Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2014-02-06 Thread Joseph Slagel
Anton, Can you take a look in your Apache httpd logs and see if there are any access or error messages occurring when you try to open TPP? -Joe On Wed, Feb 5, 2014 at 4:12 AM, Anton Gurkov wrote: > Hello! > > The same issue for me as well. I have changed "SetEnv WEBSERVER_ROOT > /usr/local/"

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2014-02-05 Thread Anton Gurkov
Hello! The same issue for me as well. I have changed "SetEnv WEBSERVER_ROOT /usr/local/" to "SetEnv WEBSERVER_ROOT /usr/local/tpp/" in /etc/apache2/sites-enabled/tpp-4.6.3, but I have the same error. Thanks for any response, Anton. вторник, 9 июля 2013 г., 7:19:05 UTC+9 пользователь Khader Sha

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-07-08 Thread Khader Shameer
Hi I have tried this but still getting a 404. When I load http://localhost/tpp/cgi-bin/tpp_gui.pl Could you explain the steps you have done befor and after chaging the SetEnv ? Thanks, Shameer On Tuesday, June 25, 2013 9:20:57 AM UTC-7, tan42@gmail.com wrote: > > Setting > SetEnv WEB

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-06-25 Thread Joseph Slagel
Glad you were able to figure it out. Just to followup on this thread and let everyone know, since the 4.4.1 release of TPP I've been maintaining prebuilt Amazon AMIs for TPP . (The latest 4.6.3 image is even built on Ubuntu 12.04 LTS). Details about these images are available at: http://tools.

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-06-25 Thread tan42 . jameyer
Setting SetEnv WEBSERVER_ROOT /usr/local/ to SetEnv WEBSERVER_ROOT /usr/local/tpp/ did the job :) -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-di

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-06-25 Thread tan42 . jameyer
Hey everyone, it seems to me that I'm having a similar problem... /etc/apache2/sites-enabled/tpp-4.6.2 is available as a symlink to /etc/apache2/sites-available/tpp-4.6.2 when I'm trying to go to http://localhost/tpp/cgi-bin/tpp_gui.pl there is the Error 404 not found, the apache error-log says

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-22 Thread Jimmy Eng
Liam, I have to ask this basic question ... can you confirm you have /etc/apache2/sites-enabled/tpp-4.6.2? Either as a direct copy of /etc/apache2/sites-available/tpp-4.6.2 or preferably as a symlink to /etc/apache2/sites-available/tpp-4.6.2? What does your apache error log indicate when you try

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-22 Thread Liam Bell
Found the solution at http://forum.linode.com/viewtopic.php?t=7873, the second post by Piki sorted out the error whilst trying to enable to a2ensite command, however the site still does not load. As far as I can tell my /etc/apache2/apache2.conf file is setup correctly, my /etc/apache2/sites-avail

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-22 Thread Liam Bell
Hi guys, I went back to the original installation guide and re-configured the apache part. However when I $ a2ensite tpp-4.6.2 I got the following output: root@liam-Y500:~# a2ensite tpp-4.6.2 ERROR: Site tpp-4.6.2 not properly enabled: /etc/apache2/sites-enabled/tpp-4.6.2 is a real file, not touch

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Jimmy Eng
Apache2 is a little foreign to me. I've only setup one apache2/TPP server which I don't have easy access to in order to take a look. See if this link helps you: http://serverfault.com/questions/135993/how-do-i-change-the-document-root-of-a-linux-apache-server On Sun, Apr 21, 2013 at 1:27 PM, L

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Hi Jimmy, I set SetEnv WEBSERVER_ROOT /var/www in my /etc/apache2/sites-available/tpp-4.6.2 But when I checked for what my DocumentRoot variable was set to in my apache2.conf file but there was no variable for this set in that file. Where should this be set? Thanks for your help so far, I appreci

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Jimmy Eng
Liam, Here's a snippet of what you posted 3 days ago. The entry "SetEvn WEBSERVER_ROOT". Set this to the same thing you have DocumentRoot set as in apache2.conf. > On Thu, Apr 18, 2013 at 2:08 PM, Liam Bell wrote: And triple checked the paths that were set in the /etc/apache2/sites-available

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Where can I find what my WEBSERVER_ROOT variable has been set to? Which configuration file is it in? On 21 April 2013 21:25, Jimmy Eng wrote: > Liam. > > Your ServerRoot should probably still be "/etc/apache2". ServerRoot is > the root of the directory tree where your apache config files are k

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Jimmy Eng
Liam. Your ServerRoot should probably still be "/etc/apache2". ServerRoot is the root of the directory tree where your apache config files are kept. What I was referring to was your DocumentRoot which is what your WEBSERVER_ROOT environment variable should be set to. This DocumentRoot is the ro

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Trying to access the gui page I still get the same error message (404 Not found): Not Found The requested URL /tpp/cgi-bin/tpp_gui.pl was not found on this server. -- Apache/2.2.22 (Ubuntu) Server at localhost Port 80 On 21 April 2013 21:04, Liam Bell wrote: > Hi Ji

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Hi Jimmy, I looked up the WEBSERVER_ROOT environment variable in my /etc/apache2/apche2.conf file. I think the relevant section is this: # Global configuration # # # ServerRoot: The top of the directory tree under which the server's # configuration, error, and log files are kept. # # NOTE! If y

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Jimmy Eng
Liam, At this point, perl is not the issue for you; our problem is definitely with your apache config. The WEBSERVER_ROOT environment variable should point to your webserver's document root i.e. the directory that contains the index.html file that says "It Works!". Is it possibly /var/www/html?

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Having the old files remain might not make a difference, but intuitively removing them might help. You're welcome, and good luck! On Sunday, April 21, 2013 7:10:30 PM UTC+1, Liam Bell wrote: > > I didn't remove the old files...not my brightest moment. > > I will do that and then do a fresh clean

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
I didn't remove the old files...not my brightest moment. I will do that and then do a fresh clean install and make the mods you have made and let you know, although I may only be able to email the results tomorrow sometime. Thank you for all your help though it's helping me NOT beat my head again

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
That's a shame. Did you completely remove all the old TPP files in between installs? The only difference I can see between our installs at the moment, is that I removed the space in my variable assignment, between '=' and '/usr'... What I will do is list all the things I did that were worth writ

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Nope - no dice... Changed the PERL_LIB_CORE= /usr/lib/perl/15.4.2/CORE in the makefile.conf.incl file before re-running the compiling/building. Ran through the rest fo the steps from http://tools.proteomecenter.org/wiki/index.php?title=TPP_4.5.2:_Installing_on_Ubuntu_10.04.3 as I have done succes

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Hi Liam, I set mine to /usr/lib/perl/5.14/CORE, but using 5.14.2 shouldn't make a difference, since the 5.14 folder is a symlink to 5.14.2. Yes, I would do that. Let's hope this is the fix. On Sunday, April 21, 2013 6:02:16 PM UTC+1, Liam Bell wrote: > > Hi Ross, > > Here you go: > PERL_LIB_CORE

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Hi Ross, Here you go: PERL_LIB_CORE= /usr/lib/perl/5.10/CORE/ The CORE folder does exist at /usr/lib/perl/5.14.2/CORE. Should I recompile and change that variable before I do? On 21 April 2013 18:05, Ross wrote: > Hm. In your Makefile.config.incl, what is your PERL_LIB_CORE variable ? > Does

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Hm. In your Makefile.config.incl, what is your PERL_LIB_CORE variable ? Does the version of Perl in that variable match the version installed on your computer? (command line: $ perl --version) To test if the variable is viable, I navigated down the path of the variable in the terminal to see if

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
It was set to root but I changed it to your settings and restarted apache but still not working... It's rather vexing! On 21 April 2013 17:24, Ross wrote: > Hi Liam, > > I'm sorry this hasn't helped. I've cross checked the TPP entries of our > two httpd.conf files (the one you posted above) an

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Hi Liam, I'm sorry this hasn't helped. I've cross checked the TPP entries of our two httpd.conf files (the one you posted above) and they are identical. Alternatively it could be your permissions. For the entire /usr/local/tpp folder I have ownership set to apache (www-data) and permissions as

Re: [spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Liam Bell
Hi Ross, Thanks for the tip but it hasn't helped, would you be able to post the contents of your httpd.conf file for me so I can make sure it is the same as what I currently have? Thanks, Liam On 21 April 2013 10:43, Ross wrote: > Bear in mind that in some httpd.conf files there is a dedicate

[spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Bear in mind that in some httpd.conf files there is a dedicated section for this: ### Section 3: Virtual Hosts On Sunday, 21 April 2013 09:42:29 UTC+1, Ross wrote: > > Hi all, > > I encountered this issue myself on Ubuntu 12.04: I found that making the > tpp.4.6.2 file in /etc/apache2/sites-avai

[spctools-discuss] Re: TPP 4.6.2 installation problem Ubuntu 12.04 LTS virtual box

2013-04-21 Thread Ross
Hi all, I encountered this issue myself on Ubuntu 12.04: I found that making the tpp.4.6.2 file in /etc/apache2/sites-available didn't work either. Instead, I found the following solved the issue: - Paste the contents of the tpp-x.y.z file into /etc/apache2/httpd.conf This definitely wor