Hi Zeke,
Thank you so much !
It's working really well now. I have one more question- is there any way I
can display labels (name of the areas) as well on the maps I see (using
tksurfer command you suggested).
Thanks Zeke once again.
On Tue, Apr 26, 2016 at 4:44 PM, Z K wrote:
> The "freadFloat
The "freadFloat: fread failed" is a warning, not an error, and can be
ignored.
The ces.nii.gz, cesvar.nii.gz, sig.nii.gz files are surface overlays
stored in a "volume" format, so they have to be viewed on the surface.
You can do with this with something like:
$> tksurferfv fsaverage lh inf
thanks Dr. Fischl - it seems to match well so I will continue to use this
method. It would be great if Ruopeng could eventually edit Freesurfer to
allow for thresholding .labels too.
On another note, is there a way to edit labels in Freeview in a similar
manner to doing so in tksurfer?* From what
Martin,
You need to provide more details for us to help you. What version of
FreeSurfer? What exactly did you type in the command line as both your
analysis and your call to freeview?
If I were to take a wild guess, I would say you have the wrong surface
loaded. That tutorial does the analysis on
Hello again,
Somehow I figured out the error I had related to *.config. Now I am able to
run successfully all the 8 steps for 1 subject. I can see all the files
generated in a new folder i.e. ces.nii.gz, cesvar.nii.gz, sig.nii.gz etc.
But when I try to display any of these files using FreeView (af
Hi Hassan
we have answered you every time! Is is the total surface area of the white
matter surface. It is just a single number per hemisphere so there is
nothing to visualize
Bruce
On Tue, 26 Apr 2016, Hassan bakhshi wrote:
>
> Hello Bruce,
> Sorry I'm in a hurry and its 3rd time I emailed.
Hello Bruce,
Sorry I'm in a hurry and its 3rd time I emailed.
What is exactly the feature white surface area and how can I visualize it?
Kind regards,
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Hello everyone,
I am following this page to process fMRI data:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough
I am able to run until step-3 but at step 4, I am not sure what should be
directory to run this command. If I run the command in SUBJECTS_DIR
directory,
My apologies - there was a typo in my last message. The error reads that the
program could not find mri/001.mgz:
cibsr-i27-410:inProgress6.0b kel32$ pwd
/Volumes/Xspace/Freesurfer/inProgress6.0b
cibsr-i27-410:inProgress6.0b kel32$ ls
18512_T1_v5.3_hipp_v6.0 18512_hipp fsaverage
cibsr
Hi Lara,
mri/orig.mgz should be there also in the longitudinal directories. If it
is missing, more might be wrong. I would recommend rerunning those long
runs from scratch.
Best, Martin
On 04/25/2016 07:07 PM, Lara Foland-Ross wrote:
> Thank you Eugenio! This worked like a charm.
>
> Wondering
Hi Tilak
I think you need to improve your data if that is an option. I couldn't
see the gray/white boundary in either occipital or perirolandic cortex,
so no parameters are going to help there
cheers
Bruce
On Mon, 25 Apr 2016, Ramtilak Gattu
wrote:
Hey Bruce,
Following up with the questio
if you put them into a label file you can use mri_label_vals for this
cheers
Bruce
On
Mon, 25 Apr 2016, prasser wrote:
Hi,
Could you please let me know the command that takes say, ras coordinates (or
a list of them) and a .mgz as input, and outputs the corresponding voxel
values from the .m
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