Can you seen if you can access the server at: 127.0.0.1:10401/tpp
or 127.0.0.1:10401/tpp/cgi-bin/tpp_gui.pl Thanks! On Mon, Apr 15, 2024, 11:50 PM Robert Willows <rwillow...@gmail.com> wrote: > one more piece of puzzle. > The httpd-tpp.conf has: > ## Set the TPP's environment variables > SetEnv TPP_HOME /usr/local/tpp > SetEnv TPP_DATADIR /data > SetEnv SEQ2MS_SOURCE_URL _SEQ2MS_SOURCE_URL_ > SetEnv SEQ2MS_DEFAULT_MODEL _SEQ2MS_DEFAULT_MODEL_ > SetEnv TPP_BASEURL /tpp > SetEnv TPP_DATAURL /tpp/data > > When I change the TPP_BASEURL and TPP_DATAURL to the same as in the > site.mk file > SetEnv TPP_BASEURL tpp > SetEnv TPP_DATAURL tpp/data > > The login screen then goes to: > http://localhost:10401/tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl > Site not found. > So it is adding an additional tpp/cgi-bin/ to the path after login as > guest. > > Is this a webserver config issue or a tpp issue? > > > > On Tuesday, April 16, 2024 at 1:14:03 PM UTC+10 Robert Willows wrote: > >> Hi David, >> >> I've changed the site.mk and recompiled. >> Deleted the old install in the /usr/local/tpp directory and reinstalled >> withy make install. >> Restarted everything but still have the same issue. >> >> Still goes to http://tpp/cgi-bin/tpp_gui.pl after entering guest >> username and password. >> I've tried some of the other cgi-bin programs in place of tpp_gui.pl >> http://localhost:10401/tpp/cgi-bin/XXXXX and they all run and give >> somewhat of the expected output given no files, except for >> http://localhost:10401/tpp/cgi-bin/tpp_gui_config.pl >> >> Internal Server Error >> >> The server encountered an internal error or misconfiguration and was >> unable to complete your request. >> >> Please contact the server administrator at [no address given] to inform >> them of the time this error occurred, and the actions you performed just >> before this error. >> >> More information about this error may be available in the server error >> log. >> >> [Tue Apr 16 13:08:10.934308 2024] [cgid:error] [pid 841488:tid >> 140546230744960] (8)Exec format error: AH01241: exec of >> '/usr/local/tpp/cgi-bin/tpp_gui_config.pl' failed >> >> [Tue Apr 16 13:08:10.934745 2024] [cgid:error] [pid 841395:tid >> 140546200757824] [client ::1:38680] End of script output before headers: >> tpp_gui_config.pl >> On Tuesday, April 16, 2024 at 11:02:17 AM UTC+10 David Shteynberg wrote: >> >>> Hi Robert, >>> >>> I think I see the problem. TPP_BASEURL and TPP_DATAURL should be >>> relative, no start with '/', try changing your site.mk to : >>> >>> INSTALL_DIR = /usr/local/tpp >>> TPP_DATADIR = /data >>> TPP_BASEURL = tpp >>> TPP_DATAURL = tpp/data >>> TPP_PORT = 10401 >>> >>> Then you will need to make all and make install from scratch. The >>> easiest way is to rename the previous build directory. >>> >>> Cheers! >>> -David >>> >>> >>> >>> >>> >>> On Mon, Apr 15, 2024 at 5:50 PM Robert Willows <rwill...@gmail.com> >>> wrote: >>> >>>> Hi David, >>>> >>>> The site.mk file is: >>>> INSTALL_DIR = /usr/local/tpp >>>> TPP_DATADIR = /data >>>> TPP_BASEURL = /tpp >>>> TPP_DATAURL = /tpp/data >>>> TPP_PORT = 10401 >>>> >>>> The output from http://localhost:10401/tpp/cgi-bin/check_env.pl is >>>> HTTP_ACCEPT = >>>> text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7 >>>> HTTP_SEC_CH_UA_PLATFORM = "Linux" >>>> REQUEST_URI = /tpp/cgi-bin/check_env.pl >>>> HTTP_SEC_FETCH_MODE = navigate >>>> PATH = >>>> /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin >>>> SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl >>>> SERVER_SOFTWARE = Apache/2.4.52 (Ubuntu) >>>> WEBSERVER_ROOT = /usr/local/tpp >>>> SERVER_NAME = localhost >>>> CONTEXT_PREFIX = //tpp/cgi-bin >>>> REMOTE_ADDR = ::1 >>>> SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.pl >>>> TPP_DATADIR = /data >>>> HTTP_CONNECTION = keep-alive >>>> HTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8", >>>> "Chromium";v="123" >>>> HTTP_SEC_FETCH_USER = ?1 >>>> REQUEST_METHOD = GET >>>> SCRIPT_NAME = /tpp/cgi-bin/check_env.pl >>>> SEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_ >>>> SCRIPT_URL = /tpp/cgi-bin/check_env.pl >>>> HTTP_ACCEPT_ENCODING = gzip, deflate, br, zstd >>>> SERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port 10401 >>>> HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 >>>> (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36 >>>> REMOTE_PORT = 49404 >>>> TPP_BASEURL = //tpp >>>> TPP_DATAURL = //tpp/data >>>> USERPROFILE = /usr/local/tpp >>>> GATEWAY_INTERFACE = CGI/1.1 >>>> HTTP_HOST = localhost:10401 >>>> CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-bin >>>> HTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8 >>>> PERL5LIB = /usr/local/tpp/lib/perl >>>> DOCUMENT_ROOT = /var/www/html >>>> REQUEST_SCHEME = http >>>> SEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_ >>>> QUERY_STRING = >>>> SERVER_ADMIN = [no address given] >>>> HTTP_SEC_FETCH_SITE = none >>>> WEBSERVER_TMP = /tmp >>>> SERVER_PROTOCOL = HTTP/1.1 >>>> HTTP_UPGRADE_INSECURE_REQUESTS = 1 >>>> HTTP_SEC_FETCH_DEST = document >>>> SERVER_PORT = 10401 >>>> SERVER_ADDR = ::1 >>>> SSRCALC = /usr/local/tpp/conf >>>> HTTP_SEC_CH_UA_MOBILE = ?0 >>>> TPP_HOME = /usr/local/tpp >>>> >>>> >>>> >>>> >>>> On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg wrote: >>>> >>>> Hi Robert, >>>> >>>> Thanks for trying to install and use TPP on Ubuntu. It seems the >>>> webserver is somewhat misconfigured for tpp on your system. Can you share >>>> the site.mk file that you are using for this build as this file allows >>>> to control the PATHs and URLS used by TPP? >>>> >>>> Thanks! >>>> -David >>>> >>>> >>>> On Mon, Apr 15, 2024, 1:08 AM Robert Willows <rwill...@gmail.com> >>>> wrote: >>>> >>>> >>>> I just finished building and installing TPP 7.0 under Ubuntu. All >>>> appears well until I go to >>>> http://localhost:10401/tpp/cgi-bin/tpp_gui.pl >>>> >>>> The login appears: >>>> ISB/SPC Trans Proteomic Pipeline :: >>>> ..... >>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>> >>>> But after entering guest as username and password the pages goes to: >>>> http://tpp/cgi-bin/tpp_gui.pl >>>> and >>>> This site can’t be reached >>>> >>>> Check if there is a typo in tpp. >>>> DNS_PROBE_FINISHED_NXDOMAIN >>>> >>>> Apache error logs are empty and access log is: >>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/ >>>> tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64) >>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36" >>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-" >>>> >>>> Any help or incites as I feel I've exhausted possibilities. >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com >>>> <https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> >>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com >>>> <https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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