[Freesurfer] Troubles to determine the type of recon editing needed

2018-09-14 Thread Diamond, Bram Ryder
Hi Matthieu, I've taken a look through the files you shared with us and I see the poor surfaces in the posterior right hemisphere you were referring to in your message. It looks like your subject has a combination of abnormally large ventricles and significant wm abnormalities, so I'm surprise

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-14 Thread Diamond, Bram Ryder
gh.harvard.edu; astev...@nmr.mgh.harvard.edu Subject: [Freesurfer] Troubles to determine the type of recon editing needed Hi Matthieu, I've taken a look through the files you shared with us and I see the poor surfaces in the posterior right hemisphere you were referring to in your message. It loo

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-14 Thread Matthieu Vanhoutte
:* matthieuvanhou...@gmail.com > *Cc:* freesurfer@nmr.mgh.harvard.edu; astev...@nmr.mgh.harvard.edu > *Subject:* [Freesurfer] Troubles to determine the type of recon editing > needed > > > Hi Matthieu, > > > I've taken a look through the files you shared with us and I s

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-14 Thread Diamond, Bram Ryder
du>> Sent: Friday, September 14, 2018 11:07:42 AM To: matthieuvanhou...@gmail.com<mailto:matthieuvanhou...@gmail.com> Cc: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>; astev...@nmr.mgh.harvard.edu<mailto:astev...@nmr.mgh.harvard.edu> Subject: [Freesur

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-14 Thread Bruce Fischl
s email. Best, Bram From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Diamond, Bram Ryder Sent: Friday, September 14, 2018 11:07:42 AM To: matthieuvanhou...@gmail.com Cc: freesurfer@nmr.mgh.harvard.edu; astev...@nmr.mgh.harvard.edu Subject: [Freesurfer] Troub

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-18 Thread Matthieu Vanhoutte
freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Diamond, Bram Ryder < > brdiam...@mgh.harvard.edu> > *Sent:* Friday, September 14, 2018 11:07:42 AM > *To:* matthieuvanhou...@gmail.com > *Cc:* freesurfer@nmr.mgh.harvard.edu;

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-18 Thread Bruce Fischl
evious email. Best, Bram From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Diamond, Bram Ryder Sent: Friday, September 14, 2018 11:07:42 AM To: matthieuvanhou...@gmail.com Cc: freesurfer@nmr.mgh.harvard.edu; astev...@nmr.mgh.harvard.edu Subject: [Freesurfer] Troubles to de

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-18 Thread Matthieu Vanhoutte
__ >> ________ >> >> From: freesurfer-boun...@nmr.mgh.harvard.edu < >> freesurfer-boun...@nmr.mgh.harvard.edu> on >> behalf of Diamond, Bram Ryder >> Sent: Friday, September 14, 2018

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-18 Thread Bruce Fischl
Subject: [Freesurfer] Troubles to determine the type of recon editing needed   Hi Matthieu, I've taken a look through the files you shared with us and I see the poor surfaces in the posterior right hemisphere you were

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-18 Thread Matthieu Vanhoutte
> Bram > > > > > _______________________ > > _ > > From: freesurfer-boun...@nmr.mgh.harvard.edu > > on > > behalf of Diamond, Bram

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-19 Thread Diamond, Bram Ryder
pport list Subject: Re: [Freesurfer] Troubles to determine the type of recon editing needed External Email - Use Caution Ok I will test it on normal subjects. Do I have to put this -bigventricles flag on all recon-all commands following manual editing of brainmask, white matter,...etc or

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-19 Thread Matthieu Vanhoutte
on behalf of Matthieu Vanhoutte < > matthieuvanhou...@gmail.com> > *Sent:* Tuesday, September 18, 2018 12:45:23 PM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] Troubles to determine the type of recon > editing needed > > > External Email - Use Caution &

Re: [Freesurfer] Troubles to determine the type of recon editing needed

2018-09-20 Thread Bruce Fischl
d. Bram  From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Matthieu Vanhoutte Sent: Tuesday, September 18, 2018 12:45:23 PM To: Freesurfer support list Subject: Re: [Freesurfer] Troubles to determine the type of recon editing needed