Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

may > be just creating the surface. Don't expect the sort of response you see in > Coot. > > > > > > Cheers, > > Chris > > > > *From:* chris.w...@stfc.ac.uk [mailto:chris.w...@stfc.ac.uk] > *Sent:* 04 September 2014 19:29 > *To:* jmol-users@list

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

2014 16:01 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load On Thu, Sep 11, 2014 at 7:32 AM, mailto:chris.w...@stfc.ac.uk>> wrote: Hi Bob, Thanks for fixing the byte reading issue – I think that problem overshadowe

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

o describe doing that. But realize that even with the file in memory, the slow part in HTML5 may be just creating the surface. Don't expect the sort of response you see in Coot. > Cheers, > > Chris > > > > *From:* chris.w...@stfc.ac.uk [mailto:chris.w...@stfc.ac.uk]

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

ers@lists.sourceforge.net Subject: [Jmol-users] Setting cutoff with some maps causes map to fail to load Following the examples on the jsmol.htm page, I tried to change the cutoff off some maps I had; results at www.ccpem.ac.uk/jsmol_test/cutofftest.htm<http://www.ccpem.ac.uk/jsmol_test/cuto

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load Thanks – this now works (although in the download below the print statements still weren’t removed – I had to do it manually myself). Did you also make any changes to the PHP file? I’m trying to

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

ery=http:%2f%2fccpem.ac.uk%2fjsmol_test%2fdata%2f1cbs_2fofc.map&encoding=base64) Chris From: Robert Hanson [mailto:hans...@stolaf.edu] Sent: 10 September 2014 13:58 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load I had

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

and I now get an error >>> with the original 1cbs.cif example, and the map for my 2 example fails to >>> load – “loading map file…” displays indefinitely: >>> http://www.ccpem.ac.uk/jsmol_test/cutofftest.htm - is there something >>> else I’ve missed? >>> &

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

gt;> >> >> >> >> >> *From:* Robert Hanson [mailto:hans...@stolaf.edu] >> *Sent:* 08 September 2014 20:28 >> *To:* jmol-users@lists.sourceforge.net >> *Subject:* Re: [Jmol-users] Setting cutoff with some maps causes map to >> fail to load >> >> >&

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

tember 2014 20:28 > *To:* jmol-users@lists.sourceforge.net > *Subject:* Re: [Jmol-users] Setting cutoff with some maps causes map to > fail to load > > > > rebooting on this issue after fixing a possibly related problem -- > http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

From: Robert Hanson [mailto:hans...@stolaf.edu] Sent: 08 September 2014 20:28 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load rebooting on this issue after fixing a possibly related problem -- http://chemapps.stolaf.edu/jmol/zip

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

rebooting on this issue after fixing a possibly related problem -- http://chemapps.stolaf.edu/jmol/zip/jmol-14.3.7_2014.09.08b.zip Jmol.___JmolVersion="14.3.7_2014.09.08" bug fix: binary document reader can skip bytes if an http connection fails to deliver the full set of requested bytes

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

t;> same problems with these? >> http://www.ccpem.ac.uk/jsmol_test/data/emd_1494.mrc and >> http://www.ccpem.ac.uk/jsmol_test/data/emd_1998.mrc >> >> Chris >> >> >> >> >> From: Robert Hanson [hans...@stolaf.edu] >> >> Sent: 08 Septem

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

jsmol_test/data/emd_1494.mrc and http://www.ccpem.ac.uk/jsmol_test/data/emd_1998.mrc Chris From: Robert Hanson [hans...@stolaf.edu] Sent: 08 September 2014 13:13 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

OK, here's a twist: When I download the file and then read it from disk, it reads perfectly. When I load it as " http://www.ccpem.ac.uk/jsmol_test/data/1akeA_10A.mrc"; Jmol reads trash. Actually, the problem is intermittent. One time I read the following (blocks of 8 bytes, shown starting at byte

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

e > data values in the map range from 0 to 0.48 – is this likely to cause a > problem? > > > > Chris > > > > *From:* Robert Hanson [mailto:hans...@stolaf.edu] > *Sent:* 05 September 2014 15:49 > *To:* jmol-users@lists.sourceforge.net > *Subject:* Re: [Jmol-use

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

-users] Setting cutoff with some maps causes map to fail to load On Fri, Sep 5, 2014 at 8:46 AM, mailto:chris.w...@stfc.ac.uk>> wrote: Hi Bob, I should have probably said that this is an EM map, not a crystallography one! doesn't matter. It's still messed up. Jmol reads EM maps

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

On Fri, Sep 5, 2014 at 8:46 AM, wrote: > Hi Bob, > > > > I should have probably said that this is an EM map, not a crystallography > one! > doesn't matter. It's still messed up. Jmol reads EM maps just fine as far as I know. You sure it's OK? > - Is JMol able to set absolute cutoffs (a

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

1akeA_10A.mrc, so I’m not quite sure what you mean by saying that Jmol is failing to read the file Cheers, Chris From: Robert Hanson [mailto:hans...@stolaf.edu] Sent: 05 September 2014 00:49 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Setting cutoff with some maps causes map to fail to

Re: [Jmol-users] Setting cutoff with some maps causes map to fail to load

On Thu, Sep 4, 2014 at 1:28 PM, wrote: > Following the examples on the jsmol.htm page, I tried to change the > cutoff off some maps I had; results at > www.ccpem.ac.uk/jsmol_test/cutofftest.htm > > > > - The left hand object is the example, which works as expected > > - The mid

[Jmol-users] Setting cutoff with some maps causes map to fail to load

Following the examples on the jsmol.htm page, I tried to change the cutoff off some maps I had; results at www.ccpem.ac.uk/jsmol_test/cutofftest.htm - The left hand object is the example, which works as expected - The middle o