This seems to be a configuration issue but I am not sure where, likely in the server. It appears you are running apache 2.4.x (same as I, on my phone ubuntu emulator ;) which is in configured by http-2.4-tpp.conf. This file should be first configured by site.mk at make install. You should not have to modify this file, perhaps only for testing. Is the css stylesheet loading for you on the login screen? Can you provide a screenshot? Are you serving any other sites from this server?
Thanks! On Mon, Apr 15, 2024, 11:50 PM Robert Willows <rwillow...@gmail.com> wrote: > one more piece of puzzle. > The httpd-tpp.conf has: > ## Set the TPP's environment variables > SetEnv TPP_HOME /usr/local/tpp > SetEnv TPP_DATADIR /data > SetEnv SEQ2MS_SOURCE_URL _SEQ2MS_SOURCE_URL_ > SetEnv SEQ2MS_DEFAULT_MODEL _SEQ2MS_DEFAULT_MODEL_ > SetEnv TPP_BASEURL /tpp > SetEnv TPP_DATAURL /tpp/data > > When I change the TPP_BASEURL and TPP_DATAURL to the same as in the > site.mk file > SetEnv TPP_BASEURL tpp > SetEnv TPP_DATAURL tpp/data > > The login screen then goes to: > http://localhost:10401/tpp/cgi-bin/tpp/cgi-bin/tpp_gui.pl > Site not found. > So it is adding an additional tpp/cgi-bin/ to the path after login as > guest. > > Is this a webserver config issue or a tpp issue? > > > > On Tuesday, April 16, 2024 at 1:14:03 PM UTC+10 Robert Willows wrote: > >> Hi David, >> >> I've changed the site.mk and recompiled. >> Deleted the old install in the /usr/local/tpp directory and reinstalled >> withy make install. >> Restarted everything but still have the same issue. >> >> Still goes to http://tpp/cgi-bin/tpp_gui.pl after entering guest >> username and password. >> I've tried some of the other cgi-bin programs in place of tpp_gui.pl >> http://localhost:10401/tpp/cgi-bin/XXXXX and they all run and give >> somewhat of the expected output given no files, except for >> http://localhost:10401/tpp/cgi-bin/tpp_gui_config.pl >> >> Internal Server Error >> >> The server encountered an internal error or misconfiguration and was >> unable to complete your request. >> >> Please contact the server administrator at [no address given] to inform >> them of the time this error occurred, and the actions you performed just >> before this error. >> >> More information about this error may be available in the server error >> log. >> >> [Tue Apr 16 13:08:10.934308 2024] [cgid:error] [pid 841488:tid >> 140546230744960] (8)Exec format error: AH01241: exec of >> '/usr/local/tpp/cgi-bin/tpp_gui_config.pl' failed >> >> [Tue Apr 16 13:08:10.934745 2024] [cgid:error] [pid 841395:tid >> 140546200757824] [client ::1:38680] End of script output before headers: >> tpp_gui_config.pl >> On Tuesday, April 16, 2024 at 11:02:17 AM UTC+10 David Shteynberg wrote: >> >>> Hi Robert, >>> >>> I think I see the problem. TPP_BASEURL and TPP_DATAURL should be >>> relative, no start with '/', try changing your site.mk to : >>> >>> INSTALL_DIR = /usr/local/tpp >>> TPP_DATADIR = /data >>> TPP_BASEURL = tpp >>> TPP_DATAURL = tpp/data >>> TPP_PORT = 10401 >>> >>> Then you will need to make all and make install from scratch. The >>> easiest way is to rename the previous build directory. >>> >>> Cheers! >>> -David >>> >>> >>> >>> >>> >>> On Mon, Apr 15, 2024 at 5:50 PM Robert Willows <rwill...@gmail.com> >>> wrote: >>> >>>> Hi David, >>>> >>>> The site.mk file is: >>>> INSTALL_DIR = /usr/local/tpp >>>> TPP_DATADIR = /data >>>> TPP_BASEURL = /tpp >>>> TPP_DATAURL = /tpp/data >>>> TPP_PORT = 10401 >>>> >>>> The output from http://localhost:10401/tpp/cgi-bin/check_env.pl is >>>> HTTP_ACCEPT = >>>> text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7 >>>> HTTP_SEC_CH_UA_PLATFORM = "Linux" >>>> REQUEST_URI = /tpp/cgi-bin/check_env.pl >>>> HTTP_SEC_FETCH_MODE = navigate >>>> PATH = >>>> /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin >>>> SCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.pl >>>> SERVER_SOFTWARE = Apache/2.4.52 (Ubuntu) >>>> WEBSERVER_ROOT = /usr/local/tpp >>>> SERVER_NAME = localhost >>>> CONTEXT_PREFIX = //tpp/cgi-bin >>>> REMOTE_ADDR = ::1 >>>> SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.pl >>>> TPP_DATADIR = /data >>>> HTTP_CONNECTION = keep-alive >>>> HTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8", >>>> "Chromium";v="123" >>>> HTTP_SEC_FETCH_USER = ?1 >>>> REQUEST_METHOD = GET >>>> SCRIPT_NAME = /tpp/cgi-bin/check_env.pl >>>> SEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_ >>>> SCRIPT_URL = /tpp/cgi-bin/check_env.pl >>>> HTTP_ACCEPT_ENCODING = gzip, deflate, br, zstd >>>> SERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port 10401 >>>> HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 >>>> (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36 >>>> REMOTE_PORT = 49404 >>>> TPP_BASEURL = //tpp >>>> TPP_DATAURL = //tpp/data >>>> USERPROFILE = /usr/local/tpp >>>> GATEWAY_INTERFACE = CGI/1.1 >>>> HTTP_HOST = localhost:10401 >>>> CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-bin >>>> HTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8 >>>> PERL5LIB = /usr/local/tpp/lib/perl >>>> DOCUMENT_ROOT = /var/www/html >>>> REQUEST_SCHEME = http >>>> SEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_ >>>> QUERY_STRING = >>>> SERVER_ADMIN = [no address given] >>>> HTTP_SEC_FETCH_SITE = none >>>> WEBSERVER_TMP = /tmp >>>> SERVER_PROTOCOL = HTTP/1.1 >>>> HTTP_UPGRADE_INSECURE_REQUESTS = 1 >>>> HTTP_SEC_FETCH_DEST = document >>>> SERVER_PORT = 10401 >>>> SERVER_ADDR = ::1 >>>> SSRCALC = /usr/local/tpp/conf >>>> HTTP_SEC_CH_UA_MOBILE = ?0 >>>> TPP_HOME = /usr/local/tpp >>>> >>>> >>>> >>>> >>>> On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg wrote: >>>> >>>> Hi Robert, >>>> >>>> Thanks for trying to install and use TPP on Ubuntu. It seems the >>>> webserver is somewhat misconfigured for tpp on your system. Can you share >>>> the site.mk file that you are using for this build as this file allows >>>> to control the PATHs and URLS used by TPP? >>>> >>>> Thanks! >>>> -David >>>> >>>> >>>> On Mon, Apr 15, 2024, 1:08 AM Robert Willows <rwill...@gmail.com> >>>> wrote: >>>> >>>> >>>> I just finished building and installing TPP 7.0 under Ubuntu. All >>>> appears well until I go to >>>> http://localhost:10401/tpp/cgi-bin/tpp_gui.pl >>>> >>>> The login appears: >>>> ISB/SPC Trans Proteomic Pipeline :: >>>> ..... >>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>> >>>> But after entering guest as username and password the pages goes to: >>>> http://tpp/cgi-bin/tpp_gui.pl >>>> and >>>> This site can’t be reached >>>> >>>> Check if there is a typo in tpp. >>>> DNS_PROBE_FINISHED_NXDOMAIN >>>> >>>> Apache error logs are empty and access log is: >>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/ >>>> tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64) >>>> AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36" >>>> 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-" >>>> >>>> Any help or incites as I feel I've exhausted possibilities. >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> >>>> TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64) >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com >>>> <https://groups.google.com/d/msgid/spctools-discuss/efaa2e37-fa8a-482a-aeda-4bb044a6b5ean%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discu...@googlegroups.com. >>>> >>> To view this discussion on the web visit >>>> https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com >>>> <https://groups.google.com/d/msgid/spctools-discuss/9f412926-4391-4995-9896-70b992563cc7n%40googlegroups.com?utm_medium=email&utm_source=footer> >>>> . >>>> >>> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/d6b5a41f-74cc-4eb6-875f-7016bb4b14a3n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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