index.php?title=Running_the_TPP_docker_image
>
> Thanks for reporting the issue!
> --Luis
>
> On Fri, Jan 12, 2024 at 9:34 AM Will Comstock wrote:
>
>> Hi all, the link to the Docker Installation Tutorial appears to be
>> broken. Is there another place for me to find
Hi all, the link to the Docker Installation Tutorial appears to be broken.
Is there another place for me to find this tutorial?
Actually, the first three links on this page all lead to 404 errors for me:
http://www.tppms.org/tutorials/
Thank you!
-Will
[image: Screenshot 2024-01-12 at 12.30.17
han 128 GB. A GPU won’t help for
> Comet and the Prophets, so I would save money and go without the GPU.
>
>
>
> Regards,
>
> Eric
>
>
>
>
>
>
>
> *From:* spctools...@googlegroups.com *On
> Behalf Of *Will Comstock
> *Sent:* Wednesday
Hi all,
Kind of a naive tech question, but my lab is going to purchase a Linux
server to run the TPP and we're trying to decide on a hardware
configuration that would let us run Comet, PeptideProphet, PTM Prophet,
XPRESS, Libra, and a few other modules at robust speeds.
We currently run the TP
if "SRM as spectra" is required, but "SIM as spectra"
was key as all my MS1 scans were classified as SIM-MS scans)
3. I then searched the resulting mzML file as normal.
Thanks again, Jimmy!
-Will
On Friday, April 7, 2023 at 1:04:44 PM UTC-4 Will Comstock wrote:
>
XPRESS is failing because it's
> expecting to parse MS1 scans which aren't present in this file.
>
> Jimmy
>
> On Fri, Apr 7, 2023 at 8:57 AM Will Comstock wrote:
>
>> Hi all,
>>
>> I'm trying to use tSIM-ddMS2 to identify specific peptides in my sam
Hi all,
I'm trying to use tSIM-ddMS2 to identify specific peptides in my sample,
but I also want SILAC quantification of those peptides using XPRESS. I've
made sure the MS1 isolation window is wide enough to see both Light and
Heavy peptide peaks for everything in my inclusion list (30 daltons,
Hi all,
Very quick question: Is the TPP 6.1.0 fully compatible with Windows 11?
Thanks!
-Will
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pp
> and then use that to start Apache and then you’re good to go. Is this for
> Windows computers?
>
>
>
> Eric
>
>
>
>
>
> *From:* spctools...@googlegroups.com *On
> Behalf Of *Will Comstock
> *Sent:* Thursday, September 8, 2022 7:44 AM
> *To:* s
e TPP be installed on and run from a USB drive instead of the computer
itself?
Thanks,
-Will Comstock
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I have also been encountering this issue and would love to hear a solution.
The search still reads as "Running" but simply stops searching any more
mzML files. Depending on the size of my files, the search times out at
different points, but will almost never search more than 8 files at a time.
ernatively you can run
> InteractParser with -I flag to get the same values in the pepXML results.
>
> Cheers,
> -David
>
> On Thu, Sep 16, 2021 at 8:11 AM Will Comstock wrote:
>
>> Hello,
>>
>> After Comet searching mzXML files, appending the "Pr
sh this? I am
using TPP 6.0 for these analyses.
Respectfully,
-Will Comstock
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Thanks,
> -David
>
> On Fri, Sep 3, 2021 at 9:34 AM Will Comstock wrote:
>
>> Hi David,
>>
>> Here is a Google Drive folder containing all the files used in the
>> search. A .txt file with the error message I encountered is included, as
>> well as a scr
gt;
> Thank you!
>
> -David
>
>
>
> On Fri, Sep 3, 2021 at 8:02 AM Will Comstock wrote:
>
>> Hello,
>>
>> Our lab just updated from 5.2 to 6.0 and is testing some datasets that
>> were formerly searched with 5.2.
>>
>> We are now con
still able to be opened, there is just no
Libra result appended to the table.
Here is the Libra error encountered:
[image: TPP6_LibraError.PNG]
The return code is 29696. What could be causing this, and how might we try
fixing it?
Thank you,
-Will Comstock
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You received this message because
/
>
> If you do end up trying it let me know if you find any issues.
>
> Thanks!
> -David
>
> On Tue, Mar 16, 2021 at 5:14 PM Will Comstock wrote:
>
>> Hi David,
>>
>> I'll attempt to re-run PTMProphet analysis on a few problematic datasets
&g
ot happen if you use
> MAXTHREADS=1. I have corrected several bugs related to multithreading in
> the codebase. Which version of PTMProphet are you using?
>
> Thanks,
> -David
>
> On Tue, Mar 16, 2021 at 3:59 PM Will Comstock wrote:
>
>> Hey everyone,
>>
>> I'
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