: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt
brian.pr...@insilicos.com
wrote:
We basically tried that already: Eliza says the suggested
export PWD=/opt
[mailto:spctools-disc...@googlegroups.com] On Behalf Of
Mike
Coleman
Sent: Thursday, August 20, 2009 1:26 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Eliza,
I'mstill suspicious about the $PWD thing. If you're
running
'make'
normally, you might try
.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of
Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt
: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of
Mike
Coleman
Sent: Thursday, August 20, 2009 1:26 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Eliza,
I'mstill suspicious about
[mailto:spctools-disc...@googlegroups.com] On Behalf Of
Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt
brian.pr...@insilicos.com
wrote
: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt
brian.pr...@insilicos.com
wrote:
We basically tried that already: Eliza says the
suggested
-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Mike
Coleman
Sent: Thursday, August 20, 2009 1:26 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Eliza,
I'mstill suspicious about
@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com
wrote:
We
shell setup.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian
.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of
Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com
wrote:
We basically tried that already: Eliza says the suggested
export PWD=/opt/trans_proteomic_pipeline/src ; make all
install
-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com
wrote:
We basically
.
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com
wrote:
We basically tried
: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Mike Coleman
Sent: Thursday, August 20, 2009 1:26 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Eliza,
I'm still suspicious about the $PWD
-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 27, 2009 12:13 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com
wrote
-discuss
Subject: [spctools-discuss] Re: Failure with make
Bash
On Aug 20, 11:55 pm, Brian Pratt brian.pr...@insilicos.com wrote:
We basically tried that already: Eliza says the suggested
export PWD=/opt/trans_proteomic_pipeline/src ; make all install
did not work. She
Eliza,
I'm still suspicious about the $PWD thing. If you're running 'make'
normally, you might try something like
$ PWD=$(pwd) make ...
instead of just
$ make ...
to see whether that improves your situation. Alternatively, for the
'root' steps, you could do something like
$
Subject: [spctools-discuss] Re: Failure with make
Eliza,
I'm still suspicious about the $PWD thing. If you're running 'make'
normally, you might try something like
$ PWD=$(pwd) make ...
instead of just
$ make ...
to see whether that improves your situation. Alternatively, for the
'root
install
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Sunday, August 16, 2009 11:17 PM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
Firstly I want to clarify a section
I got the latest version of TPP (4.3.0) and this time when trying to
make I am getting the following error:
Makefile.incl:431: /Makefile.pwiz.incl: No such file or directory
make: *** No rule to make target `/Makefile.pwiz.incl'. Stop.
On Aug 5, 10:25 pm, Natalie Tasman
...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 13, 2009 7:46 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
I got the latest version of TPP (4.3.0) and this time when trying to
make I am getting the following error:
Makefile.incl:431: /Makefile.pwiz.incl: No such file
-discuss
Subject: [spctools-discuss] Re: Failure with make
I got the latest version of TPP (4.3.0) and this time when trying to
make I am getting the following error:
Makefile.incl:431: /Makefile.pwiz.incl: No such file or directory
make: *** No rule to make target `/Makefile.pwiz.incl'. Stop
(and the Makefile.pwiz.incl file).
-Original Message-
From: spctools-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 13, 2009 7:46 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
I got the latest version of TPP
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 13, 2009 7:46 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
I got the latest version of TPP (4.3.0) and this time when trying to
make I am getting the following error:
Makefile.incl:431
@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Natalie Tasman
Sent: Thursday, August 13, 2009 1:24 PM
To: spctools-discuss@googlegroups.com
Subject: [spctools-discuss] Re: Failure with make
Hi Mike,
That's a strange report about Ubuntu. I'm routinely building on 8.04
and 9.04
-discuss@googlegroups.com
[mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza
Sent: Thursday, August 13, 2009 7:46 AM
To: spctools-discuss
Subject: [spctools-discuss] Re: Failure with make
I got the latest version of TPP (4.3.0) and this time when trying to
make I am getting
Hi Natalie,
I have tried your suggestion and 'make distclean; make fails at:
make -C ../extern/xtandem/src SRC_ROOT=/ ARCH=linux BUILD_DIR=/../
build/linux clean
make[1]: Entering directory `/usr/local/src/tpp-4.2.1/extern/xtandem/
src'
make[1]: *** No rule to make target `clean'. Stop.
Hi Eliza,
I haven't run into this before, but you may want to try a make
distclean; make sequence. I would also look at the compiler output
earlier in the stream and see if there were any uncaught errors
building the AminoAcid that might provide a clue.
Please let us know how it goes,
29 matches
Mail list logo
