Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Katsumi, Yuta
ge- From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Katsumi, Yuta Sent: Friday, June 19, 2020 9:42 AM To: Freesurfer support list Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format Thanks, Tim and Matt. I made a ty

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Glasser, Matthew
ubject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format Thanks, Tim and Matt. I made a typo earlier - I meant to say that my overlay files are already in full fsaverage space with ~164k vertices. I also thought that mri_convert doesn’t take .gii as output, but the comman

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Fischl, Bruce
AM To: Freesurfer support list Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format Thanks, Tim and Matt. I made a typo earlier - I meant to say that my overlay files are already in full fsaverage space with ~164k vertices. I also thought that mri_convert doesn’t take

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Fischl, Bruce
support list Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format External Email - Use Caution I can't telt you how to get your data from 16k fsaverage to the full 162k fsaverage mesh, but once you have the full fsaverage version, to convert to gifti, just

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Katsumi, Yuta
> > Matt. > > From: on behalf of "Katsumi, Yuta" > Reply-To: Freesurfer support list > Date: Thursday, June 18, 2020 at 10:43 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Visualizati

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Glasser, Matthew
rsday, June 18, 2020 at 10:43 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format > > > Hi Matt, > > For instance, I have a statistical map (e.g., showing magnitude of functional connectivit

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Tim Schäfer
esolution fsaverage space and from there we can help you get it to > CIFTI in fs_LR. > > Matt. > > From: on behalf of "Katsumi, Yuta" > > Reply-To: Freesurfer support list > Date: Thursday, June 18, 2020 at 10:43 PM > To: Freesurfer support list > Subject:

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-19 Thread Glasser, Matthew
. Matt. From: on behalf of "Katsumi, Yuta" Reply-To: Freesurfer support list Date: Thursday, June 18, 2020 at 10:43 PM To: Freesurfer support list Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format Hi Matt, For instance, I have a statistical map (e.g

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-18 Thread Katsumi, Yuta
) to .dscalar so it’d be CIFTI/wb compatible. Thanks, Yuta From: on behalf of "Glasser, Matthew" Reply-To: Freesurfer support list Date: Thursday, June 18, 2020 at 10:37 PM To: Freesurfer support list Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the

Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-18 Thread Glasser, Matthew
ualization of FreeSurfer overlays in the HCP format Dear FreeSurfer community, I would like to be able to display OVERLAY files generated in FreeSurfer on a surface in the HCP’s Workbench (e.g., on fs_LR surf.gii). The HCP team states in their documentation (https://wiki.humanconnectome.org/display/

[Freesurfer] Visualization of FreeSurfer overlays in the HCP format

2020-06-18 Thread Katsumi, Yuta
Dear FreeSurfer community, I would like to be able to display OVERLAY files generated in FreeSurfer on a surface in the HCP’s Workbench (e.g., on fs_LR surf.gii). The HCP team states in their documentation