afternoon, and will update this ticket with the results.
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omment:
Of our 12 sites, the 9 using a common approach (comment:24) form a
critical mass.
We'll track the remaining issues separately: UMNC #455, UMN #503, IOWA
#504.
[[TicketQuery(id=455|503|504)]]
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know what should happen next? Are we
done?
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regrading the Data Quality SAS report.
This issue was corrected. All 3 files were sent, I believe this occurred
on 4/13/2016, but certainly by 4/15/2016 when we received the Data
Characterization query from Popmednet.
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AME
where lab.c_fullname like '\PCORI\LAB_RESULT_CM\%';
}}}
My current goal is to find a meaningful way to hang our local LOINC lab
leaves under the SCHILS "parent" nodes.
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:| Blocked By: 209
Blocking:|
--+---
Changes (by lv):
* status: assigned => closed
* resolution: => fixed
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issues in coding. It's not clear if they want us to fix those or not.
Keith believes that we will resolve the date issues by the end of the day
today. No comment on the Data Dictionary yet.
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Keywords:| Blocked By:
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* status: new => closed
* resolution: => fixed
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the large SAS temp files and that made all the difference.
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to the cohort query ticket (#263) so I made
a note there.
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responses to DRNOC (comment:76) from all sites but
UTSW; maybe I missed something... please confirm that you sent something.
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Steve on reusability and build on Dan and
Steve's latest work.
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-3207 Call-in toll number (US/Canada)
Access code: 732 916 579
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wever, a draft needs to
be sent to KUMC (Russ Waitman, Michael Prittie, Nathan Graham, and Dan
Connolly) by end of day Friday, May 13.
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Grea
ify
that post-transform table contents look reasonable.
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-transform].
Assigning to Dan to close or reassign if there is other work to be done on
this at the GPC level.
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error messages you're receiving?
'''UNMC''' - ETA early this week, per Jay Pedersen by mail on 4/30.
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PROC_SORT as Keith reported. 300GB wasn't enough so we tried saving to
network storage, but that ended up being painfully slow. In the end we
added a 1 TB disk to the VM and all was right with the world.
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ciated with that encounter;
else they are associated with that patient-day.
I'm not sure where to go from here; I hop to collect info from other
sites.
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Grea
<200G."
I suspect we're doing something wrong. But we can't figure out what, so we
just keep throwing hardware at the problem.
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the
5 criteria that Russ forwarded last week but would welcome any feedback
from GPC/PCORI. Thus far, we believe that any data issues that were
flagged are explainable for our environment.
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PHONE: 1-855-244-8681 / Access code: 739 095 937
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if there were issues with out initial submission. I've
contacted Michael Park for further details.
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, VPN, or
VM
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;
We're still on track to have the query finished by 4/26. KUMC, please be
aware of the issues I post about on GitHub for CDM v3 code.
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Gr
:
Blocked By: | Blocking:
+---
James Topping sent a request on 4/8/16 asking if MCRF would participate in
beta testing Menu-Driven Queries from PCORnet.
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250.x diagnosis,
Ethnicity, and Race.
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/docker_i2b2_wcapp/branch/layerj 782c8ff
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e to 16M war file for scala
- 60d1631 complete JobDetail form parameter parsing
- 0b93391 check for empty concept list; factor JobDetail out of
groovlet
- c8c0e35 fix typo in all copyright messages
- d8bf6a5 testZeroConcepts etc. with JUnit
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jdbc driver.
Put back in the default seine-data-builder-ds.xml database connection
file. Updated the add_qt_job_columns.sql with the insert needed and have a
run_mcw.sh script to run the two steps.
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`seine-minibuilder-0.5-8b1d288b0707.zip` to DataBuilder. I
have to take the other one down; we don't have license to republish the
oracle jdbc driver.
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/ -Dtimeline-xml=input.xml
-Ddataset=mcwstudy
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George's progress above; I'll have to take a look.
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t:25; I don't think that was on purpose.
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| Resolution:
Keywords:| Blocked By:
Blocking:|
--+
Changes (by dconnolly):
* milestone: gpc-phase2-h2 => gpc2sites
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omment:14; he has done that bit. Nathan is
working on #496.
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506%2C503%2C491%2C504%2C359%2C282%2C326>
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TSW
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Note also https://github.com/MCW-BMI/i2b2Exporter
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:
Keywords: | Blocked By: 381, 486
Blocking: 510 |
-+
Changes (by dconnolly):
* owner: campbell => mish
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:
Keywords: | Blocked By: 511, 513
Blocking: 295 |
-+---
Comment (by jdale):
UMN submitted via REDCap on 7/5/16
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procedure data
- #517 MU CDM: No Access to DRN OC Resources
- #518 UNMC CDM: No Access to DRN OC Resources
ref
- [https://pcornet.imeetcentral.com/drnoc-workgroups/file/46229509/ DM
Status by both Data Characterization and DSA] Updated 7.8.16
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Ticket URL:
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lter table blueherondata.qt_query_result_instance
add (
path varchar2(4000)
);
}}}
I also have not committed the SQL code in the middle tier that inserts
this way.
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://informatics.gpcnetwork.org/trac/Project/attachment/wiki/DataBuilder
/seine-minibuilder-0.5-68fd27b6b771.zip seine-
minibuilder-0.5-68fd27b6b771.zip]
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Gr
driver
org.hsqldb.jdbc.JDBCDriver could not be loaded
Total time: 3 seconds
Hmm .. no hsqldb-2.3.2.jar
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at is the XML in question where
does this XML Code go ?
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the debug window and grab the XML of the request and put it in, say,
timeline.xml; then
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get a
`dataset-0.zip`.
All that DBA stuff is obsolete. The README is more up-to-date now.
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.
(Changes to the data_builder username are not (yet?)
supported.)
We use the JDBC drivers from i2b2:
jdbc.lib: ${jdbc.lib}
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}/.ivy2/cache/`.
` seine-minibuilder-0.5-f08eb078cb97.zip​` is attached to DataBuilder
- f08eb078cb97 download HSQLDB driver automatically on first run of
integration-test
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-0.5-f08eb078cb97 gkowalsk$
}}}
I'm getting the shotgun on this blueherondata thats popping up in the sql
:-)
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these 4 scripts .
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306_01/em.102/b40103/app_oracle_reserved_words.htm
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7 gkowalsk$
}}}
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T_SQ_QI_QIID.nextval,
}}}
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:
insert into qt_query_instance (query_instance_id, user_id, group_id,
patient_set, start_date, status_type_id, message) values (
QT_SQ_QI_QIID.NEXTVAL , etc )
We're not in Mysql land toto ...
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query . I'll re-upload this tomorrow to
the redcap project.
G
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l trying to identify the problem on this one. There's nothing telling
in the log.
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y's gpc-dev call #12)
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y's message of
November 07, 2016 1:22 PM.
Brad, let me know if the counts are a critical issue for MCW or any other
sites.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/297#comment:58>
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i2b2| Blocked By:
Blocking: |
-+---
Changes (by jmcclay):
* status: assigned => closed
* resolution: => fixed
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/528#comment:5>
gpc-infor
://informatics.gpcnetwork.org/trac/Project/ticket/574#comment:4
#574] to track the phenotype development, chart review and the total
eligibility counts for the second computable phenotype.
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:55>
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<http://informatics.gpcnetwork.org/trac/Project/ticket/263#comment:54>
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ery?id=280%2C532%2C567%2C519%2C525%2C575%2C461>
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2/6/17
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Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/580>
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Comment (by dconnolly):
George was in touch with Brad M. on Friday with a revised ETA: Jan 30.
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<http://informatics.gpcnetwork.org/trac/Project/ticket/297#comment:57>
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0#comment:9>
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335#comment:49>
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(by dconnolly):
* keywords: LOINC Lab_PRO_CM SCILHS => LOINC Lab_PRO_CM SCILHS all-sites
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/583#comment:3>
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ote the use of SFTP site provided by Northwestern rather than GPC REDCap
(#542).
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/545#comment:9>
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n GPC REDCap
(#542).
--
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/545#comment:10>
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