At 03:43 PM 8/19/2009 -0500, Fei Shi wrote:
Only when I run the code below I have a little problem:
*cat ids_overlap_* | sort -u a file name*
I have 3 files named as *ids_overlap_*(21Us/coding/ram)*. The error message
is:
*The system cannot find the file specified.
cat.exe: write error : invalid
On Tue, Aug 25, 2009 at 1:08 PM, Chris Wagnerwagn...@plebeian.com wrote:
At 03:43 PM 8/19/2009 -0500, Fei Shi wrote:
Only when I run the code below I have a little problem:
*cat ids_overlap_* | sort -u a file name*
I have 3 files named as *ids_overlap_*(21Us/coding/ram)*. The error message
is:
Fei Shi wrote:
The error message is as follows:
*Copying subject file 'cp' is not recognized as an internal or external
command, operable program or batch file.
formatting subject file [NULL_Caption] ERROR: Could not open
blast_dir_temp/file_subject
Try to install MSYS:
Hi Fei,
I had the same problem some time ago.
I solved it with tools from the following resource.
http://www.math.utah.edu/~beebe/gnu-on-windows.html
Many DOS commands are different in UNIX. Like dir / ls or del rm.
The other issue you will have to consider when modifying the script is
how you
Hi, All:
Thank you for all your inputs. They really help me a lot~~[?]
I downloaded the package UnxUtils and put my perl program under its bin
folder. After I changed the windows system path variable, I can run the
perl in the DOS system.
Only when I run the code below I have a little
Hi, Dear perl experts:
I am a new hand of perl. I use perl because I am trying to use a
package called
miRDeephttp://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html.
I install the *activeperl 5.10 for windows*. Then I
Hi Fei Shi,
It looks like your auto_blast.pl is not set up to run on Windows.
Those are UNIX system commands that it's erroring on (rm, cp, cat).
On Tue, Aug 18, 2009 at 3:39 PM, Fei Shijustfly2...@gmail.com wrote:
Hi, Dear perl experts:
I am a new hand of perl. I use perl because I
At 04:39 PM 8/18/2009 -0500, Fei Shi wrote:
But there is an error coming out when I tried to run this command
their demo: perl auto_blast.pl 454_aligned.fa precursors. fa-b
signatures.
The error message is as follows:
*Copying subject file 'cp' is not recognized as an internal or
