[Jmol-users] Jmol_problem with display of orbitals_molden format

2012-04-06 Thread Vijay Gopal Chilkuri
Hi, I have problems with the display of orbitals of large molecules in molden format. I am using version 12.2.19. It seems that the molden for similar but smaller molecules are displayed perfectly but when the file contains a large number of electrons or calculations with a large basis set they

Re: [Jmol-users] Jmol_problem with display of orbitals_molden format

2012-04-06 Thread Robert Hanson
Bad news -- it's a Molden problem: 11 0 s3 1.00 0.3425250900D+01 0.1543289707D+00 0.6239137300D+00 0.5353281424D+00 0.1688554000D+00 0.4446345420D+00 ** 0 s3 1.00 0.3425250900D+01 0.1543289707D+00 0.6239137300D+00 0.5353281424D+00 0.1688554000D+00 0.4446345420D+00

Re: [Jmol-users] Jmol_problem with display of orbitals_molden format

2012-04-06 Thread Robert Hanson
Vijay, a hack for this is at http://chemapps.stolaf.edu/jmol/docs/examples-12/Jmol-12_2.zip It is not guaranteed, because it works under the premise that the previous good atom number is the same atom type. If you can't get Molden fixed, let me know, and I will put more energy into making this

[Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Robert Hanson
Kevin, I'm experimenting some with hybridizing Jmol and ChemDoodle. But I'm having problems just getting ChemDoodle to work at all. Can you tell us what the specific browser requirements (working versions) are for http://web.chemdoodle.com/demos/molgrabber-3d (I've seen

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Philip Bays
I have looked at the page on my Mac (Snow Leopard). It does not work with Safari, Camino, or omniweb, but does work with Firefox and Chrome. I get the same black image with the web GL message. I think the browser-compatiobility page is out of date:-( On Apr 6, 2012, at 3:20 PM, Robert

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Timothy Driscoll
On Apr 6, 2012, at 4:01 pm, Philip Bays wrote: I have looked at the page on my Mac (Snow Leopard). It does not work with Safari, Camino, or omniweb, but does work with Firefox and Chrome. I get the same black image with the web GL message. I think the browser-compatiobility page is out

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Kevin Theisen
Firefox supports WebGL on all platforms. If it does not work, your graphics card may be currently blacklisted. Chrome is the same, except Chrome has software rendering, allowing for WebGL pretty much everywhere. Safari supports WebGL on Mac OS X, you need to enable it in the Developer menu.

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Robert Hanson
On Fri, Apr 6, 2012 at 3:13 PM, Kevin Theisen ke...@ichemlabs.com wrote: Firefox supports WebGL on all platforms. If it does not work, your graphics card may be currently blacklisted. blacklisted? Hmm. Yes. That turns out to be the problem. What a royal pain. about:support says it's being

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Kevin Theisen
Yes, I completely agree, the fragmentation is very annoying, but given that WebGL only came out of beta status last year, I am not surprised. What I recommend is a grouping of technologies, so Jmol and ChemDoodle should be used together to reach all devices. Older graphics cards are less likely

Re: [Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Timothy Driscoll
On Apr 6, 2012, at 4:32 pm, Robert Hanson wrote: Chrome is the same, except Chrome has software rendering, allowing for WebGL pretty much everywhere. OK, I get it. So Chrome's WebGL is a fake, essentially, and that explains why it is absolutely destroying my battery life right now and

[Jmol-users] Jmol/ChemDoodle

2012-04-06 Thread Craig T Martin
Bob and Kevin The page DOES work for me using Safari on a Mac (Lion 10.7.3 with yesterday's Java update). It also DOES work with FireFox and Chrome (latest of both). UPDATE --- Just read the next digest (came while I was writing). Yes, I do have the Dev Tools showing and do have WebGL