/gpc-
dev/2020q3/011077.html Stoddard's CDM 6 review].
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discussion?
Also, is the [https://dbmi-pitt.github.io/ACT-
Network/data_harmonization.html Data Harmonization Workgroup] the relevant
group?
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it.
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the updated ontology (RxNorm, SNOMED-CT, LOINC, ICD-10CM) to
MCW, and Intermountain
(from Sep 15 gpc-dev meeting)
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YNTHEA, also in a DOCKER
image
-- https://transmartfoundation.org/agenda-modified/
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) are in receipt of medication_metadata.zip (53804323 bytes).
Thanks, Jim and co.
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will investigate comment:38 and report back. (from 31 Mar call)
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ata in there.
The cover page says that zip file includes release notes, but I don't see
them in there. So I downloaded
`Nebraska_Lexicon_Release_Notes_20190817.pdf`; neither "i2b2" nor "SHRINE"
occurs in there.
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" adaptable
enrollment counts; that means this is done, if I'm not mistaken.
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Batch modification to #120, #23, #229 by dconnolly:
milestone to snow-shrine-3
Comment:
consolidating SHRINE milestones
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ing our drug orders to that set of codes. I notic in our
metadata build that Jay has not used the brand names on the metadata but
the brandname RXCUIs are included. We will fix that.
Jim
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gpc-informat
Dose Inhaler, 200 A||
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tology
around July 2017.
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/data-generator Latest commit 24568e0 on Apr
13
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adata, version 1.2 (20190430)"
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due to retire as Harvard joins ACT.
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Comment (by campbell):
Apologies to GPC colleagues. SNOW SHRINE publications have been moved to:
https://www.unmc.edu/pathology-research/bioinformatics/campbell/tdc.html
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: | Blocked By:
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---+-
Changes (by dconnolly):
* status: new => closed
* resolution: => worksforme
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:
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* milestone: snow-shrine-2 => snow-shrine-3
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gpc-in
e work, everybody.
Kristen, if I missed something and there's more to do, feel free to reopen
this.
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ved an
acknowledgement that Yesh downloaded it on 02/21.
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Recall the Jan 15 plan was to deliver by end of Jan.
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| Resolution:
Keywords: BC breast-cancer | Blocked By:
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Comment (by schandaka):
KUMC submitted their results today.
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raction and quality check
[https://github.com/sxinger/AKI_CDM#background Task 1.1 and Task 2.1]
For more details, please visit: https://github.com/kumc-bmi/AKI_CDM or
xsong's branch: https://github.com/sxinger/AKI_CDM
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. We'll
have no trouble getting this set up by the April refresh.
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phase2-h5 => pcornet-cdm-6
Comment:
Jan 15 status:
- **UNMC, UTSW** to deliver by end of the month
- **UIOWA** - end of Jan OK
- **KUMC** - Maren OK end of Jan
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:
Keywords:| Blocked By:
Blocking: 713 |
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Is this done? If not, who has the ball? What's the next step?
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call)
1. MU - has unshift-capability (Jan 15 call, comment:3)
1. IU - April, pending IRB mod (comment:5)
1. **Utah** - ???
1. **Allina** - ???
1. **Intermountain** - ???
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gp
release.
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for this by
the April refresh cycle.
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on 20180115
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nt the 'no date shift' logic this month though in
preparation for the C6R2 in April.
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rdware shuffling, we first built our datamart with date shifting and we
are now ready to run it without date shifting.
Laurel, how about Marshfield?
After you give your answer, please re-assign to another site.
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for
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ver this while Hillary is out?
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an email on 12/20 to those on the IRB who should be working on this
submission:
• UIOWA - Nick Smith
• KUMC – Maren and Sravani
• UNMC - Yesh
• UTSW – Phillip, Shiby
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-sharing | Resolution:
Keywords: aki cdm | Blocked By:
Blocking:|
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* cc: jtvansch@… (added)
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/PCORnet_CDM_ValueSet_ReferenceFile_v1.4.xlsx).
Let NU know if assistance in mapping from raw payer categories into PCORI
categories is needed.
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Gr
in ENROLLMENT. Northwestern to please respond and agree on data
formatting for ENROLLMENT.ENR_BASIS attribute
Jim Campbell
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Greater Plains Network -
continue to promote convergence of
metadata maintenance with ACT network given the number of GPC sites which
will be participating in that SHRINE network.
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By:
---+---
Changes (by dconnolly):
* status: assigned => closed
* resolution: => fixed
Comment:
This has shipped twice: March and now Dec.
https://www.unmc.edu/pathology/informatics/tdc
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#slide=id.p
DevTeams Tools and Techniques]
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01-01")
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sforme
Comment:
It's not clear to me what was supposed to happen with this. I suppose it
happened.
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By:
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* cc: gpc-dev@… (added)
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er the JVM reaches the heap size limit. If that occurs, site
can decide to restrict collection window by resetting `start_date` and
`end_date` (e.g. start_date = "2014-01-01")
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/2012 0:00 3/31/2014
0:00
NN BCBS NETWORK BLUE BCBS6 4/1/2014 0:00 (null)
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are ready to be tested.
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>
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http://l
s'.)
>
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een
dateadd(day,-30,pat.ADMIT_DATE) and
pat.DISCHARGE_DATE order by PATID, ENCOUNTERID, RXNORM_CUI, RX_START_DATE
(Invalid object name '#AKI_onsets'.)
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| Blocked By:
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---+---
Comment (by lv):
Account needed for Steffani Roush - roush.steff...@marshfieldresearch.org
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in mutate_impl(.data, dots) :
> Column `expos_daily` must be length 0 (the number of rows) or one, not
2
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Greate
) :
Column `expos_daily` must be length 0 (the number of rows) or one, not 2
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s 479-551 (AKI_CDM_EXT_VALID_p1_QA.Rmd)
> Error in mutate_impl(.data, dots) :
> Evaluation error: object '2' not found.
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(AKI_CDM_EXT_VALID_p1_QA.Rmd)
Error in mutate_impl(.data, dots) :
Evaluation error: object '2' not found.
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ttp://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:25>
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Greater Plains Network - Informatics
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t; 0.1%||661 ||
86.9% ||
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:24>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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L server. It
seems like the tSQL on Github was not updated fully (certain functions
native to oracle still exist in the updated files).
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:19>
gpc-informatics <http://informatics.gpcnetwork.org/>
Great
URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/714#comment:7>
gpc-informatics <http://informatics.gpcnetwork.org/>
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on Github was not updated fully (certain functions native to
oracle still exist in the updated files).
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:18>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network -
YPE_PRIMARY is not null`... that succeed for
`NI` and `OT`. Is that on purpose? That is: do you want to count "no
information" and "other" as successfully mapped payer types?
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:23>
gpc-i
ment:21 dconnolly]:
> Song, I see `when PAYER_TYPE_PRIMARY is not null`... that succeed for
`NI` and `OT`. Is that on purpose? That is: do you want to count "no
information" and "other" as successfully mapped payer types?
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Ticket URL:
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you want to count "no
information" and "other" as successfully mapped payer types?
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:21>
gpc-informatics <http://informatics.gpcnetwork.org/>
G
:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:20>
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ttp://informatics.gpcnetwork.org/trac/Project/ticket/718#comment:1>
gpc-informatics <http://informatics.gpcnetwork.org/>
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should also be posted to box.
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Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/718>
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ter-based
financial class. We will follow up on the KUMC code and this ask during
Oct. 9th GPC-dev call.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/715#comment:19>
gpc-informatics <http://informatics.gpcnetwork.org/>
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rk.org/trac/Project/ticket/715#comment:18>
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ttp://informatics.gpcnetwork.org/trac/Project/ticket/711#comment:17>
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