External Email - Use Caution I can't telt you how to get your data from 16k fsaverage to the full 162k fsaverage mesh, but once you have the full fsaverage version, to convert to gifti, just do:
mri_convert yourfile.mgh yourfile.func.gii Best, Tim > On June 19, 2020 at 1:10 PM "Glasser, Matthew" <glass...@wustl.edu> wrote: > > > External Email - Use Caution > > The appropriate GIFTI extension for that would be .func.gii. What fsaverage# > space is that? Hopefully FreeSurfer provides a tool to convert that to GIFTI > in full resolution fsaverage space and from there we can help you get it to > CIFTI in fs_LR. > > Matt. > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Katsumi, Yuta" > <ykats...@mgh.harvard.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Thursday, June 18, 2020 at 10:43 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP > format > > > Hi Matt, > > For instance, I have a statistical map (e.g., showing magnitude of functional > connectivity at each vertex) that has been computed in 16k fsaverage space > that I want to display on a fs_LR surface. I was wondering if there’s a way > to convert this file (which is in .mgh extension now) to .dscalar so it’d be > CIFTI/wb compatible. > > Thanks, > Yuta > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Glasser, > Matthew" <glass...@wustl.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Thursday, June 18, 2020 at 10:37 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: Re: [Freesurfer] Visualization of FreeSurfer overlays in the HCP > format > > > External Email - Use Caution > What kind of data does one display in an “OVERLAY” file? > > Matt. > > From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Katsumi, Yuta" > <ykats...@mgh.harvard.edu> > Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Date: Thursday, June 18, 2020 at 5:43 PM > To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] Visualization of FreeSurfer overlays in the HCP format > > > Dear FreeSurfer community, > > I would like to be able to display OVERLAY files generated in FreeSurfer on a > surface in the HCP’s Workbench (e.g., on fs_LR surf.gii). The HCP team states > in their documentation > (https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-9.HowdoImapdatabetweenFreeSurferandHCP?) > that any surfaces to be converted to fs_LR need to be in .gii first, but I > know mris_convert doesn’t take overlay files as input. It would be great if > you could please let me know how I might be able to achieve this task. > > Thanks, > Yuta > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer