Re: [PyMOL] PyMOL 2.5 released

.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Stephen P. Molnar, Ph.D. www.molecular-modeling.net 614.312.7528 (c) Skype: smolnar1 ___ PyMOL-users mailing list Archives: http://www.mail-a

[PyMOL] Problem With Dynamic_Gromacs Plugin

h the Debian Stretch default gromacs-2019.1. Further, with the gromacs 2020 installation gmx command executes correctly at the command line. I may be wrong, but, might this be a PyMOL error? Thanks in advance. -- Stephen P. Molnar, Ph.D. www.molecular-modeling.net 614.312.7528

[PyMOL] Problem with autodock_plugin.py

ython2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwNoteBook.py", line 153, in insert Tkinter.Frame, self._hull), pageOptions) File "/usr/lib/python2.7/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py", line 465, in createcomponent 'Component name "%s" must not contain &qu

[PyMOL] Optimize Geometry {rpblem

. Which one might it be? Is any other information needed in order to address this rather nagging problem? Thanks in advance. -- Stephen P. Molnar, Ph.D.Life is a fuzzy set www.FoundationForChemistry.com Stochastic and multivariate (614)312-7528 (c) Skype: smolnar1 sudo

Re: [PyMOL] Caver 3.0 pugin

x27;n not sure how It have been clustered but now I'n looking for the method for the steered MD along caver-predicted pathes James 2013/11/17 Stephen P. Molnar <mailto:s.mol...@sbcglobal.net>> I would be interested in just how the problem has been solved! I just inst

Re: [PyMOL] Caver 3.0 pugin

s/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Stephen P. Molnar, Ph.D. Life is a fuzzy set Foundation for Chemistry Stochastic and multivariate www.FoundationForChemistry.com (61

[PyMOL] Pymol v-1.6.0 in Debian Testing Jessie

I have Debian Testing/Jessie installed in a VMware Player v-6.0 on my 64 bit Laptop as a testbed before installing apps on my native Linux production computer. I have installed the Debian package from the Jessie repository, but it crashes when I try to open it. The run log is attached. If an

Re: [PyMOL] Problem Compiling v 1.6.0.0 in 64 bit Debian Testing

On Tue, 25 Jun 2013 09:47:19 -0400 Robert Campbell wrote: > Hi Stephen, > > On Tue, 2013-06-25 09:16 EDT, "Stephen P. Molnar" > wrote: > > > I have just installed the 64 bit Debian Testing distribution in an > > Oracle VM on my laptop as a test be

[PyMOL] Problem Compiling v 1.6.0.0 in 64 bit Debian Testing

g. > OpenGL Warning: No pincher, please call crStateSetCurrentPointers() > in your SPU Unfortunately, I don't have the faintest idea as to what is missing. Any assistance will be appreciated. Thanks in advance. -- Ste

[PyMOL] Problems with Pymol v 1.6.0.0

Two minor, but annoying, problems with the new version in Debian 7.0 64 bit/ #1 The pull down menus in the graphics windows refuse to remain open when clicked, unless I left click and hold. Is this normal behavior? #2. Caver 2.1.2 will not save the location of the Directory with the plug

Re: [PyMOL] PyMOL 1.6 pre-release announcement

On Mon, 25 Mar 2013 18:47:27 +0100 Michael Banck wrote: > Hi Stephen, > > On Mon, Mar 25, 2013 at 01:33:16PM -0400, Stephen P. Molnar wrote: > > On Sun, 24 Mar 2013 11:02:08 +0100 > > Thomas Holder wrote: > > > The pre-release version of PyMOL 1.6 has been p

Re: [PyMOL] PyMOL 1.6 pre-release announcement

On Sun, 24 Mar 2013 11:02:08 +0100 Thomas Holder wrote: > Dear PyMOL users, > > The pre-release version of PyMOL 1.6 has been pushed to the open > source repository on SourceForge. Besides several minor fixes and > improvements, this version should complete the transition to > shader-based rende

Re: [PyMOL] How to get pymol 1.4

Thank you for your reply. I was too much in a hurry to write. I shall curb my impatience and wait for your announcement. Stephen P. Molnar, Ph.D. Life is a fuzzy set Foundation for Chemistry Stochastic and

Re: [PyMOL] How to get pymol 1.4

Going to www.pymol.org, clicking on OpenSource and then sf.net/projects/pymol/develop followed by Download PyMOL Molecular Graphics System will download pumol-1.3r2-src.tar.bz2. I would like to know if, and when, 1.4 will be available for downloading. Stephen P. Molnar, Ph.D

Re: [PyMOL] Problem Compiling Pymol 1.2.x

ymolwiki.org > > > > On Fri, Nov 20, 2009 at 4:54 PM, Justin Lecher wrote: > >> Stephen P. Molnar wrote: >> >>> Here's teh end of the log file that I recorded. I really don't have >>> anyplace to which to upload the entire 125 kb l

Re: [PyMOL] Problem Compiling Pymol 1.2.x

On 11/20/2009 02:16 PM, Donnie Berkholz wrote: > On 13:38 Fri 20 Nov , Stephen P. Molnar wrote: > >> I had successfully compiled Plymol from the Subversion repository in >> OpenSuSE v103. Linux. >> >> I say successfully, because I have just upgraded my linux

Re: [PyMOL] Problem Compiling Pymol 1.2.x

On 11/20/2009 01:57 PM, Andreas Förster wrote: > Hey Stephen, > > make sure you have Tkinter and freeglut-devel installed. These are > the dependencies that make trouble in RHEL. > > > Andreas > > > > Stephen P. Molnar wrote: >> I had successfully compiled P

[PyMOL] Problem Compiling Pymol 1.2.x

Viewer but notthe Pcl/Tck GUI. Obviously there is something missing in the new compiler installation, but I don't have the faintest idea as to what it could be. I was wonderig if anyone else has encountered this problem and/or might have a possible solution? Thanks in advance. -- Step