Hi David,
The style sheet isn’t loading. Just a very basic login screen missing the usual TPP style. The same when running the other cgi’s from the browser/s. No not serving any other sites from this server.
Regards Robert On 17 Apr 2024, at 12:53 AM, 'David Shteynberg' via spctools-discuss <spctools-discuss@googlegroups.com> wrote:
This seems to be a configuration issue but I am not sure where, likely in the server. It appears you are running apache 2.4.x (same as I, on my phone ubuntu emulator ;) which is in configured by http-2.4-tpp.conf. This file should be first configured by site.mk at make install. You should not have to modify this file, perhaps only for testing. Is the css stylesheet loading for you on the login screen? Can you provide a screenshot? Are you serving any other sites from this server?
Thanks!
one more piece of puzzle. The httpd-tpp.conf has: ## Set the TPP's environment variables SetEnv TPP_HOME /usr/local/tpp SetEnv TPP_DATADIR /data SetEnv SEQ2MS_SOURCE_URL _SEQ2MS_SOURCE_URL_ SetEnv SEQ2MS_DEFAULT_MODEL _SEQ2MS_DEFAULT_MODEL_ SetEnv TPP_BASEURL /tpp SetEnv TPP_DATAURL /tpp/data
When I change the TPP_BASEURL and TPP_DATAURL to the same as in the site.mk file SetEnv TPP_BASEURL tpp SetEnv TPP_DATAURL tpp/data
The login screen then goes to: Site not found. So it is adding an additional tpp/cgi-bin/ to the path after login as guest.
Is this a webserver config issue or a tpp issue?
On Tuesday, April 16, 2024 at 1:14:03 PM UTC+10 Robert Willows wrote:
Hi David,
I've changed the site.mk and recompiled. Deleted the old install in the /usr/local/tpp directory and reinstalled withy make install. Internal Server ErrorThe server encountered an internal error or misconfiguration and was unable to complete your request. Please contact the server administrator at [no address given] to inform them of the time this error occurred, and the actions you performed just before this error. More information about this error may be available in the server error log. [Tue Apr 16 13:08:10.934308 2024] [cgid:error] [pid 841488:tid 140546230744960] (8)Exec format error: AH01241: exec of '/usr/local/tpp/cgi-bin/tpp_gui_config.pl' failed
[Tue Apr 16 13:08:10.934745 2024] [cgid:error] [pid 841395:tid 140546200757824] [client ::1:38680] End of script output before headers: tpp_gui_config.pl
On Tuesday, April 16, 2024 at 11:02:17 AM UTC+10 David Shteynberg wrote:
Hi Robert,
I think I see the problem. TPP_BASEURL and TPP_DATAURL should be relative, no start with '/', try changing your site.mk to :
INSTALL_DIR = /usr/local/tpp TPP_DATADIR = /data
TPP_BASEURL = tpp TPP_DATAURL = tpp/data TPP_PORT = 10401
Then you will need to make all and make install from scratch. The easiest way is to rename the previous build directory.
Cheers! -David
Hi David,
INSTALL_DIR = /usr/local/tpp TPP_DATADIR = /data TPP_BASEURL = /tpp TPP_DATAURL = /tpp/data TPP_PORT = 10401
HTTP_ACCEPT = text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,image/apng,*/*;q=0.8,application/signed-exchange;v=b3;q=0.7HTTP_SEC_CH_UA_PLATFORM = "Linux"REQUEST_URI = /tpp/cgi-bin/check_env.plHTTP_SEC_FETCH_MODE = navigatePATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/binSCRIPT_FILENAME = /usr/local/tpp/cgi-bin/check_env.plSERVER_SOFTWARE = Apache/2.4.52 (Ubuntu)WEBSERVER_ROOT = /usr/local/tppSERVER_NAME = localhostCONTEXT_PREFIX = //tpp/cgi-binREMOTE_ADDR = ::1SCRIPT_URI = http://localhost:10401/tpp/cgi-bin/check_env.plTPP_DATADIR = /dataHTTP_CONNECTION = keep-aliveHTTP_SEC_CH_UA = "Google Chrome";v="123", "Not:A-Brand";v="8", "Chromium";v="123"HTTP_SEC_FETCH_USER = ?1REQUEST_METHOD = GETSCRIPT_NAME = /tpp/cgi-bin/check_env.plSEQ2MS_SOURCE_URL = _SEQ2MS_SOURCE_URL_SCRIPT_URL = /tpp/cgi-bin/check_env.plHTTP_ACCEPT_ENCODING = gzip, deflate, br, zstdSERVER_SIGNATURE =Apache/2.4.52 (Ubuntu) Server at localhost Port 10401HTTP_USER_AGENT = Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/123.0.0.0 Safari/537.36REMOTE_PORT = 49404TPP_BASEURL = //tppTPP_DATAURL = //tpp/dataUSERPROFILE = /usr/local/tppGATEWAY_INTERFACE = CGI/1.1HTTP_HOST = localhost:10401CONTEXT_DOCUMENT_ROOT = /usr/local/tpp/cgi-binHTTP_ACCEPT_LANGUAGE = en-GB,en-US;q=0.9,en;q=0.8PERL5LIB = /usr/local/tpp/lib/perlDOCUMENT_ROOT = /var/www/htmlREQUEST_SCHEME = httpSEQ2MS_DEFAULT_MODEL = _SEQ2MS_DEFAULT_MODEL_QUERY_STRING =SERVER_ADMIN = [no address given]HTTP_SEC_FETCH_SITE = noneWEBSERVER_TMP = /tmpSERVER_PROTOCOL = HTTP/1.1HTTP_UPGRADE_INSECURE_REQUESTS = 1HTTP_SEC_FETCH_DEST = documentSERVER_PORT = 10401SERVER_ADDR = ::1SSRCALC = /usr/local/tpp/confHTTP_SEC_CH_UA_MOBILE = ?0TPP_HOME = /usr/local/tpp
On Tuesday, April 16, 2024 at 12:01:17 AM UTC+10 David Shteynberg wrote:
Hi Robert,
Thanks for trying to install and use TPP on Ubuntu. It seems the webserver is somewhat misconfigured for tpp on your system. Can you share the site.mk file that you are using for this build as this file allows to control the PATHs and URLS used by TPP?
Thanks! -David
The login appears: ISB/SPC Trans Proteomic Pipeline :: ..... TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
But after entering guest as username and password the pages goes to: and This site can’t be reachedCheck if there is a typo in tpp. DNS_PROBE_FINISHED_NXDOMAIN
Apache error logs are empty and access log is: 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:01 +1000] "GET /tpp/cgi-bin/ tpp_gui.pl HTTP/1.1" 200 1076 "-" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/ 123.0.0.0 Safari/537.36" 127.0.1.1:80 ::1 - - [15/Apr/2024:17:47:53 +1000] "-" 408 0 "-" "-"
Any help or incites as I feel I've exhausted possibilities.
TPP v7.0.0 Arafel, Build 202404151216-exported (Linux-x86_64)
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