ation in this e-mail is intended only for the person to whom it is
>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If
st
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr
etely yellow (5 on the colour bar).
> How do I interpret this?
>
> Any help would be much appreciated. Thanks,
> Elin
>
>
>
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> htt
. Would you please advise how to run the same analysis with
> DOSS from terminal and if it is possible to look at the results in
> QDEC Display again.
>
> --
> Best regards,
> Amirhossein Manzouri
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
P
;
> tksurfer fsaverage lh inflated -overlay /lh_groupdiff.dir/groupdiff/gamma.mgh
>
> Thanks
>
> Message: 8
> Date: Wed, 16 Oct 2013 11:47:59 -0400
> From: Douglas N Greve
> Subject: Re: [Freesurfer] gamma.mgh
> To: freesurfer@nmr.mgh.harvard.edu
> Message-ID: <525eb52f.5
w.partners.org/complianceline . If the e-mail was sent to you
> in error
> but does not contain patient information, please contact the sender
> and properly
> dispose of the e-mail.
>
>
>
> ___
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> Free
and my
> template seems to be very different (attached file), do you know why ?
>
> Sophie
>
>
>
> Le 18/10/13 16:19, « Douglas N Greve » a écrit
> :
>
>> Do you mean that the inflated surface has more curves in it than the
>> fsaverage one? What version are
t;
>>
>
>
>
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>
> The information in this e-mail is intended only for the person to whom it
; --
> Paul Beach
> DO/PhD candidate - Year VI
> Michigan State University
> - College of Osteopathic Medicine
> - Neuroscience Program
>- Bozoki Lab: Neurology/Radiology
>
>
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> Freesurfer
e \/
> /-i
> /extern/research/PI/training/beachpau/Beach_FreeSurfer_data/anterior_Salience/anterior_Salience.nii.gz
>
> *-flag?? */*/$FREESURFER_HOME//average/mni152.register.dat/*
> */
> /*
> */
> /*
> Thanks
>
>
> On Mon, Oct 21, 2013 at 11:19 AM, Douglas N G
the ages before running QDEC?
>
> Thanks,
> Crystal
>
>
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MGH-NMR Cen
0.000 -1.418 0.000 0.000 0.000 -0.336
> 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
> 0.000 0.000;
>
> ERROR: matrix is ill-conditioned or badly scaled, condno = 1e+08
>
>
> --
> --
> Laura M. Tully, PhD
>
---
> wen.zhang55
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number
On 10/22/2013 01:19 PM, Laura M. Tully wrote:
> Thanks for the suggestions Doug, I have a few clarifying questions
> below, to make sure I understand everything.
>
>
> On Tue, Oct 22, 2013 at 8:02 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
&
ogy/Radiology
>
>
> _______
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax:
g mri_glmfit-sim. BUT for both cases I use sign=pos for condition
> A vs. condition B.
>
> Thanks so much!
>
> Best,
> ~Sue
>
>
>
> On Tue, Oct 22, 2013 at 10:50 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> Hi Sue, I agree
ut an
> "example-brain" from freesurfer.
>
> Maybe it is possible to tell me where I can find this brain to use it
> for my analysis in combination with my qdec table which I can upload
> without problems.
>
>
> Carina
>
>
>
> - Ursprüngliche Nach
why is fast_selxavg3.m unhappy and XCond so large? Can it not handle 10
> separate blocks?
>
> The entire log file in the 2nd case is attached.
>
>
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&g
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.n
ing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileD
nformation, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in
>> error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>
>
>
>
egressor
doug
>
> Thank you.
> Dorian
> TJU
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone
surfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: http
ast_selxavg3.m unhappy and XCond so large? Can it not handle
>>> 10
>>> separate blocks?
>>>
>>> The entire log file in the 2nd case is attached.
>>>
>>>
>>> ___
>>> Freesurfer mailing l
s with the annot file.
>>>>> Thanks in advance for any help.
>>>>> Cheers,
>>>>> Marcos.
>>>>>
>>>>> ___
>>>>> Freesurfer mailing list
>>>>> Freesurfe
gt; ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs:
ion and lost my way in some point. I hope you can help me
> with the correct steps to be followed. I still dream of showing the
> hippocampus in a similar way we do with cortex when we load lh.pial
> and lh.aparc.annot.
> Thank you for your help and attention.
> Cheers,
> Marcos.
>
.edu.au*| W *www.rng.org.au
>
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.e
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-235
> F-values and T map , are they generated by q-dec?
> That would be great if I can get an answer in more detail since I have
> seen the post in FAQ, just need more information in detail regarding
> calculating the power !
> --
> Best regards,
> Amirhossein Manzouri
>
ction!
> BR
>
>
> On Tue, Oct 29, 2013 at 3:25 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> We don't have a way to do a power analysis directly from QDEC. I
> have some matlab code that does it for univariate analysis.
>
>
ity of Udine and University of Verona, Italy
> /
> ICBN Website: http://icbn.uniud.it/tiki-index.php
> /
>
> /
>
>
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> https://mail.nmr.mgh.harvard.edu/mailman/listi
e on the contents of this information is strictly
> prohibited and may be unlawful. If you have received this e-mail
> unintentionally, please immediately notify the sender via telephone at
> (773)
> 406-2464 or email.
>
>
> On Tue, Oct 29, 2013 at 10:25 AM, Douglas N Greve
>
to make sure that not getting the same results does not
> indicate a fundamental problem in my paradigm files.
>
> Thanks!
> Suzanne
>
>
> On Tue, Oct 29, 2013 at 3:31 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> Hi Suzanne, can you sen
sponse on the second question. I am not sure what
> you mean with demeaning, so I guess that I am not doing that :-) I
> just wanted to make sure that not getting the same results does not
> indicate a fundamental problem in my paradigm files.
>
> Thanks!
> Suzanne
>
>
> O
Dear Douglas, Please, find attached aseg.stats files for subj1 and
> subj2. Thanks Daniel
>
> Message: 4
> Date: Tue, 08 Oct 2013 11:39:11 -0400
> From: Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
> Subject: Re: [Freesurfer] missing eTIV in asegstats2tabl
his value would
> create very small values.
>
> Is there a standard TIV (i.e. from the talairach brain) to use as
> denominator for creating a ratio value? Or what is the best way to
> create a reasonable factor (i.e. 0.7-1.3) to correct/normalize roi
> volumes?
>
> Dorian
&
423 Moore Building
> nvg...@psu.edu <mailto:nvg...@psu.edu>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
.mat
>>> XCond = 4.33238e+08 (normalized)
>>> ERROR: design is ill-conditioned
>>>
>>> 1) why does nX increase by 10 in the 2nd case?
>>> 2) why is fast_selxavg3.m unhappy and XCond so large? Can it not handle
>>> 10
>>> separate blocks
al Researcher
>
> Department of Social Psychology
>
> University of Amsterdam
>
> s.oosterwijk@u <mailto:s.oosterw...@neu.edu>va.nl <http://va.nl>
>
> https://sites.google.com/site/suzanneoosterwijk/
>
>
>
> ___
no effect.
doug
>
>
> Thank you in advance for your help!
>
>
> Ashley
>
>
> --
> Ashley A. Shurick
> Ph.D. Candidate
> Department of Psychology
> Stanford University
>
>
> ___
> Freesurfer mailing list
determine if cortical thinning represents HC attaching a representative plot here.
>
> Thank you,
>
> Ashley
>
>
> On Tue, Oct 29, 2013 at 10:25 AM, Ashley Shurick
> mailto:ashley.shur...@gmail.com>> wrote:
>
> Thank you!
>
>
> On Tue, Oct 29, 201
n put are single values like age, group, cognitive testing etc,
> but maybe not an entire surface?
> Thanks a lot
>
>
> Best,
> Celine
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fs
eases does bot have that
> option. Is the version of mri_mcsim that understands --fwhm-max
> available?
Try ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_mcsim
doug
>
> Thanks again, Caspar
>
>
>
> 2013/10/24 Douglas N Greve <mailto:gr...@nmr.mgh.harva
sending the lh.pial screenshot due to list's 500 K
> restriction, but I can send you if you want to see.
> Cheers,
> Marcos
> Em Qui, 2013-10-24 às 19:39 -0400, Douglas N Greve escreveu:
>> areyou loading the label (output of mri_cor2label) or did you create an
>> annotation?
lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found
> /lib64/libc.so.6: version `GLIBC_2.7' not found
> Caspar
>
>
> 2013/10/30 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
>
>
>
>
>
> On 10/30/2013 08:51 AM, Caspar M. Schwiedrzik
OK, I put a centos4 build there, that should work
On 10/30/2013 11:05 AM, Caspar M. Schwiedrzik wrote:
> Hi Doug,
> that would be Red Hat Enterprise Linux Server release 5.9 (Tikanga)
> Caspar
>
>
>
>
> 2013/10/30 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>
csim: malloc(): smallbin double
> linked list corrupted: 0x281efc40 ***
> followed by a backtrace and a memory map.
> This did not happen when I ran it with --checkopts.
> Caspar
>
>
>
> 2013/10/30 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
&g
e use glmfit, the regressors
>>> that we can put are single values like age, group, cognitive testing
>>> etc,
>>> but maybe not an entire surface?
>>> Thanks a lot
>>>
>>>
>>> Best,
>>> Celine
>>>
>> --
>> Dougla
lh_7Networks_6_PFC_1vFix
> -c Cond1vFix
>
> Is it necessary to now generate the mean functional baseline offset value
> within the ROI in order to calculate percent signal change if our contrast
> is comparing condition-vs-fixation? Any clarification on when the offset
> value is neede
st/lh_7Networks_6_PFC_1vFix
>>> -c Cond1vFix
>>>
>>> Is it necessary to now generate the mean functional baseline offset
>>> value
>>> within the ROI in order to calculate percent signal change if our
>>> contrast
>>> is comparing condition-vs-fixation? A
pand a GM label into the white matter by n voxels?
>
> Corinna
>
>
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Douglas N.
;
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to
> whom it is
> addressed. If you believe this e-mail was sent to you in error and
> the e-mail
> contains patient
On 11/04/2013 12:25 PM, Corinna Bauer wrote:
> ok thanks, I'll give that a try. I would have to do that for each of
> the segmentations of interest and I get the number from the LUT?
>
>
> On Mon, Nov 4, 2013 at 11:47 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu&
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswi
se thickness files
> from both hemispheres?
>
> Thanks in advance
>
> Koushik
>
>
>
> ___
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--
Douglas N.
he functions, which I didn't how to either. If you can supervise me
> for how to write the functions correctly, that would be really
> appreciated.
>
> And after I generate nii file, how can I visualize it and see how it
> matches the ROI from the .label file? I tried tksurfer &quo
_
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr
09 AM, Caspar M. Schwiedrzik wrote:
>
> Hi Doug, Nick, and Zeke,
> just following up: Is there a version of mri_mcsim
> >1.17 that is
> compatible with centos5?
>
> Thanks!
> Ca
os.23.lh.sig.ocn.mgh --reg
> ff_01_030512/register.dat --fstarg --interp nearest --o
> ff_01_030512/label/lh.amygdala.imact.mgz --s ff_01_030512
>
>
> What am I missing? Is the translation off because I did something
> wrong, or does that point to a deeper issue?
>
>
> Any help i
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugRepo
isance factor: mean thickness). From this plot it
> appears that SAD > HC, but based on your answer to the previous
> question I would think this region should represent HC > SAD. Can you
> please explain this?
>
> Thank you!
>
>
> On Wed, Oct 30, 2013 at 7:33 AM, Doug
-out_type mgh --hemi lh --regheader suj1 --surf surfHippo*
> *mri_cor2label --i LeftHippoBody_surf.mgh --surf suj1 lh surfHippo
> --id 1 --l lh.HippoBody.label*
>
> Cheers,
> Marcos.
>
>
> Em Qua, 2013-10-30 às 10:47 -0400, Douglas N Greve escreveu:
>> I've lost tra
this issue?
>
> Thank in advance
>
>
> Best,
>
> Vivian
>
>
>
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>
>
--
Dougl
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listi
?
>
> Thanks,
>
> Emily
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
ng list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: htt
but is there a
> way to extract a time series for each voxel inside each label without
> averaging?
>
> Thanks,
>
> Martin
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e series for each voxel inside each label without
>>> averaging?
>>>
>>> Thanks,
>>>
>>> Martin
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://
;
> Here's my system info:
>
> FREESURFER_HOME: /usr/local/freesurfer/5.3.0
>
> Build stamp: freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0
>
> Kernel info: Darwin 10.8.0 i386
>
> Any thoughts?
>
> Michael
>
>
> __
nd not found.
> [Christophe-de-Bezenacs-MacBook-Pro:~/freesurferX/subjects] chdebezenac%
>
> Any help would be greatly appreciated,
>
> Christophe
>
>
>
>
>
>
>
>
>
> ___
> Freesurfer mailing list
>
urfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Monday, November 04, 2013 5:22 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] convert (resample) fsaverage/mri/aseg.mgz into
> $FSLDIR Nifti wi
ls_pet_ztest_pf05_fsaverage_std.mgh
> ${h}.patient01_vs_allcontrols_pet_ztest_pf05_fsaverage_zmap.mgh; done
>
>
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--
lmat0.trans.mat
> -schedule /usr/local/fsl/etc/flirtsch/xyztrans.sch -init
> /Users/chdebezenac/fmridata/FirstLevel/S1/scan1/scan1Cor.feat/reg/freesurfer/exf2anat.init.fsl.mat
> flirt.fsl: Command not found.
> ERROR: flirt
>
> Do you know why this might be?
>
> Thanks aga
oops, sorry I just noticed that you did respond to the list!
On 11/06/2013 10:16 AM, Douglas N Greve wrote:
> That should also be in $FREESURFER_HOME/bin. If not, just copy or
> symlink your flirt program to it.
> doug
>
> ps. Please remember to post to the FS list and not t
I hope you can help me in this final issue so we can finnish this
> thread. Thank you once more for your attention
> Cheers,
> Marcos.
> Em Seg, 2013-11-04 às 18:28 -0500, Douglas N Greve escreveu:
>> That vol2surf command might miss the values you want to sample. Try
>> add
briefly comment regarding segmentation method of
> above structures in FS?
> I'm just wondering whether segmentation of grey matter in FS is
> largely different from that of VBM?
> Sorry for bothering you again with my silly question.
>
> Thanks.
> Kim
&g
t; GroupDescriptorFile 1
> Class resp
> Class nonresp
> Input VP02pair resp
> Input VP03pair nonresp
> Input VP04pair resp
> Input VP05pair nonresp
> Input VP06pair resp
> Input VP07pair resp
> Input VP08pair resp
> Input VP09pair resp
> Input VP10pair nonresp
command?
>
> Thanks,
> Christophe
>
>
>
> On 6 Nov 2013, at 15:20, Douglas N Greve wrote:
>
>> oops, sorry I just noticed that you did respond to the list!
>>
>> On 11/06/2013 10:16 AM, Douglas N Greve wrote:
>>> That should also be in $FREESURF
orms/reg.mni152.1mm.dat --o
> aparc_aseg_mni152.nii.gz
>
> -roddy
> ____________
> From: Douglas N Greve [gr...@nmr.mgh.harvard.edu]
> Sent: Tuesday, November 05, 2013 5:21 PM
> To: Roderick McColl; Freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] conver
;
> 0.000 -0.369 -nan -nan;
> -0.000 -0.065 -nan -nan;
> 0.000 0.000 0.000 1.000;
>
> If there's any help, I'm glad to hear it. And if the answer is "no,
> the data is gone forever", this would be a helpful response, too.
>
> Philipp
>
;d effect size map?
> Thank you in advance for your helps!
> Ji Chen
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@
use.
> Thanks
> Celine
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Pho
know how I could put this into aparcstats2table?
>
> Thank you,
>
> Tara
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N.
use -m mean
doug
On 11/08/2013 02:26 PM, Tara Ann Miskovich wrote:
> I see thank you, and what would I use as the measure? Because for
> asegstats2table I chose between volume and mean correct? Sorry a bit new at
> this.
>
> Tara
>
> - Original Message -----
> From:
not sure if it is the one to use.
>>> Thanks
>>> Celine
>>> ___________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/fre
need?
>
> It would be very helpful, thanks in advance.
>
> Anita
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.har
urfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nm
ure
>> doug
>>>
>>> Thanks,
>>> Panos
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesu
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReport
;s definitely there in
> the directory containing fmcpr.nii
>
> can anyone help?
>
> many thanks
> Scott
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/lis
.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvar
ing colortable from annotation file...
> colortable with 4 entries read (originally ../label/Hippo.ctab)
> colortable with 4 entries read (originally ../label/Hippo.ctab)
> ippo.annot
> in_array_size=11627
>
> Thank you very much, Doug
> Cheers,
> Marcos
>
>
> Em Qua
> lgi measured in, and are values between 1-5 what is considered normal?
>
>
> Thank you very much
>
> Anna
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman
;
> On Wed, Nov 13, 2013 at 4:56 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
> that looks correct. It is the 2nd number you want. The first is
> for the
> medial wall (not interesting). You can have it report only for
> cortex
www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender
>> and properly
>> dispose of the e-mail.
>>
>>
>> ___ Freesurfer m
tablefile or should I use other command?
>
>
> On Wed, Nov 13, 2013 at 6:59 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> yes and yes
>
>
> On 11/13/2013 12:04 PM, Anna Jonsson wrote:
>
> Thank you very much. By second I a
glrun (as indicated
> on the wiki). Is there something I need to do to fix the installation, or do
> I need vglrun?
>
> Thank You,
> Dan Wakeman
>
> ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mai
mgz
> mri_glmfit-sim --glmdir glm.${label} --sim mc-z 1 2.3
> mc-z.pos.23.lh --sim-sign pos
> end
>
> But I get an error saying:
>
> FWHM = -nan
> ERROR: input FWHM is NaN (not a number).
> Check the mask in the glm directory.
>
> Any ideas what I am doin
> Chris
>
>
>
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.m
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