one more piece of puzzle.
The httpd-tpp.conf has:
## Set the TPP's environment variables
SetEnv TPP_HOME /usr/local/tpp
SetEnv TPP_DATADIR /data
SetEnv SEQ2MS_SOURCE_URL _SEQ2MS_SOURCE_URL_
SetEnv SEQ2MS_DEFAULT_MODEL _SEQ2MS_DEFAULT_MODEL_
SetEnv TPP_BASEURL /tpp
SetEnv TPP_DATAURL /tpp/data
When I change the TPP_BASEURL and TPP_DATAURL to the same as in the
site.mk file
SetEnv TPP_BASEURL tpp
SetEnv TPP_DATAURL tpp/data
The login screen then goes to:
http://localhost:10401/tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl
Site not found.
So it is adding an additional tpp/cgi-bin/ to the path after login as guest.
Is this a webserver config issue or a tpp issue?
On Tuesday, April 16, 2024 at 1:14:03 PM UTC+10 Robert Willows wrote:
> Hi David,
>
> I've changed the site.mk and recompiled.
> Deleted the old install in the /usr/local/tpp directory and reinstalled
> withy make install.
> Restarted everything but still have the same issue.
>
> Still goes to http://tpp/cgi-bin/tpp_gui.pl after entering guest username
> and password.
> I've tried some of the other cgi-bin programs in place of tpp_gui.pl
> http://localhost:10401/tpp/cgi-bin/XXXXX and they all run and give
> somewhat of the expected output given no files, except for
> http://localhost:10401/tpp/cgi-bin/tpp_gui_config.pl
>
> Internal Server Error
>
> The server encountered an internal error or misconfiguration and was
> unable to complete your request.
>
> Please contact the server administrator at [no address given] to inform
> them of the time this error occurred, and the actions you performed just
> before this error.
>
> More information about this error may be available in the server error log.
>
> [Tue Apr 16 13:08:10.934308 2024] [cgid:error] [pid 841488:tid
> 140546230744960] (8)Exec format error: AH01241: exec of
> '/usr/local/tpp/cgi-bin/tpp_gui_config.pl' failed
>
> [Tue Apr 16 13:08:10.934745 2024] [cgid:error] [pid 841395:tid
> 140546200757824] [client ::1:38680] End of script output before headers:
> tpp_gui_config.pl
> On Tuesday, April 16, 2024 at 11:02:17 AM UTC+10 David Shteynberg wrote:
>
>> Hi Robert,
>>
>> I think I see the problem. TPP_BASEURL and TPP_DATAURL should be
>> relative, no start with '/', try changing your site.mk to :
>>
>> INSTALL_DIR = /usr/local/tpp
>> TPP_DATADIR = /data
>> TPP_BASEURL = tpp
>> TPP_DATAURL = tpp/data
>> TPP_PORT = 10401
>>
>> Then you will need to make all and make install from scratch. The
>> easiest way is to rename the previous build directory.
>>
>> Cheers!
>> -David
>>
>>
>>
>>
>>
>> On Mon, Apr 15, 2024 at 5:50 PM Robert Willows <rwill...@gmail.com>
>> wrote:
>>
>>> Hi David,
>>>
>>> The site.mk file is:
>>> INSTALL_DIR = /usr/local/tpp
>>> TPP_DATADIR = /data
>>> TPP_BASEURL = /tpp
>>> TPP_DATAURL = /tpp/data
>>> TPP_PORT = 10401
>>>
>>> The output from http://localhost:10401/tpp/cgi-bin/check_env.pl is
>>> HTTP_ACCEPT =
>>> text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7
>>> HTTP_SEC_CH_UA_PLATFORM = "Linux"
>>> REQUEST_URI = /tpp/cgi-bin/check_env.pl
>>> HTTP_SEC_FETCH_MODE = navigate
>>> PATH =
>>> /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin
>>> SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl
>>> SERVER_SOFTWARE = Apache/2.4.52 (Ubuntu)
>>> WEBSERVER_ROOT = /usr/local/tpp
>>> SERVER_NAME = localhost
>>> CONTEXT_PREFIX = //tpp/cgi-bin
>>> REMOTE_ADDR = ::1
>>> SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.pl
>>> TPP_DATADIR = /data
>>> HTTP_CONNECTION = keep-alive
>>> HTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8",
>>> "Chromium";v="123"
>>> HTTP_SEC_FETCH_USER = ?1
>>> REQUEST_METHOD = GET
>>> SCRIPT_NAME = /tpp/cgi-bin/check_env.pl
>>> SEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_
>>> SCRIPT_URL = /tpp/cgi-bin/check_env.pl
>>> HTTP_ACCEPT_ENCODING = gzip, deflate, br, zstd
>>> SERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port 10401
>>> HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36
>>> (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36
>>> REMOTE_PORT = 49404
>>> TPP_BASEURL = //tpp
>>> TPP_DATAURL = //tpp/data
>>> USERPROFILE = /usr/local/tpp
>>> GATEWAY_INTERFACE = CGI/1.1
>>> HTTP_HOST = localhost:10401
>>> CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-bin
>>> HTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8
>>> PERL5LIB = /usr/local/tpp/lib/perl
>>> DOCUMENT_ROOT = /var/www/html
>>> REQUEST_SCHEME = http
>>> SEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_
>>> QUERY_STRING =
>>> SERVER_ADMIN = [no address given]
>>> HTTP_SEC_FETCH_SITE = none
>>> WEBSERVER_TMP = /tmp
>>> SERVER_PROTOCOL = HTTP/1.1
>>> HTTP_UPGRADE_INSECURE_REQUESTS = 1
>>> HTTP_SEC_FETCH_DEST = document
>>> SERVER_PORT = 10401
>>> SERVER_ADDR = ::1
>>> SSRCALC = /usr/local/tpp/conf
>>> HTTP_SEC_CH_UA_MOBILE = ?0
>>> TPP_HOME = /usr/local/tpp
>>>
>>>
>>>
>>>
>>> On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg wrote:
>>>
>>> Hi Robert,
>>>
>>> Thanks for trying to install and use TPP on Ubuntu. It seems the
>>> webserver is somewhat misconfigured for tpp on your system. Can you share
>>> the site.mk file that you are using for this build as this file allows
>>> to control the PATHs and URLS used by TPP?
>>>
>>> Thanks!
>>> -David
>>>
>>>
>>> On Mon, Apr 15, 2024, 1:08 AM Robert Willows <rwill...@gmail.com> wrote:
>>>
>>>
>>> I just finished building and installing TPP 7.0 under Ubuntu. All
>>> appears well until I go to http://localhost:10401/tpp/cgi-bin/tpp_gui.pl
>>>
>>> The login appears:
>>> ISB/SPC Trans Proteomic Pipeline ::
>>> .....
>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
>>>
>>> But after entering guest as username and password the pages goes to:
>>> http://tpp/cgi-bin/tpp_gui.pl
>>> and
>>> This site can’t be reached
>>>
>>> Check if there is a typo in tpp.
>>> DNS_PROBE_FINISHED_NXDOMAIN
>>>
>>> Apache error logs are empty and access log is:
>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/
>>> tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64)
>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36"
>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-"
>>>
>>> Any help or incites as I feel I've exhausted possibilities.
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>>
>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
>>>
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