Re: [Jmol-users] Error message- Cannot invert matrix

well, it doesn't solve MY problem. Could you please send me the offending file? email:[EMAIL PROTECTED] I have a feeling it is subtlely different from the one at RCSB, and I'd like to fix the reader to accept it if possible. Bob On 3/15/07, Steven Vik <[EMAIL PROTECTED]> wrote: The error mess

Re: [Jmol-users] isosurfaces and the new translucency

this is fixed. On 3/15/07, Sérgio Ceroni da Silva <[EMAIL PROTECTED]> wrote: Bob Hanson wrote: > Sergio, I'm not seeing this. What are you seeing that is "improper"? > Frieda Reichsman wrote: > Hi Sergio, > > Are you actually issuing the command > > color translucent {object} > as in, > color

[Jmol-users] Error message- Cannot invert matrix

The error message appears in the Jmol Script Console and in the Jmol window. I have now found that if the PDB file (6LDH) is stripped of the Header (from REMARKS to SCALE3) the monomeric protein appears. The header appears to contain the information to generate the tetramer. The very similar fil

Re: [Jmol-users] Jmol 11.1.22 features

sorry, I forgot the link: http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-11/show.htm?data/timnav.spt Bob Hanson wrote: > Q: What do you get when you combine? > > - isosurface WITHIN x.xx [some point or atom] # just now added > > - translucent surfaces > > - navigation > > > A: A gu

Re: [Jmol-users] isosurfaces and the new translucency

Timothy Driscoll escreveu: I believe I've isolated the problem. Apparently, "select DNA" is not working in 11.1.21. I've set up two pages: with 11.1.21 with 11.0.1 They are identical except for the

Re: [Jmol-users] isosurfaces and the new translucency

On Mar 15, 2007, at 10:32 AM, Sérgio Ceroni da Silva wrote: > Bob Hanson wrote: >> Sergio, I'm not seeing this. What are you seeing that is "improper"? >> > > > I believe I've isolated the problem. Apparently, "select DNA" is not > working in 11.1.21. I've set up two pages: > >

Re: [Jmol-users] isosurfaces and the new translucency

Bob Hanson wrote: > Sergio, I'm not seeing this. What are you seeing that is "improper"? > Frieda Reichsman wrote: > Hi Sergio, > > Are you actually issuing the command > > color translucent {object} > as in, > color translucent atoms? > > It should be: color {object} translucent > > If you ar

Re: [Jmol-users] Jmol-users Digest, Vol 10, Issue 22

The closest you can come is to color a sequence: select within ("AHHPPA") selects for that sequence within the protein or nucleic acid. On 3/15/07, vinu manikandan <[EMAIL PROTECTED]> wrote: hi.. every one.. i had small doubt.. i will input the sequence through a program in to the jmo

[Jmol-users] Error message- Cannot invert matrix

I'm not seeing a problem. Where exactly are you seeing this error? FileManager.openFile(http://www.rcsb.org/pdb/files/6ldh.pdb,0,0,0,0) ZAP memory inuse, total, free, max: 7421856 14331904 6910048 66650112 FileManager opening http://www.rcsb.org/pdb/files/6ldh.pdb The Resolver thinks Pdb openFile

Re: [Jmol-users] isosurfaces and the new translucency

Hi Sergio, Are you actually issuing the command color translucent {object} as in, color translucent atoms? It should be: color {object} translucent If you are using scripts, this would render all subsequent commands ineffective. Frieda On Mar 15, 2007, at 8:51 AM, Bob Hanson wrote: Se

Re: [Jmol-users] Jmol-users Digest, Vol 10, Issue 22

Hi Vinu, As far as I know there is no way to autmatically color a domain in Jmol. To accomplish this you would need to select the residues in the domain, and then use a color command. If the domain were from residues 20-114 of chain B, it would look like this select 20-114:B color [r,g,b]

Re: [Jmol-users] isosurfaces and the new translucency

Sergio, I'm not seeing this. What are you seeing that is "improper"? Bob Hanson Date: Wed, 14 Mar 2007 16:48:39 -0300 From: S?rgio Ceroni da Silva <[EMAIL PROTECTED] > Subject: Re: [Jmol-users] isosurfaces and the new translucency To: jmol-users@lists.sourceforge.net

[Jmol-users] isosurfaces and the new translucency

This is fixed in Jmol 11.1.22. Message: 1 Date: Wed, 14 Mar 2007 15:02:21 -0400 From: Frieda Reichsman <[EMAIL PROTECTED] > Subject: [Jmol-users] isosurfaces and the new translucency To: jmol-users@lists.sourceforge.net Message

Re: [Jmol-users] Jmol-users Digest, Vol 10, Issue 22

hi.. every one.. i had small doubt.. i will input the sequence through a program in to the jmol i want the domain sequence to be highlighted only ... iam not able to figure that. would any one able to give an hint for tht loves vinu On 3/15/07, [EMAIL PROTECTED] < [EMAIL PROTECTED]>