Re: [Histonet] tissue fixation-formaldehyde concentrations which is best.

2015-06-12 Thread Smith, Allen A
There are many books on histological technique. Most of them are expensive. The 5th edition of John Kiernan's excellent HISTOLOGICAL AND HISTOCHEMICAL METHODS will sell for $100 when it comes out in July. If that is too much for your budget, there are older books that cover 95% of what you ne

[Histonet] RE:Blade Rationing

2013-06-18 Thread Smith, Allen
I run an academic lab on a very tight budget. A paper towel used to dry washed hands is used again. Outdated dye solutions are adsorbed onto a small pile of old paper towels to save on waste disposal costs. (A quarter-pound of solid waste costs less to dispose of than 2 liters of aqueous liqu

RE: [Histonet] picric acid paranoia

2013-06-04 Thread Smith, Allen
Picric acid bound to collagen is not an explosion hazard. Even if it were, the surrounding paraffin wax would cushion the picric acid to the point of making it shockproof. Most of the picric acid in a fixative ends up in the hazmat bottle rather than in the tissue. Thus even putting 50 or s

RE: [Histonet] Formalin

2013-06-03 Thread Smith, Allen
Formalin does burn. If you soak a piece of paper in formalin, you can set it on fire with a match. Formalin is also slightly carcinogenic. The biggest problem with formalin is that a few people are severely allergic to it. -Allen A. Smith, Ph.D. Barry University School of Podiatric Medicine -

RE: [Histonet] Working in a Lab alone

2013-05-24 Thread Smith, Allen
Normally, I work alone. Sometimes a graduate student works with me. In a few cases, where special hazards are involved (e.g. lithium aluminum hydride, diazomethane), I will work only if I am alone in my lab so that I will be the only one injured AND someone who could help is present in an adjac

RE: [Histonet] Best Carmine stain

2013-03-17 Thread Smith, Allen
Best's carmine and mucicarmine are very different stains. Mucicarmine is carminic acid mordanted with aluminum in acid solution. It stains mucus but not glycogen. Best's carmine is an ammoniated carminic acid, probably an amine at one end and an amide at the other. It is very basic. It is a se

RE: [Histonet] Alcian Blue

2013-02-27 Thread Smith, Allen
Alcian blue lasts until loss of dye onto the sections weakens staining. If one runs many slides through it, it may not last 6 weeks. With light use, it may last 6 years. Allen A. Smith Professor of Anatomy Barry University School of Podiatric Medicine -Original Message- From: histonet-

RE: [Histonet] Osmium tetroxide staining for lipids

2012-08-24 Thread Smith, Allen
Osmium tetroxide solutions will fix your skin on contact, but skin grows back. Osmium tetroxide fumes will fix your corneas which are irreplaceable. Osmium tetroxide is dangerous, but it is manageable. First, make sure your fume hood draws really, really well. Put 100 ml of pH 7.2 phosphate-

[Histonet] RE: disposal of formalin

2012-08-17 Thread Smith, Allen
We hire a licensed waste disposal company. Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, Florida -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Lake

[Histonet] RE: counterstain for Alcian Blue (ph2.5)

2012-08-01 Thread Smith, Allen
The time and trouble of making up a solution of aluminum mordanted nuclear fast red repays you well. The staining solution contains to work well for an entire year. If you must have something else, brazalum, made by substituting brazilin for hematoxylin in Mayer's hemalum, works very well. The

RE: [Histonet] Negative Reagent Control

2012-07-23 Thread Smith, Allen
For the last couple of years, I've thought this was true, but I didn't have the guts to say so. Thank you, Richard for bringing the truth out and getting it accepted. Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, FL -Original Message-

RE: [Histonet] Recommendations for HRP anti Rabbit and mouse and AEC substrates

2012-06-30 Thread Smith, Allen
I have used Vector's ImmPress and ABC secondary antibody systems. I like ImmPress better: it has fewer steps, it gives me less background, and the reagents last longer. Vector's Nova Red has given me better results than any other stain that I have tried. -Allen A. Smith Barry University School

[Histonet] topoisomerase IIalpha

2012-06-11 Thread Smith, Allen
I would like to hear suggestions of a good primary antibody to human topoisomerase IIalpha. ___ Histonet mailing list Histonet@lists.utsouthwestern.edu http://lists.utsouthwestern.edu/mailman/listinfo/histonet

RE: [Histonet] GLASSWARE CALIBRATION

2012-03-28 Thread Smith, Allen
Glass glassware, including glass pipets, has always been accurate enough for my needs in making up histological stains. This is not (repeat NOT) true of pipettors with disposable tips: Some of my pipettors deliver exactly what they say they do, some deliver 50% more, and some deliver 3 times as

RE: [Histonet] Shiny side of a paraffin section

2012-02-29 Thread Smith, Allen
My mentor, Nick Roman, told me that sections adhere to the slide better if they go on shiny side down. Brenda Disbrey's HISTOLOGICAL LABORATORY METHODS says that laying the sections on the water bath or water droplet shiny side down makes it easier to remove creases. Benno Romeiss' MIKROSKOPIS

[Histonet] topoisomerase IHC

2012-01-06 Thread Smith, Allen
I am having difficulty localizing topoisomerase IIalpha with IHC. Mouse primary/biotinylated horse secondary works for me only some of the time. Rabbit primary/biotinylated goat secondary doesn't work at all for me. Does anyone have any suggestions for improving the performance of either syst

RE: [Histonet] Slides

2011-08-30 Thread Smith, Allen
Try coating the slides yourself with Vector Labs "Vectabond." Neither I nor any of my graduate students have ever lost a section from a slide coated with "Vectabond." -Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, Florida ___

RE: [Histonet] Formalin Fixation.

2011-06-22 Thread Smith, Allen
The reference is K.F. Gerston et al: Viability of mycobacteria in formalin-fixed tissues. International Journal of Tuberculosis and Lung Diseases. 2:521-523 (1998). -Allen A. Smith, Ph.D. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.u

RE: [Histonet] Formalin Fixation.

2011-06-22 Thread Smith, Allen
Formalin fixation kills most but not all bacteria. A significant percentage (~10%) of the mycobacteria present in the tissue remain viable. Tuberculosis bacteria have been cultured from ffpe blocks. Prions (Creutzfelt-Jacob disease) are believed to survive formalin fixation. Allen A. Smith, P

[Histonet] RE: block disposal

2011-06-06 Thread Smith, Allen
The best solution would be to give them to the Cooperative Human Tissue Network. Allen A. Smith Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, Florida -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsout

[Histonet] RE: Counter top immunos

2011-06-02 Thread Smith, Allen
I like the Vector ABC horseradish peroxidase kits, especially with the Nova Red chromogen. Mouse primary antibodies usually give me better results than rabbit or goat primaries. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwes

[Histonet] RE: Neutralizing Formalin

2011-04-22 Thread Smith, Allen
We bought materials for neutralizing formalin and started to use them. Two years later, the local EPA authorities told us to stop because we "lacked the competence to neutralize hazardous materials." Our neutralizing solution became a "hazardous material." We now pay a waste hauler to take ou

[Histonet] RE: microtome safety

2011-03-08 Thread Smith, Allen
My mentor used forceps. Thus I have always used forceps. I think the paraffin ribbon would melt onto fingers on a warm day. Allen A. Smith Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, Florida -Original Message- From: histonet-boun...@lists.utsouthweste

[Histonet] re: storing acetic acid

2011-01-25 Thread Smith, Allen
We have separate storage cupboards for inorganic acids (many of which are oxidizing agents) and organic acids (many of which are flammable). If we didn't have an organic acids cupboard, we would store it with organic solvents. The reaction of acetic acid with nitric acid might be violent, the

RE: [Histonet] Wear gloves when handling / cutting paraffin blocks.

2010-10-23 Thread Smith, Allen
Because the number of things that are required is finite, requirements can be documented. Because the number of things that are not required is infinite, it is usually impossible to find a printed statement that something is unnecessary. (I cannot document that gloves are unnecessary for handlin

RE: [Histonet] shrinkage

2010-08-24 Thread Smith, Allen
When I wrote my thesis on sweat glands, my experience was that fixation in Helly's fluid ("Zenker-formol") and paraffin embedding caused serious shrinkage: about 10-15% in each dimension. Allen A. Smith Professor of Anatomy Barry University School of Podiatric Medicine -Original Message

RE: [Histonet] Disposal of MMA & BPO Waste

2010-06-21 Thread Smith, Allen
This is what comes of letting people with little or no training in chemistry call themselves chemical waste mangers. Yes, methyl methacrylate is highly reactive when mixed with 1% benzoyl peroxide: it forms a hard, brittle polymer. Pour your left over methyl methacrylate and benzoyl peroxide in

[Histonet] RE: proper disposal of chemicals

2010-05-07 Thread Smith, Allen
Look up "Waste Hauling" in the Yellow Pages. Ask every company listed for a quote. Make sure the ammoniacal silver nitrate is wet; when it dries, it can rearrange to silver azide, a powerful and touchy primary explosive. -Original Message- From: histonet-boun...@lists.utsouthwestern.e

[Histonet] RE: Mucicarmine Stains

2010-01-25 Thread Smith, Allen
I use Sheehan and Hrapchak's formula and stain 1/2 hour at 45 degrees C. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Evans, Andria B Sent: Monday, January 25, 2010 2:42 PM To: histonet@lists.utsouthwest

RE: [Histonet] sharpen permanent knife blades

2009-12-22 Thread Smith, Allen
C.L. Sturkey (www.sturkey.com) in Lebanon, Pennsylvania, sharpens permanent microtome knives. They also have two grades of disposable blades. Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine -Original Message- From: histonet-boun...@lists.utsouthw

RE: [Histonet] (no subject)

2009-12-04 Thread Smith, Allen
There is no problem. I work on both human and animal tissues in the same lab with the same equipment. The only difference is in the accompanying paperwork. Allen A. Smith Professor of Anatomy Barry University School of Podiatric Medicine -Original Message- From: histonet-boun...@lists.ut

RE: [histonet] Cleaning and re-using slides

2009-11-30 Thread Smith, Allen
Cleaning slides strikes me as a very poor use of student time. If they are paid even 3/4 minimum wage, it is uneconomical. If they are unpaid, it is unfair to set them a task they can learn nothing from. -Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine

RE: [Histonet] Re: discarding old dry chemicals with no expiration date

2009-10-01 Thread Smith, Allen
The stuff found in the Judean caves is "kal ilan," indigo derived from Indigofera tinctoria. It is chemically identical to "tekhelet," indigo derived from Murex trunculus by photochemical debromination of Tyrian purple. Although some second and third century Jews, knowingly or unknowingly, use

RE: [Histonet] discarding old dry chemicals with no expiration date

2009-09-30 Thread Smith, Allen
The problem is letting people with little or no knowledge of chemistry make chemical decisions. Some chemicals are unstable on the shelf, some are not. Methyl green decomposes in a year or two, tetracycline decomposes in 5 years, indigo lasts for millennia. Indigo used by Bar Kochba's soldier

RE: [Histonet] formalin storage

2009-09-11 Thread Smith, Allen
Formaldehyde is flammable; formalin is not. Above 122 degrees Fahrenheit enough formaldehyde evaporates from formalin to create a modest fire hazard in the fumes just above the liquid. Try this: pour 3 ml of formalin (37% formaldehyde) into a watch glass under a fume hood (fan off). Touch a m

RE: Re:[Histonet] formalin storage

2009-09-11 Thread Smith, Allen
Theoretically, the fumes of HCl can react with the formaldehyde fumes to produce bis-chloromethyl ether, which is twice as toxic as osmium tetroxide. The yield from this reaction at 1 Atm is so small that I don't think I would worry about it unless I had open containers in a closed space. Allen

RE: [Histonet] formalin storage

2009-09-11 Thread Smith, Allen
Does he require his wife to wear chain mail gloves while paring potatoes? -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Jackie M O'Connor Sent: Friday, September 11, 2009 9:31 AM To: Jean Warren Cc: hist

RE: [Histonet] Cleaning oil off objectives

2009-08-24 Thread Smith, Allen
If the contamination is fresh, a bit of spit on a piece of lens paper will usually remove it. Human salivary mucin is an excellent emulsifier. The best thing for removing old contamination is cedarwood oil. Again, use a drop on a piece of lens paper. Allen A. Smith Professor of Anatomy Barry

RE: [Histonet] Start Up Lab

2009-07-23 Thread Smith, Allen
I can't imagine why any one would use dioxin, which used to be used as an insulator and heat convector in electron microscope transformers, as a clearing agent. I think you mean dioxane. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.

RE: [Histonet] histology for kids

2009-07-22 Thread Smith, Allen
If you ripen it with air or sodium iodate, alum hematoxylin is quite safe. FD&C green #3 is food grade fast green FCF, an excellent stain for collagen. FD&C yellow #5 is tartrazine, a plasma stain. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-bo

RE: [Histonet] hood for manual special stains

2009-06-24 Thread Smith, Allen
I think a fume hood and a safety shower should be standard laboratory fixtures. I have a fume hood. I use it for manual coverslipping. I require my students to do the same. OSHA says that exposure to xylene fumes can cause liver damage. There is also a persistent rumor that repeated ex

RE: [Histonet] Gross photography/macrophotography

2009-05-21 Thread Smith, Allen
I have been very happy with the Olympus C-7000. It will focus at 3 1/4 inches (8 cm) in its macro mode. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Reuel Cornelia Sent: Wednesday, May 20, 2009 4:53 PM

RE: [Histonet] Question about DAB waste

2009-05-13 Thread Smith, Allen
We were told that, in Miami-Dade County, we would have to apply for a license to do this. We gave up on the cumbersome licensing procedure. Allen A. Smith, Ph.D. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Beha

[Histonet] RE: Question about DAB waste

2009-05-13 Thread Smith, Allen
We keep our DAB waste in a plastic container and give it to our waste disposal company every 6 months. No one has objected to this procedure. Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine Miami Shores, FL -Original Message- From: histonet-boun...

[Histonet] RE: I'm outta here

2009-04-07 Thread Smith, Allen
I can spot spam and o.t. posts and delete them in a half second each. The questions on Histonet make me aware of the extent of use of special stains, and the potential for new stains. Jjob postings are forwarded to the career service office here. The safety warnings are often very useful. HI

RE: [Histonet] Current books for Histotechnology

2009-03-25 Thread Smith, Allen
For an atlas, Ross and Pawlina's HISTOLOGY, Wheater's FUNCTIONAL HISTOLOGY, or Gartner and Hiatt's COLOR ATLAS OF HISTOLOGY are all good. They are also more accurate than DiFiore. -Allen a. Smith,Ph.D. -Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet

RE: [Histonet] Current books for Histotechnology

2009-03-25 Thread Smith, Allen
Definitely get the 4th edition of Kiernan. Also get the latest edition of Polak and van Noorden's INTRODUCTION TO IMMUNOCYTOCHEMISTRY. If you don't already have them, used second or third editions of Lillie's HISTOPATHOLOGIC TECHNIC AND PRACTICAL HISTOCHEMISTRY and Pierce's HISTOCHEMISTRY, THE

RE: [Histonet] Current books for Histotechnology

2009-03-25 Thread Smith, Allen
-Original Message- From: histonet-boun...@lists.utsouthwestern.edu [mailto:histonet-boun...@lists.utsouthwestern.edu] On Behalf Of Jennifer MacDonald Sent: Friday, March 20, 2009 4:45 PM To: histonet@lists.utsouthwestern.edu Subject: [Histonet] Current books for Histotechnology Our lib

RE: [Histonet] Disposal of Formaldehyde

2009-03-13 Thread Smith, Allen
Formaldehyde can mess up the bacteria that treat the sewage. We used to neutralize our formaldehyde with Richard Allen's "Vytac" and send the results down the drain. Two years ago we were told that we would have to get a license and do quantitative analysis on each batch in order to continue u

RE: [Histonet] Re: Nuclear fast red

2009-02-26 Thread Smith, Allen
I have used brazalum, made by substituting brazilin for hematoxylin in the recipe for Mayer's hemalum. It stains nuclei a slightly deeper red than nuclear fast red. Colorfastness is excellent. I have 40-year old slides stained with brazalum that still look as they did on the day I made them. A

[Histonet] RE: Nuclear fast red

2009-02-25 Thread Smith, Allen
I bought my nuclear fast red from Aldrich 15 years ago. Kernechtrot (nuclear fast red with an aluminum mordant) solutions made from it still work well and still last about a year. Allen A. Smith, Ph.D. Barry University School of Podiatric Medicine Miami Shores, Florida -Original Message

RE: [Histonet] fume exposure

2009-02-14 Thread Smith, Allen
The only staining solutions whose fumes bother me are ammonium sulfide and sulfurous acid. I put the staining jars of these in the fume hood and carry the staining jar with the slides to the fume hood. I bring the water rinse jar to the fume hood to take the slides out. While sulfurous acid i

RE: [Histonet] query regarding IHC slide

2009-02-03 Thread Smith, Allen
A lot depends on the stain chosen. I have used Vector's Nova Red for the last 3 years. I have seen no fading of my older Nova Red slides. Prof. Allen A. Smith Barry University School of Podiatric Medicine Miami Shores, Florida -Original Message- From: histonet-boun...@lists.utsouthweste

RE: [Histonet] silver stain for mouse intestinal nerves

2009-01-12 Thread Smith, Allen
Almost any method will work in intestine. I have had good results with Holmes' stain and more impressive results with Kiernan's method. I have also had good results with Winkelmann's method, but it is terribly time consuming. -Original Message- From: histonet-boun...@lists.utsouthweste

[Histonet] RE: H&E help

2009-01-09 Thread Smith, Allen
Some tap waters blue hematoxylin very well, some not so well. I avoid the issue of differences in tap waters by blueing in 1.2% aqueous lithium carbonate (almost a saturated solution). - Allen A. Smith, Ph.D. Professor of Anatomy Barry University School of Podiatric Medicine Mi

RE: [Histonet] What is the stickest slides

2008-12-16 Thread Smith, Allen
I buy Vector Labs' VECTABOND and coat the slides myself. I dry the sections onto the slides for 2 days. I have yet to lose a section. -Allen A. Smith, Ph.D. Professor of Anatomy School of Podiatric Medicine Barry University Miami Shores, Florida -Original Message- From: histonet-boun...

RE: [Histonet] Alias identity

2008-12-09 Thread Smith, Allen
The wise and experienced Rosalind Franklin also had the structure wrong. From: Rene J Buesa [mailto:[EMAIL PROTECTED] Sent: Tuesday, December 09, 2008 8:19 AM To: 'John Kiernan'; Smith, Allen Cc: 'Histonet@lists.utsouthwestern.edu' Subject: RE: [Histonet] Alias identity

RE: [Histonet] Alias identity

2008-12-08 Thread Smith, Allen
While I prefer to go by my own name, I recognize that some people rightly fear to do so. An anonymous source may still have something worthwhile to say. Experience does not always teach well. The wise and experienced Linus Pauling and Erwin Chargaff were wrong about the structure of DNA; the b

[Histonet] RE: Glassware Cleaner

2008-11-11 Thread Smith, Allen
I had excellent results with a little concentrated hydrochloric acid. The first rinse could be dumped into a beaker full of sodium carbonate solution and washed down the drain. My wastewater people are currently happier with my scrubbing the glassware with Erado-Sol from Cambridge Diagnostics. I

RE: [Histonet] Be careful, be very careful when you Vote!

2008-11-04 Thread Smith, Allen
Sam Histology seems to be unfamiliar with Exodus 23:1. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Sam Histology Sent: Tuesday, November 04, 2008 9:48 AM To: histonet@lists.utsouthwestern.edu Subject: [Histonet] Be careful, be very careful when you Vot

RE: [Histonet] B5 fixative

2008-10-20 Thread Smith, Allen
B5, Schaudinn's, SUSA, Helly's, and Zenker's fixatives contain mercury (II) ions, which are VERY poisonous. Sewage bacteria convert mercury (II) to methyl mercury, which is very, very poisonous. (For a shocking example of mercury toxicity, see the photo essay MINAMATA by W. Eugene Smith.) When

RE: [Histonet] Toluene vs. Xylene

2008-10-10 Thread Smith, Allen
Although both are flammable and give off toxic fumes, toluene is slightly more dangerous because it has a higher vapor pressure. The flash point of toluene is 5 degrees C; the flash point of xylene is around 25 degrees C (Merck index; Lewis & Sax say 38 degrees C). -Original Message- F

[Histonet] RE: Normal solution

2008-09-14 Thread Smith, Allen
[EMAIL PROTECTED] Sent: Sunday, September 14, 2008 5:29 AM To: Smith, Allen; [EMAIL PROTECTED] Subject: Normal solution Help! Can someone tell me exactly how to make a 1 N solution of Ammonium chloride? ___ Histonet mailing list Histonet