Re: [HCP-Users] -cifti-separate converts from dscalar to nifti: is it possible to generate one nifti from each dscalar map?

2017-12-12 Thread Xavier Guell Paradis
: Tuesday, December 12, 2017 7:37 PM To: Xavier Guell Paradis; hcp-users@humanconnectome.org Subject: Re: [HCP-Users] -cifti-separate converts from dscalar to nifti: is it possible to generate one nifti from each dscalar map? wb_command -volume-merge allows you to select specific maps despite its

Re: [HCP-Users] -cifti-separate converts from dscalar to nifti: is it possible to generate one nifti from each dscalar map?

2017-12-12 Thread Glasser, Matthew
radis <xavie...@mit.edu<mailto:xavie...@mit.edu>> Date: Tuesday, December 12, 2017 at 6:35 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-U

[HCP-Users] -cifti-separate converts from dscalar to nifti: is it possible to generate one nifti from each dscalar map?

2017-12-12 Thread Xavier Guell Paradis
Dear HCP experts, I have a dscalar file with 4 maps and would like to convert each map into one separate nifti file. I am not worried about the problem of surface information in a nifti file, because I am interested in subcortical data only. I have been able to transform the dscalar into a nifti

Re: [HCP-Users] -cifti-separate

2015-01-12 Thread Glasser, Matthew
@humanconnectome.org hcp-users@humanconnectome.org Subject: Re: [HCP-Users] -cifti-separate Is data created by the HCP pipeline. I made a t-map and saved it as a cifti file with 91K brain ordinates and I would like to cluster extent thresholding using the -cifti-fiind-clusters command but I am not sure what

Re: [HCP-Users] -cifti-separate

2015-01-12 Thread Marta Moreno
@humanconnectome.org Subject: [HCP-Users] -cifti-separate Hi users, I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command. The output from cifti-separate is not recognized. How do I convert

Re: [HCP-Users] -cifti-separate

2015-01-12 Thread Glasser, Matthew
Is this HCP data or your own data? Matt. From: Marta Moreno mmorenoort...@icloud.com Date: Monday, January 12, 2015 at 10:06 PM To: Matt Glasser glass...@wusm.wustl.edu Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org Subject: Re: [HCP-Users] -cifti-separate What

Re: [HCP-Users] -cifti-separate

2015-01-12 Thread Glasser, Matthew
Please post your wb_command -cifti-separate command line. Peace, Matt. From: Marta Moreno mmorenoort...@icloud.com Date: Monday, January 12, 2015 at 9:52 PM To: hcp-users@humanconnectome.org hcp-users@humanconnectome.org Subject: [HCP-Users] -cifti-separate Hi users, I am using

[HCP-Users] -cifti-separate

2015-01-12 Thread Marta Moreno
Hi users, I am using the -cifti-separate command to generate a surface (i.e. CORTEX RIGHT) to use as right surface input to the -cifti-find-clusters command. The output from cifti-separate is not recognized. How do I convert it to a format that will work with cifti-find-clusters? I tried

Re: [HCP-Users] -cifti-separate

2015-01-12 Thread Marta Moreno
Glasser glass...@wusm.wustl.edu Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org Subject: Re: [HCP-Users] -cifti-separate Is data created by the HCP pipeline. I made a t-map and saved it as a cifti file with 91K brain ordinates and I would like to cluster extent thresholding