Re: [Fink-users] DNA sequence viewer

Thanks very much for the help. Staden is just what I need - in fact it looks excellent and I can't believe I didn't find it earlier! Cheers, David. On Thursday, December 12, 2002, at 01:23 AM, andy law (RI) wrote: David, Staden is what you want/need. Free to academics. Home page is at

Re: [Fink-users] recent tcltk update wreaking havoc upon my life

[EMAIL PROTECTED] wrote: [] Update to tcltk broke several things, and after I recompiled python (to fix Tkinter), blt, and a few others I realized I should have also run fix-fink. When I do this I get the message: Some of your installed packages were linked against an outdated version of libSy

[Fink-users] recent tcltk update wreaking havoc upon my life

This is a plea for help. I'm running into this problem on four different computers now so I am wondering if it is ubiquitous. I am one step away from throwing it all into the fire and starting fink again from scratch. % fink --version Package manager version: 0.11.1 Distribution version: 0.5.

Re: [Fink-users] 0.5.0a installation issues

On 11.12.2002 18:00 Uhr, "Daniel Lord" <[EMAIL PROTECTED]> wrote: > It appears, judging from the error message, that your syntax in the > .cshrc is not correct but I cannot be sure because I haven't seen it. well actually the file only contains one single line. and I did exactly what the install

Re: [Fink-users] qt3-3.0.5-8 compile error

On Wed, 2002-12-11 at 15:21, Nathan Dunn wrote: > cc1obj: Invalid option `-frename-registers' > make[2]: *** [.obj/release-shared-mt/libmng_callback_xs.o] Error 1 As far as I know, the -frename-registers option has been in the dev tools for all of the Jaguar releases. Have you installed the July

[Fink-users] qt3-3.0.5-8 compile error

When installing qt3-3.0.5-8, I continually get an error complaining about -frename-registers. I am on 10.2.2 and have the updated development tools and gcc 3. There error after "fink install qt3": cc -c -fPIC -fno-common -pipe -Ddlsym=dlsym_auto_underscore -fno-exceptions -Wall -W -Os -frename

Re: [Fink-users] Problem with xfree86

I also did a complete reinstall of fink and X stuff and it works fine. One thing that I think might be different is geight:/sw/etc] tkaiser% cat fink.conf Trees: local/main stable/main unstable/main stable/crypto local/bootstrap I think I had stable/main unstable/main reversed las

Re: [Fink-users] @LongLink ?

On Tue, Dec 10, 2002 at 09:51:21PM -1000, Brendan Lane Larson wrote: > Does anyone know what the heck @LongLink is? It's an artifact of using the bizarre 'tar' program instead of 'gnutar'. I have tar aliased to gnutar on OS X. -- =Nicholas Riley <[EMAIL PROTECTED]> |

Re: [Fink-users] updating fink to 0.11.1

Thanks, Martin. That fixed the problem! Artemio On Wednesday, December 11, 2002, at 06:10 PM, Martin Costabel wrote: On mercredi, déc 11, 2002, at 17:40 Europe/Paris, Artemio Gonzalez-Lopez wrote: [] File: fink-0.11.0-1.infoStatus: Up-to-date [] =

Re: [Fink-users] Jaguar and OpenLDAP-ssl

Thanks. With the additional export's you listed for fink-0.11.1, openldap-ssl has now compiled and is installed. I will test it tonight and make sure everything works. (FYI, I don't know if I copied something wrong when I originally created the patch file from this, but for some reason the

Re: [Fink-users] Jaguar and OpenLDAP-ssl

Ahah. It looks as though the libs in /usr/lib are the ones being brought in: ... cc -fno-common -I../../include -I../../include -I/sw/include/db3 -I/sw/include/cyrus-sasl -no-cpp-precomp -I/sw/include -L/sw/src/openldap-ssl-2.0.23-5/openldap-2.0.23/libraries -L/sw/lib -o apitest apitest.o -lldap

Re: [Fink-users] Jaguar and OpenLDAP-ssl

(Sorry -- forgot to include the mailing list in my response!) Actually the openldap-ssl package... sorry for being unclear. I can send or post the compilation output, but as it's quite long and others have already done so, I'm looking to see if anyone has a solution that hasn't made it to the m

Re: [Fink-users] updating fink to 0.11.1

On mercredi, déc 11, 2002, at 17:40 Europe/Paris, Artemio Gonzalez-Lopez wrote: [] File: fink-0.11.0-1.infoStatus: Up-to-date [] === File: fink-0.11.1-10.info Status: Up-to-date OK, so it wasn't what I suspected, bu

Re: [Fink-users] problems installing octave and gnuplot

On Wednesday, December 11, 2002, at 11:19 AM, Martin Costabel wrote: Artemio Gonzalez-Lopez wrote: [] dyld: /sw/bin/gnuplotx multiple definitions of symbol _PC /sw/lib/libreadline.4.dylib(terminal.so) definition of _PC /sw/lib/libncurses.5.dylib(lib_tputs.lo) definition of _PC Trace/BPT trap [1

Re: [Fink-users] Jaguar and OpenLDAP-ssl

I'm not 100% clear here: are you building the fink openldap package? On Wed, 2002-12-11 at 11:52, Aaron Magill wrote: > I am having problems compiling OpenLDAP under Jaguar -- it appears to > be pulling symbols from the system libraries instead of fink ones > (which I'm assuming are more up to

Re: [Fink-users] 0.5.0a installation issues

It appears, judging from the error message, that your syntax in the .cshrc is not correct but I cannot be sure because I haven't seen it. The lines from my .tcshrc are: if ( -f "/sw/bin/init.csh" ) then source /sw/bin/init.csh endif Perhaps those might work for you. -Daniel -- daniello

Re: [Fink-users] 0.5.0a installation issues

On mercredi, déc 11, 2002, at 17:19 Europe/Paris, Sascha Picchiantano wrote: hi there, I just installed fink 0.5.0a. I edited my .cshrc to source /sw/bin/init.csh. and right there is the problem: as soon as I open a new shell (so that init.csh get sourced) I get the following error: Bad :

[Fink-users] Jaguar and OpenLDAP-ssl

I am having problems compiling OpenLDAP under Jaguar -- it appears to be pulling symbols from the system libraries instead of fink ones (which I'm assuming are more up to date). Renaming /usr/local/lib and re-running the install doesn't seem to help. Any thoughts? Should I contact the maintai

Re: [Fink-users] 0.5.0a installation issues

What editor did you use to do the modifications? On Wed, 2002-12-11 at 11:19, Sascha Picchiantano wrote: > hi there, > > I just installed fink 0.5.0a. I edited my .cshrc to source /sw/bin/init.csh. > and right there is the problem: as soon as I open a new shell (so that > init.csh get sourced) I

Re: [Fink-users] updating fink to 0.11.1

On Wednesday, December 11, 2002, at 11:27 AM, Martin Costabel wrote: Artemio Gonzalez-Lopez wrote: It doesn't seem to work. Here's the output I get after executing "fink selfupdate-cvs": pkg fink version ### pkg fink version 0.11.0-1 This is completely impossible ;-) I wish it were! :-)

[Fink-users] 0.5.0a installation issues

hi there, I just installed fink 0.5.0a. I edited my .cshrc to source /sw/bin/init.csh. and right there is the problem: as soon as I open a new shell (so that init.csh get sourced) I get the following error: Bad : modifier in $ (/). and it appears that most of the init.csh is not being run. e

Re: [Fink-users] Problems with Apt

Did you install the July Tools before doing the August update? The August update is just a patch for the July tools. On Wed, 2002-12-11 at 03:27, R. L wrote: > Sorry, the August Jaguar update with the October patch. > > > > > > What version of the Developer Tools do you have? > > > > On Tue,

Re: [Fink-users] Which Darwin package kernel?

The information on the website looks wrong to me. The darwin virtual package version is based on that of the OS kernel, which _should_ be 6.2 for OSX 10.2.2. The versions for OSes 10.1 and 10.2 shouldn't both be at 6.3-1 in any case. On Wed, 2002-12-11 at 09:10, Brendan Lane Larson wrote: > Yest

Re: [Fink-users] Which Darwin package kernel?

At 4:10 Uhr -1000 11.12.2002, Brendan Lane Larson wrote: Yesterday I installed Fink 0.5.0a from the Source Release on OS X 10.2.2. My fink list on this machine states: i darwin 6.2-1 [virtual package representing the kernel] And then there's this Web page which states there's a diffe

Re: [Fink-users] DNA sequence viewer

I'm writing to ask if anyone knows of open source software available for MacOS/X11 that allows the user to view, manipulate and edit electropherograms from an ABI DNA sequencer. There is also the ClustalW package in Fink, as well as the NCBItools. I am not sure if they can replace the ABI soft

Re: [Fink-users] Which Darwin package kernel?

When Fink is installed, it creates a "darwin" package which corresponds to the version of the operating system which it is running under. darwin-6.3-1 would be found on a machine running OS X 10.2.3. Don't ask how that entry got into the package database: if I knew, I wouldn't be allowed to tel

Re: [Fink-users] @LongLink addenda

@LongLink is used by Mac OS X somehow, to warn about long pathnames. You can ignore it, I believe. -- Dave --- This sf.net email is sponsored by: With Great Power, Comes Great Responsibility Learn to use your power at OSDN's High Performanc

[Fink-users] Which Darwin package kernel?

Yesterday I installed Fink 0.5.0a from the Source Release on OS X 10.2.2. My fink list on this machine states: i darwin 6.2-1 [virtual package representing the kernel] And then there's this Web page which states there's a different version of the darwin kernel for release 0.5.0a-stab

Re: [Fink-users] dpkg path problems

On Wednesday, December 11, 2002, at 08:47 AM, David R. Morrison wrote: Certainly you need /sw/sbin in your path... Do you not "source /sw/bin/init.csh" somewhere in your .login or .cshrc? That should have added both /sw/bin and /sw/sbin to your path automatically, as well as setting environme

Re: [Fink-users] dpkg path problems

Certainly you need /sw/sbin in your path... Do you not "source /sw/bin/init.csh" somewhere in your .login or .cshrc? That should have added both /sw/bin and /sw/sbin to your path automatically, as well as setting environment variables that various Fink programs need... -- Dave ---

Re: [Fink-users] Hello? Kernel Panic Encountered During Update--More Details

Hi. It sounds like you have the unstable trees enabled... Now that 0.5.0a is out, many users will want to go back an re-edit their /sw/etc/fink.conf file to remove the "unstable" items from the "Trees" line. I put a new version of gmp, gmp-4.1.1, into the unstable tree yesterday. I didn't underst

[Fink-users] dpkg path problems

Used to use fink, held off after a clean-install of Jaguar, put 0.5.0a on last night, can't do anything because: The following NEW packages will be installed: system-xfree86 0 packages upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/2152B of archives. After unpacki

Re: [Fink-users] Problem with xfree86

I did a total reinstall of fink and all of xfree and it is working now. On Tuesday, December 10, 2002, at 09:17 PM, oplusplus wrote: I did do the shlib install when i installed base, and the lib IS in the directory the error complains about. On Tuesday, December 10, 2002, at 09:42 AM, Alexander

Re: [Fink-users] DNA sequence viewer - Veering OT

David Orlovich wrote: I'm writing to ask if anyone knows of open source software available for MacOS/X11 that allows the user to view, manipulate and edit electropherograms from an ABI DNA sequencer. I'm a bit out of the loop, having spent the last 4 years getting into web design instead of d

[Fink-users] Hello? Kernel Panic Encountered During Update--More Details

I am running 10.2.2 on my Mac PowerBook G4. This morning, I did a fink selfupdate-cvs, and it completed successfully. I then did a fink update-all, and it wanted to update gmp-4.1.1 and netpbm. Fine... Not so fine. First, something (dummy-6606) crashed, and then a bit later in the process, I ha

Re: [Fink-users] updating fink to 0.11.1

Artemio Gonzalez-Lopez wrote: It doesn't seem to work. Here's the output I get after executing "fink selfupdate-cvs": pkg fink version ### pkg fink version 0.11.0-1 This is completely impossible ;-) It would be interesting to see the output of cd /sw/fink/10.2/stable/main/finkinfo/base/ cvs

Re: [Fink-users] problems installing octave and gnuplot

Artemio Gonzalez-Lopez wrote: [] dyld: /sw/bin/gnuplotx multiple definitions of symbol _PC /sw/lib/libreadline.4.dylib(terminal.so) definition of _PC /sw/lib/libncurses.5.dylib(lib_tputs.lo) definition of _PC Trace/BPT trap [1]Exit 133 gnuplot [cubelet:~] artemio% octave d

[Fink-users] Hello? Kernel Panic Encountered During Update

I am running 10.2.2 on my Mac PowerBook G4. This morning, I did a fink selfupdate-cvs, and it completed successfully. I then did a fink update-all, and it wanted to update gmp-4.1.1 and netpbm. Fine... Not so fine. First, something (dummy-6606) crashed, and then a bit later in the process, I ha

Re: [Fink-users] selfupdate attempts to install 0.4.1a instead ofexpected 0.5.0a

Alexander Hansen wrote: [] The Fink Upgrade Matrix (http://fink.sourceforge.net/download/upgrade.php) tells me to: "Fink official binary distribution, version 0.3.x or later: Update using "fink selfupdate". If you have an install from 10.1, you may need to do so twice to be fully updated."

Re: [Fink-users] Problems with Apt

Sorry, the August Jaguar update with the October patch. > What version of the Developer Tools do you have? > > On Tue, 2002-12-10 at 04:26, R. L wrote: >> Hi everyone I checked the mailing list archives first and couldn't find >> anything about this so I hope it hasn't already been gone over,

[Fink-users] @LongLink addenda

I was mistaken that the @LongLink file is NULL. It is not NULL. I can only read it as in: sudo more @LongLink and then it show the following output from more: fink-0.5.0a-full/pkginfo/10.2/unstable/main/finkinfo/x11-system/ xfree86-base-threaded-4.2.1.1-2.patch What to do with @LongLink? T

[Fink-users] @LongLink ?

I want to do a clean install of the new Fink 0.5.0a release from the Source Release (http://fink.sourceforge.net/download/srcdist.php). Thus, I downloaded fink-0.5.0a-full.tar.gz from one of the Fink mirrors (Phoenix, AZ I believe). Following the Fink Installation document (http://fink.sourcef

Re: [Fink-users] updating fink to 0.11.1

It doesn't seem to work. Here's the output I get after executing "fink selfupdate-cvs": pkg fink version ### pkg fink version 0.11.0-1 pkg tar version ### pkg tar version 1.13.25-1 pkg gettext version ### pkg gettext version 0.10.40-3 pkg ncurses version ### pkg ncurses version 5.2-9 pkg