: https://github.com/apache/incubator-sdap-nexus/pull/149
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wphyojpl opened a new pull request #1:
URL: https://github.com/apache/incubator-sdap-in-situ-data-services/pull/1
- using Kubernetes Spark server
- adding Helm chart for Parquet Flask server
- Multiple new features on the flask server
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skorper opened a new pull request #151:
URL: https://github.com/apache/incubator-sdap-nexus/pull/151
[SDAP-362](https://issues.apache.org/jira/browse/SDAP-362)
### Changes made
Updated tiles to new format.
- Updated gridded tiles so they are reformatted to be in a swath
skorper commented on pull request #149:
URL:
https://github.com/apache/incubator-sdap-nexus/pull/149#issuecomment-998220337
Could we also populate the `secondary` field with satellite + insitu
datasets retrieved from the `/domslist` endpoint?
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ngachung merged pull request #150:
URL: https://github.com/apache/incubator-sdap-nexus/pull/150
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skorper opened a new pull request #150:
URL: https://github.com/apache/incubator-sdap-nexus/pull/150
https://issues.apache.org/jira/browse/SDAP-364
Bump Solr version to address log4j vulnerability. Pushed bumped solr image
to dockerhub: `nexusjpl/solr:8.11.1`
Note: This has no
joshgarde opened a new pull request #149:
URL: https://github.com/apache/incubator-sdap-nexus/pull/149
Update SwaggerUI API documentation to display datasets available on the
current Nexus node dynamically and independent of the API specification via a
SwaggerUI plugin
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ngachung merged pull request #148:
URL: https://github.com/apache/incubator-sdap-nexus/pull/148
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