Re: [OpenBabel-Devel] ANNOUNCE: Open Babel 3.0.0 Released

2019-10-24 Thread Maciek Wójcikowski
Hurray! Good job guys! czw., 24 paź 2019, 21:39 użytkownik Noel O'Boyle napisał: > And a big thanks to Geoff for pulling it all together. Hip hip > ___ > OpenBabel-Devel mailing list > OpenBabel-Devel@lists.sourceforge.net >

Re: [OpenBabel-Devel] Release Schedule

2019-09-06 Thread Maciek Wójcikowski
Hi all, Unfortunately I'm on holiday for the next two weeks, and away from any laptop, so I can't help. After September 20th I'm all in for the new release, if you need help then. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl pt., 6 wrz 2019 o 20:35 Geoffrey

Re: [OpenBabel-Devel] Version number on master

2017-10-07 Thread Maciek Wójcikowski
Hi, Seconded, although I'm not the target recipient. Just my 2c - it could be better to have dev version which is lesser than stable 2.4.2 (2.4.2dev > 2.4.2). Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2017-10-06 22:24 GMT+02:00 Noel O'Boyle <b

Re: [OpenBabel-Devel] Appveyor tests

2017-06-12 Thread Maciek Wójcikowski
is not recognized and built? Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2017-06-09 15:24 GMT+02:00 Maciek Wójcikowski <mac...@wojcikowski.pl>: > Apparently my last name killed conda build... https://ci.appveyor. > com/project/mwojcikowski/conda-openbabel/

Re: [OpenBabel-Devel] Appveyor tests

2017-06-09 Thread Maciek Wójcikowski
Apparently my last name killed conda build... https://ci.appveyor.com/project/mwojcikowski/conda-openbabel/build/1.0.23/job/hvv95j1fagio4ike Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2017-06-09 15:19 GMT+02:00 Maciek Wójcikowski <mac...@wojcikowski.pl>:

Re: [OpenBabel-Devel] Appveyor tests

2017-06-09 Thread Maciek Wójcikowski
I'm on it as we speak. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2017-06-09 15:09 GMT+02:00 Noel O'Boyle <baoille...@gmail.com>: > Thanks for the super quick response. I do appreciate it. > > There is a std::isnan via _isnan build problem whi

Re: [OpenBabel-Devel] 2.4.1

2016-10-11 Thread Maciek Wójcikowski
Hi, I think, that if you tagged it then the source = git tag and there is no way to change it. The only option is another tag I'm afraid. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2016-10-11 10:42 GMT+02:00 Michael Banck <mba...@debian.org>: > Hi &

Re: [OpenBabel-Devel] Windows + Data directory.

2016-07-07 Thread Maciek Wójcikowski
Yes, I forgot the windows part... Then the derivative would be to regex in python the output of "subprocess.check_output(['obabel', '-:c1c1', '-onul'], stderr=subprocess.STDOUT)". This should work cross platform. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojc

Re: [OpenBabel-Devel] Windows + Data directory.

2016-07-07 Thread Maciek Wójcikowski
Hi Geoff, We can check "obabel -:c1c1 -omol2 >/dev/null" == "1 molecule converted", or to be more specific the following should be empty: obabel -:c1c1 -omol2 2>&1 >/dev/null | grep "Cannot open *.txt defaulting to compiled data." Pozdrawia

Re: [OpenBabel-Devel] Windows + Data directory.

2016-07-05 Thread Maciek Wójcikowski
I've already tried that ( https://github.com/mwojcikowski/openbabel/commit/704250e925d765387257d5ee790d24f53803b7c2) although it didn't help :( If you have better solution that would be awesome, since I've ran out of options... Pozdrawiam, | Best regards, Maciek Wójcikowski mac

Re: [OpenBabel-Devel] Conda Windows

2016-07-05 Thread Maciek Wójcikowski
it's just changing the version in URL, since current git master compiles. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2016-07-05 20:42 GMT+02:00 Geoffrey Hutchison <geoff.hutchi...@gmail.com>: > > That is fine with me. The beauty of having openb

[OpenBabel-Devel] Windows + Data directory.

2016-07-04 Thread Maciek Wójcikowski
Babel Warning in OpenBabel::OBGlobalDataBase::Init > Cannot open types.txt defaulting to compiled data. > == > *** Open Babel Warning in OpenBabel::OBGlobalDataBase::Init > Cannot open phmodel.txt defaulting to compiled data. Pozdra

Re: [OpenBabel-Devel] Conda Windows

2016-07-04 Thread Maciek Wójcikowski
Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2016-07-03 23:07 GMT+02:00 Björn Grüning <bjoern.gruen...@gmail.com>: > Hi Maciek, > > Am 03.07.2016 um 21:42 schrieb Maciek Wójcikowski: > > Hi, > > > > The Conda build for wind

Re: [OpenBabel-Devel] Conda Windows

2016-07-03 Thread Maciek Wójcikowski
BTW, the link to repo and appveyor: https://github.com/mwojcikowski/openbabel-packages https://ci.appveyor.com/project/mwojcikowski/openbabel-packages Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2016-07-03 21:42 GMT+02:00 Maciek Wójcikowski <mac...@wojcikowski

Re: [OpenBabel-Devel] Release notes - anything missing?

2016-06-12 Thread Maciek Wójcikowski
Hi, Thanks again for compiling such list. One minor note - it may be good idea to sort the contributors by their last names instead of first. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2016-06-11 14:50 GMT+02:00 Noel O'Boyle <baoille...@gmail.com>:

Re: [OpenBabel-Devel] 2.4 Release - Scheduling & Future Plans

2015-12-14 Thread Maciek Wójcikowski
in development. Does anybody use them? I've seen them mentioned on the list once. They also lack some kind of automated testing, and tutorial for "BaPHPel". Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2015-12-14 22:07 GMT+01:00 Geoffrey Hutchison <ge

Re: [OpenBabel-Devel] OBPair support in Mol2 format

2015-12-08 Thread Maciek Wójcikowski
s lack support for multi-line properties... Must fix that one... ---- Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2015-12-08 2:41 GMT+01:00 Stefano Forli <fo...@scripps.edu>: > I had miss that in the source code, but if I get this right, writing extra >

Re: [OpenBabel-Devel] OBPair support in Mol2 format

2015-12-07 Thread Maciek Wójcikowski
I noticed that "local" OBPairData are explicitly ignored, which may be the reason they are not written for you: https://github.com/openbabel/openbabel/pull/112/files#diff-d6e9941b72192e2ba1a2d244948450aeR535 Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl

Re: [OpenBabel-Devel] Proposal for a modern C++ codebase

2015-04-27 Thread Maciek Wójcikowski
, and moving towards Boost.python? I think that SWIG extensions are desirable. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2015-04-27 12:20 GMT+02:00 Ryushiro Sugehara n.sakis...@gmail.com: Hi all, I've created an experimental fork to show a new codebase of openbabel

[OpenBabel-Devel] Release strategy

2013-10-02 Thread Maciek Wójcikowski
the API/ABI versions and introduce quarterly code freezes with all the bugfixes and major enhancements, f.e. the next release could be named 2.4_2014Q1 and so on. What do you think about such release strategy? Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.plhttps

[OpenBabel-Devel] Simplex minimization

2013-06-19 Thread Maciek Wójcikowski
as far as I know) http://blog.bolner.hu/2012/08/22/simplex/. Maybe other are available, but I'm not a C coder. What do you think about that idea? Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.plhttps://mail.google.com/mail/u/0/?view=cmfs=1tf=1to=mac...@wojcikowski.pl

Re: [OpenBabel-Devel] Python compile failure on trunk with OBFreeGridPoint

2012-12-12 Thread Maciek Wójcikowski
()' collect2: ld returned 1 exit status cmake 2.9.10.2, Python 2.7, swig 2.0.8, eigen 2+3 rest is stock. Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2012/11/22 David van der Spoel sp...@xray.bmc.uu.se On 2012-11-22 10:33, Noel O'Boyle wrote: I've a problem

Re: [OpenBabel-Devel] Getting 2.3.2 out the door

2012-10-03 Thread Maciek Wójcikowski
Hello, Will release of 2.3.2 be connected with GIT migration? Pozdrawiam, | Best regards, Maciek Wójcikowski mac...@wojcikowski.pl 2012/10/1 Geoffrey Hutchison geo...@pitt.edu I've merged in basically everything in trunk to the 2.3 branch. There are some depiction fixes and the ASCII